Non-Coding RNA Search

Ss1.1-Tes1-TES01H030047.5

Sequence:


               
               CTCCCCGACCCGGAGGCTGAGGATCATGGGGCCTGGAGCCCTCTTCCTGCTGCTGTCGGG
GGCCCTGGCCCTGACCGGGACCCAGGCGGGTCCCCACTCCCTGAGGTATTTCGACACCGC
CGTGTCCCGGCCCGACCGCGGGGAGCCCCGCTTCATCGCCGTCGGCTACGTGGACGACAC
GCAGTTCGTGCGGTTCGACAGCGACGCCCCGAATCCGCGGATGGAGCCTCGGGTGCCGTG
GATACAGCAGGAGGGGCAGGACTATTGGGATGAGGAGACGCGGAAAGTCAAGGACAACGC
ACAGACTTACCGAGTGGACCTGAACACCCTGCGCGGCTACTACAACCAGAGCGAGGCCGG
GTCTCACACCATCCAGACCATGTACGGCTGCGACGTGGGACCAGACGGGCTCCTCCTCCG
CGGGTACAGACAGGACGCCTACGACGGCGCCGATTACATCGCCCTGAACGAGGACCTGCG
CTCCTGGACAGCGGCGGACATGGCGGCTCAGATCACCAAGCGCAAGTGGAAGGCGGCCCA
TGAGGCGGAGCGGATGAGGAGCTACCTGCAGGGCCGGTGTGTGGAGTGGCTCCAGAAATA
CCTGGAGATGGGGAAGGACACGCTGCAGCGCGCAGAGCCTCCAAAGACACATGTGACCCG
CCACCCCAGCTCTGACCTGGGGGTCACCTTGAGGTGCTGGGCCCTGGGCTTCTACCCTAA
GGAGATCTCCCTGACCTGGCAGCGGGAGGGCCAGGACCAGAGCCAGGACATGGAGCTGGT
GGAGACCAGGCCCTCAGGGGATGGGACCTTCCAGAAGTGGGCGGCCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCCCCGACCCGGAGGCTGAGGATCATGGGGCCTGGAGCCCTCTTCCTGCTGCTGTCGGG
GGCCCTGGCCCTGACCGGGACCCAGGCGGGTCCCCACTCCCTGAGGTATTTCGACACCGC
CGTGTCCCGGCCCGACCGCGGGGAGCCCCGCTTCATCGCCGTCGGCTACGTGGACGACAC
GCAGTTCGTGCGGTTCGACAGCGACGCCCCGAATCCGCGGATGGAGCCTCGGGTGCCGTG
GATACAGCAGGAGGGGCAGGACTATTGGGATGAGGAGACGCGGAAAGTCAAGGACAACGC
ACAGACTTACCGAGTGGACCTGAACACCCTGCGCGGCTACTACAACCAGAGCGAGGCCGG
GTCTCACACCATCCAGACCATGTACGGCTGCGACGTGGGACCAGACGGGCTCCTCCTCCG
CGGGTACAGACAGGACGCCTACGACGGCGCCGATTACATCGCCCTGAACGAGGACCTGCG
CTCCTGGACAGCGGCGGACATGGCGGCTCAGATCACCAAGCGCAAGTGGAAGGCGGCCCA
TGAGGCGGAGCGGATGAGGAGCTACCTGCAGGGCCGGTGTGTGGAGTGGCTCCAGAAATA
CCTGGAGATGGGGAAGGACACGCTGCAGCGCGCAGAGCCTCCAAAGACACATGTGACCCG
CCACCCCAGCTCTGACCTGGGGGTCACCTTGAGGTGCTGGGCCCTGGGCTTCTACCCTAA
GGAGATCTCCCTGACCTGGCAGCGGGAGGGCCAGGACCAGAGCCAGGACATGGAGCTGGT
GGAGACCAGGCCCTCAGGGGATGGGACCTTCCAGAAGTGGGCGGCCCT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q68VF6_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q68VF6_PIG

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               93-360, gnl|bosTau2|chr23 (21180741-21180474)
               

               
               93-360, gnl|Hg17|chr6 (30335574-30335841)
               

               
               93-360, gnl|Mm7|chr17 (33571220-33571487)
               


               
               393-643, gnl|bosTau2|chr20 (36655627-36655873)
               

               
               393-643, gnl|Hg17|chr6 (31347071-31346829)
               

               
               393-643, gnl|Mm7|chr17 (32077846-32077606)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               93-360, gnl|bosTau2|chr23 (21180741-21180474)
               

               
               93-360, gnl|Hg17|chr6 (30335574-30335841)
               

               
               93-360, gnl|Mm7|chr17 (33571220-33571487)
               


               
               393-643, gnl|bosTau2|chr20 (36655627-36655873)
               

               
               393-643, gnl|Hg17|chr6 (31347071-31346829)
               

               
               393-643, gnl|Mm7|chr17 (32077846-32077606)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cag (0.151194)
               

               
               jca (0.11396)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.151194)
               

               
               jca (0.11396)

	93-360, gnl\|bosTau2\|chr23 (21180741-21180474)
	93-360, gnl\|Hg17\|chr6 (30335574-30335841)
	93-360, gnl\|Mm7\|chr17 (33571220-33571487)

	393-643, gnl\|bosTau2\|chr20 (36655627-36655873)
	393-643, gnl\|Hg17\|chr6 (31347071-31346829)
	393-643, gnl\|Mm7\|chr17 (32077846-32077606)