Non-Coding RNA Search

Ss1.1-Tes1-TES01H050018.5

Sequence:


               
               ACCGGTGGCCACGTTGTGATCTGCCTCCTGCTGTCCAGCACACAGGCCCCCATCCCAGAG
GGGTTTGCCCGCCACTGTCGCTGAATAAATTGCGTCATCGAGAGCCGGGAAGACCATTTT
TGCATCCCTCTTCGACTTCTGATGTACCTGCCATGACGTCATAGCTCTGCGAAGGTGTAA
GTCGATGTTGGTGAGACCTGACATAACCAGCCAGATACGAGGCCAAAGGTCTGCATGGAG
CCCAGAGGGACCAAGAGAGGAGCTGCAAAGATAAGAGTAGCTGAGCCCTGCAACAAACTC
CCTCGCCCAGCACCCTCACTGCCCACAGACCCTGCCCTCTACTCTGGGCCCTTTCCTTTC
TACCGGCGCCCTTCTGAACTGGGCTGCTTCTCCCTGGATACACAACGCCAGTACCATGGA
GATGCTCGAGCCTTGCGCTACTACAGTCCACCTCCCACCAACGGTCAGAGCCCCAACTTT
GACCTCAGAGATGGATACCCTGATCGATACCAGACCCGGGATGAAGAGGTCCAAGAGAGA
CTGGACCACCTGCTGCGCTGGCTCCTGGAGCACCGAGGCCAGCTGGAGGGGGGTCCCAGC
TGGCTGGCAGGGGCCACAGTGACGTGGCGGGGGCACCTGACAAAGTTACTGACGACACCA
TATGAGCGGCAGGAAGGCTGGCAGCTGGCAGCCTCCCGGTTCCAGGGGACGCTGTACCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCGGTGGCCACGTTGTGATCTGCCTCCTGCTGTCCAGCACACAGGCCCCCATCCCAGAG
GGGTTTGCCCGCCACTGTCGCTGAATAAATTGCGTCATCGAGAGCCGGGAAGACCATTTT
TGCATCCCTCTTCGACTTCTGATGTACCTGCCATGACGTCATAGCTCTGCGAAGGTGTAA
GTCGATGTTGGTGAGACCTGACATAACCAGCCAGATACGAGGCCAAAGGTCTGCATGGAG
CCCAGAGGGACCAAGAGAGGAGCTGCAAAGATAAGAGTAGCTGAGCCCTGCAACAAACTC
CCTCGCCCAGCACCCTCACTGCCCACAGACCCTGCCCTCTACTCTGGGCCCTTTCCTTTC
TACCGGCGCCCTTCTGAACTGGGCTGCTTCTCCCTGGATACACAACGCCAGTACCATGGA
GATGCTCGAGCCTTGCGCTACTACAGTCCACCTCCCACCAACGGTCAGAGCCCCAACTTT
GACCTCAGAGATGGATACCCTGATCGATACCAGACCCGGGATGAAGAGGTCCAAGAGAGA
CTGGACCACCTGCTGCGCTGGCTCCTGGAGCACCGAGGCCAGCTGGAGGGGGGTCCCAGC
TGGCTGGCAGGGGCCACAGTGACGTGGCGGGGGCACCTGACAAAGTTACTGACGACACCA
TATGAGCGGCAGGAAGGCTGGCAGCTGGCAGCCTCCCGGTTCCAGGGGACGCTGTACCTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|3372633|gb|AAC78604.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|3372633|gb|AAC78604.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               306-425, - strand, RNAz p=0.582641

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               306-425, - strand, RNAz p=0.582641

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               4-210, gnl|bosTau2|chr23 (23563480-23563276)
               

               
               4-210, gnl|canFam2|chr12 (4429300-4429745)
               

               
               4-210, gnl|dasNov1|scaffold_94602 (6861-6353)
               

               
               4-210, gnl|echTel1|scaffold_297223 (10385-10891)
               

               
               4-210, gnl|hg17|chr6 (32047499-32048056)
               

               
               4-210, gnl|Hg17|chr6 (32047872-32047677)
               

               
               4-210, gnl|loxAfr1|scaffold_5694 (72393-71848)
               

               
               4-210, gnl|mm7|chr17 (32933429-32933027)
               

               
               4-210, gnl|Mm7|chr17 (32933118-32933307)
               

               
               4-210, gnl|monDom2|scaffold_42 (17362544-17361856)
               

               
               4-210, gnl|oryCun1|scaffold_195381 (47893-48487)
               

               
               4-210, gnl|panTro1|chr5 (32450570-32451127)
               

               
               4-210, gnl|rheMac2|chr4 (31627420-31627982)
               

               
               4-210, gnl|rn3|chr20 (4095763-4096164)
               


               
               227-591, gnl|bosTau2|chr23 (23563054-23562690)
               

               
               227-591, gnl|Hg17|chr6 (32047439-32047075)
               

               
               227-591, gnl|Mm7|chr17 (32933449-32933813)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-210, gnl|bosTau2|chr23 (23563480-23563276)
               

               
               4-210, gnl|canFam2|chr12 (4429300-4429745)
               

               
               4-210, gnl|dasNov1|scaffold_94602 (6861-6353)
               

               
               4-210, gnl|echTel1|scaffold_297223 (10385-10891)
               

               
               4-210, gnl|hg17|chr6 (32047499-32048056)
               

               
               4-210, gnl|Hg17|chr6 (32047872-32047677)
               

               
               4-210, gnl|loxAfr1|scaffold_5694 (72393-71848)
               

               
               4-210, gnl|mm7|chr17 (32933429-32933027)
               

               
               4-210, gnl|Mm7|chr17 (32933118-32933307)
               

               
               4-210, gnl|monDom2|scaffold_42 (17362544-17361856)
               

               
               4-210, gnl|oryCun1|scaffold_195381 (47893-48487)
               

               
               4-210, gnl|panTro1|chr5 (32450570-32451127)
               

               
               4-210, gnl|rheMac2|chr4 (31627420-31627982)
               

               
               4-210, gnl|rn3|chr20 (4095763-4096164)
               


               
               227-591, gnl|bosTau2|chr23 (23563054-23562690)
               

               
               227-591, gnl|Hg17|chr6 (32047439-32047075)
               

               
               227-591, gnl|Mm7|chr17 (32933449-32933813)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               nlu (0.191681)
               

               
               pla (0.133672)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               pla (0.133672)

	4-210, gnl\|bosTau2\|chr23 (23563480-23563276)
	4-210, gnl\|canFam2\|chr12 (4429300-4429745)
	4-210, gnl\|dasNov1\|scaffold_94602 (6861-6353)
	4-210, gnl\|echTel1\|scaffold_297223 (10385-10891)
	4-210, gnl\|hg17\|chr6 (32047499-32048056)
	4-210, gnl\|Hg17\|chr6 (32047872-32047677)
	4-210, gnl\|loxAfr1\|scaffold_5694 (72393-71848)
	4-210, gnl\|mm7\|chr17 (32933429-32933027)
	4-210, gnl\|Mm7\|chr17 (32933118-32933307)
	4-210, gnl\|monDom2\|scaffold_42 (17362544-17361856)
	4-210, gnl\|oryCun1\|scaffold_195381 (47893-48487)
	4-210, gnl\|panTro1\|chr5 (32450570-32451127)
	4-210, gnl\|rheMac2\|chr4 (31627420-31627982)
	4-210, gnl\|rn3\|chr20 (4095763-4096164)

	227-591, gnl\|bosTau2\|chr23 (23563054-23562690)
	227-591, gnl\|Hg17\|chr6 (32047439-32047075)
	227-591, gnl\|Mm7\|chr17 (32933449-32933813)