Non-Coding RNA Search

Ss1.1-Tes1-TES01H030009.5

Sequence:


               
               CACGCGCCCGCGCTGGCCTCCGCTGTCTTCCCCAGAGCTGCTGCCCCTGCTCTCCTCGCC
GAGATGCCACCCCCCAGCCTGGAGATGGTGAGCGGCCAGGTTCTCCCGGCCTTCCTGCTC
TGCAGCACGCTGCTGGTCATCAAGATGTACGTAGTGGCCATCATCACGGGCCAAGTGAGG
CTTCGGAAGAAGGCTTTTGCCAACCCCGAGGATGCTCAGAGACACGGAGGCCTCCAGTAC
TGCCGGAGCGACCCAGACGTGGAACGCTGCCTTAGGGCCCATCGGAATGACATGGAGACC
ATTTACCCCTTCCTGTTCCTGGGCCTCGTCTACTCCTTCCTGGGGCCTGACCCCTTCGTC
GCCTGGATGCACTTCCTGATCTTCTTCCTGGGCCGCATGGTACACACCATAGCCTACCTG
GGGAAGCTGCGGGCACCCACCCGCTCCCTGGCCTACACCCTGGCCCAGCTCCCCTGCGCC
TCCATGGCCCTGCAGATCGTCTGGGAGGCAGCCCGCCACCTGTGACCAGCCACTGACGCC
TCCTCGGCCACCAGACCACTGGCCACAAGCCAGTGAGATCATGGGCCTGGATTCCTGGCA
ACCTGGGATCCTGGGCTCAGTGGGCCTGTGTGTGTGCCCATGTGCCGCCCGGATTCCTGG
GTGAAGGGGCTGATCGGTACTGTTAAGAGATTGGTACTTGTCACCATTGATCAAAAAAAT
CCTTCCATTTCAATAAGAGCATGAAAACCATCACTCCCTCCTCCGTCCTAAGACGGGGAA
GCATGAGTGGAGACTCAATTCAGGTTCTGAGCCTAGTGACCCTCCGAATCCAGGGCTGTA
ATAAACCAGGACCTTTCAGATCCAGAGGTTGTGGTCCAGCTGGTCTAGAGGGGGAGCCTG
AGCGTCTGTGTTTTTTAAAAGTGCCCCTGTGAGGAGTTCCCTCTGTGGCTCAGCGGGTTA
AGAACCTGACAGAATGTCCTTGAGGATTCAGGTGCCATTTTTGGCCCTGCCCAGTGGGTT
AAGGATCTGGCGTTGCCATGGCTGTGGCATAGGTCGCAGGTGTGGCTCATATTGGACCTT
TGGCCCAGGAACTTCCAAATGCTGCAGGTGTGACCATAACAAATTTGAAAATAAAATAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACGCGCCCGCGCTGGCCTCCGCTGTCTTCCCCAGAGCTGCTGCCCCTGCTCTCCTCGCC
GAGATGCCACCCCCCAGCCTGGAGATGGTGAGCGGCCAGGTTCTCCCGGCCTTCCTGCTC
TGCAGCACGCTGCTGGTCATCAAGATGTACGTAGTGGCCATCATCACGGGCCAAGTGAGG
CTTCGGAAGAAGGCTTTTGCCAACCCCGAGGATGCTCAGAGACACGGAGGCCTCCAGTAC
TGCCGGAGCGACCCAGACGTGGAACGCTGCCTTAGGGCCCATCGGAATGACATGGAGACC
ATTTACCCCTTCCTGTTCCTGGGCCTCGTCTACTCCTTCCTGGGGCCTGACCCCTTCGTC
GCCTGGATGCACTTCCTGATCTTCTTCCTGGGCCGCATGGTACACACCATAGCCTACCTG
GGGAAGCTGCGGGCACCCACCCGCTCCCTGGCCTACACCCTGGCCCAGCTCCCCTGCGCC
TCCATGGCCCTGCAGATCGTCTGGGAGGCAGCCCGCCACCTGTGACCAGCCACTGACGCC
TCCTCGGCCACCAGACCACTGGCCACAAGCCAGTGAGATCATGGGCCTGGATTCCTGGCA
ACCTGGGATCCTGGGCTCAGTGGGCCTGTGTGTGTGCCCATGTGCCGCCCGGATTCCTGG
GTGAAGGGGCTGATCGGTACTGTTAAGAGATTGGTACTTGTCACCATTGATCAAAAAAAT
CCTTCCATTTCAATAAGAGCATGAAAACCATCACTCCCTCCTCCGTCCTAAGACGGGGAA
GCATGAGTGGAGACTCAATTCAGGTTCTGAGCCTAGTGACCCTCCGAATCCAGGGCTGTA
ATAAACCAGGACCTTTCAGATCCAGAGGTTGTGGTCCAGCTGGTCTAGAGGGGGAGCCTG
AGCGTCTGTGTTTTTTAAAAGTGCCCCTGTGAGGAGTTCCCTCTGTGGCTCAGCGGGTTA
AGAACCTGACAGAATGTCCTTGAGGATTCAGGTGCCATTTTTGGCCCTGCCCAGTGGGTT
AAGGATCTGGCGTTGCCATGGCTGTGGCATAGGTCGCAGGTGTGGCTCATATTGGACCTT
TGGCCCAGGAACTTCCAAATGCTGCAGGTGTGACCATAACAAATTTGAAAATAAAATAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|58891305|gb|AAW83055.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|58891305|gb|AAW83055.1|

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               1-193, gnl|bosTau2|chr11 (80323112-80322925)
               

               
               1-193, gnl|Hg17|chr9 (129594894-129594719)
               

               
               1-193, gnl|Mm7|chr2 (30910594-30910400)
               


               
               271-573, gnl|bosTau2|chr11 (80312312-80312010)
               

               
               271-573, gnl|Hg17|chr9 (129581698-129581396)
               

               
               271-573, gnl|Mm7|chr2 (30900141-30899842)
               


               
               607-933, gnl|bosTau2|chr11 (80311926-80311597)
               

               
               607-933, gnl|Hg17|chr9 (129581311-129580974)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-193, gnl|bosTau2|chr11 (80323112-80322925)
               

               
               1-193, gnl|Hg17|chr9 (129594894-129594719)
               

               
               1-193, gnl|Mm7|chr2 (30910594-30910400)
               


               
               271-573, gnl|bosTau2|chr11 (80312312-80312010)
               

               
               271-573, gnl|Hg17|chr9 (129581698-129581396)
               

               
               271-573, gnl|Mm7|chr2 (30900141-30899842)
               


               
               607-933, gnl|bosTau2|chr11 (80311926-80311597)
               

               
               607-933, gnl|Hg17|chr9 (129581311-129580974)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               duo (0.345602)
               

               
               pla (0.267344)
               

               
               ute (0.265569)
               

               
               cov (0.264306)
               

               
               med (0.232504)
               

               
               ton (0.1755)
               

               
               nje (0.16592)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               clu (0.119646)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.345602)
               

               
               pla (0.267344)
               

               
               ute (0.265569)
               

               
               cov (0.264306)
               

               
               med (0.232504)
               

               
               ton (0.1755)
               

               
               nje (0.16592)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               clu (0.119646)

	1-193, gnl\|bosTau2\|chr11 (80323112-80322925)
	1-193, gnl\|Hg17\|chr9 (129594894-129594719)
	1-193, gnl\|Mm7\|chr2 (30910594-30910400)

	271-573, gnl\|bosTau2\|chr11 (80312312-80312010)
	271-573, gnl\|Hg17\|chr9 (129581698-129581396)
	271-573, gnl\|Mm7\|chr2 (30900141-30899842)

	607-933, gnl\|bosTau2\|chr11 (80311926-80311597)
	607-933, gnl\|Hg17\|chr9 (129581311-129580974)

	duo (0.345602)
	pla (0.267344)
	ute (0.265569)
	cov (0.264306)
	med (0.232504)
	ton (0.1755)
	nje (0.16592)
	nmm (0.132802)
	ese (0.126502)
	clu (0.119646)