Non-Coding RNA Search

Ss1.1-Tes1-TES01H050001.5

Sequence:


               
               AACTTTTCCGGGATAATGTCGCTACCCTGTCTTCAGATGTCGCTACCCTGTCTTCAGGAG
CCCATCAGAAATAGTTTAATAGATGACGCTAAGGCCCGCTTAAAAAAGCATGATGCTGGG
ACCAAATATTCTCACTTGCCATCTAGCAAATATTCCATCCTTTTACCACTGCTGGCTAAA
GAAGGAAAACTCTACCTGTTGCTCACCCTCCGGTCTGACAAGCTAAGAAGGTCACCCGGC
GAGGTCTGCTTTCCCGGAGGCAAGAGGGAACCTACAGACAAGGATGACATGGCCACGGCG
CTCAGGGAAGCCCAAGAGGAAGTGGGGCTGTGTCCTCACCAAGTGGAGGTCGTCTGCCGC
CTGGTGCCGCTGCTGATCGAAGGCAATGCACTGATAACCCCTGTGGTAGGATTTATAGAC
CACAACTTCCAGGCCACGCCTAACCCTGACGAAGTTAAGAATGTGTTCCTGGTGCCGCTG
GAATATTTCCTGCGTCCCCGTGTCTATCACCAGAATCACATAACACAATCTGGTTATCAT
GTTATTGTCCATTGCTTTGAATACACGGACCCTGAAGATGGTGTGACTTACTGTATCAGG
GGAATAACGGCAAAATGCGCCTTGCTCATTGCCTTAATTATTTTGGGGCAAAAACCTACC
TTTGAGATTGAATTTAATCTCAGCGATCTGATAGCATCCTCTGAAGAGACTTTCCTAAAG
CATTATAAACACACTACAAGCAAGTTGTGATTGATGAGACCAATATCCAAATAACAATCC
AAGCAGTGTTTGTGTTGTGCATGTTGATCCCCAGAAGAACAAGGGAATTCAACAGGTGGG
AATATTTTTCTTGCAATGTGGAAGGGAAAACCTTGTCTTTTTTCTTCCAGTTTTCCTCTC
TCATAAAAAAAGCAAAAGTCTTTCAAAAGCAGAAAAATATGGCTCTAGTGTTGCATCCAT
TTACAGTATGTCAAAAATATTTTTTCCTTACACATGTAAGCAAAGGATCAGGCACCGTGT
AGACACCTAATAAATTCTGTCGACTGGAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACTTTTCCGGGATAATGTCGCTACCCTGTCTTCAGATGTCGCTACCCTGTCTTCAGGAG
CCCATCAGAAATAGTTTAATAGATGACGCTAAGGCCCGCTTAAAAAAGCATGATGCTGGG
ACCAAATATTCTCACTTGCCATCTAGCAAATATTCCATCCTTTTACCACTGCTGGCTAAA
GAAGGAAAACTCTACCTGTTGCTCACCCTCCGGTCTGACAAGCTAAGAAGGTCACCCGGC
GAGGTCTGCTTTCCCGGAGGCAAGAGGGAACCTACAGACAAGGATGACATGGCCACGGCG
CTCAGGGAAGCCCAAGAGGAAGTGGGGCTGTGTCCTCACCAAGTGGAGGTCGTCTGCCGC
CTGGTGCCGCTGCTGATCGAAGGCAATGCACTGATAACCCCTGTGGTAGGATTTATAGAC
CACAACTTCCAGGCCACGCCTAACCCTGACGAAGTTAAGAATGTGTTCCTGGTGCCGCTG
GAATATTTCCTGCGTCCCCGTGTCTATCACCAGAATCACATAACACAATCTGGTTATCAT
GTTATTGTCCATTGCTTTGAATACACGGACCCTGAAGATGGTGTGACTTACTGTATCAGG
GGAATAACGGCAAAATGCGCCTTGCTCATTGCCTTAATTATTTTGGGGCAAAAACCTACC
TTTGAGATTGAATTTAATCTCAGCGATCTGATAGCATCCTCTGAAGAGACTTTCCTAAAG
CATTATAAACACACTACAAGCAAGTTGTGATTGATGAGACCAATATCCAAATAACAATCC
AAGCAGTGTTTGTGTTGTGCATGTTGATCCCCAGAAGAACAAGGGAATTCAACAGGTGGG
AATATTTTTCTTGCAATGTGGAAGGGAAAACCTTGTCTTTTTTCTTCCAGTTTTCCTCTC
TCATAAAAAAAGCAAAAGTCTTTCAAAAGCAGAAAAATATGGCTCTAGTGTTGCATCCAT
TTACAGTATGTCAAAAATATTTTTTCCTTACACATGTAAGCAAAGGATCAGGCACCGTGT
AGACACCTAATAAATTCTGTCGACTGGAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57087289|ref|XP_546823.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57087289|ref|XP_546823.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               67-227, gnl|bosTau2|chr18 (4446469-4446309)
               

               
               67-227, gnl|Hg17|chr16 (76316827-76316987)
               

               
               67-227, gnl|Mm7|chr8 (112735200-112735360)
               


               
               393-1005, gnl|bosTau2|chr18 (4440064-4439442)
               

               
               393-1005, gnl|Hg17|chr16 (76332991-76333610)
               

               
               393-1005, gnl|Mm7|chr8 (112750529-112751195)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               67-227, gnl|bosTau2|chr18 (4446469-4446309)
               

               
               67-227, gnl|Hg17|chr16 (76316827-76316987)
               

               
               67-227, gnl|Mm7|chr8 (112735200-112735360)
               


               
               393-1005, gnl|bosTau2|chr18 (4440064-4439442)
               

               
               393-1005, gnl|Hg17|chr16 (76332991-76333610)
               

               
               393-1005, gnl|Mm7|chr8 (112750529-112751195)

Expressed library(ies): 16 entry(ies)

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Expressed library(ies): 16 entry(ies)

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               cje (0.330469)
               

               
               ova (0.258264)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               nlu (0.191681)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               pty (0.142714)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)
               

               
               ldo (0.0970026)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.330469)
               

               
               ova (0.258264)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               nlu (0.191681)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               pty (0.142714)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)
               

               
               ldo (0.0970026)

	67-227, gnl\|bosTau2\|chr18 (4446469-4446309)
	67-227, gnl\|Hg17\|chr16 (76316827-76316987)
	67-227, gnl\|Mm7\|chr8 (112735200-112735360)

	393-1005, gnl\|bosTau2\|chr18 (4440064-4439442)
	393-1005, gnl\|Hg17\|chr16 (76332991-76333610)
	393-1005, gnl\|Mm7\|chr8 (112750529-112751195)

	cje (0.330469)
	ova (0.258264)
	tes (0.207814)
	hea (0.204499)
	nlu (0.191681)
	sag (0.182715)
	fty (0.17584)
	tbr (0.154178)
	isp (0.150376)
	pty (0.142714)
	ssp (0.13552)
	pla (0.133672)
	sug (0.127291)
	tra (0.123092)
	pgl (0.118483)
	ldo (0.0970026)