Ss1.1-Tes1-TES01H050020.5.5
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TGGGCTGCCACGTAGGGTTTATAAAAACTTCCACGTGGCTAGGTCCTCACAACAGCCCTG
TGAGGTAGGGAGGGCGATGGTTACAATCCCATTTCACAGATGCCGACACTGAGGCCCGGA
CAACTGGTCGCAGGAGTCATCGTGAGCTGTCAAGTCCAGGGACCTTCTCTGAAAGGCCCT
CCGCAGAGGAGACGGCTCTGCTAGGCCTTCAGCTGCTGAAGAAAGCCCCTGATCCAGACT
CTTGGCGATGGCCGGGGGCTCAGGCAAGGGGACCCCGGGCCTCAGAAGATATCTGAGCGG
AGTGGAAGAGGCTGTTCCATGCCACTGATGAGGAGCTCAGGCTCTTGGGACAGCGTGGAG
GAAGTGGGCACCACTGAGGTCTCCGCACTGCCCATGGTAACCTCCCTTTCCTCCTGCCGA
AGGTGCCGGAGAATCTCCTGCGACAGGGAGAAGCTGCCTCCCTCTGTGGGTTCCTGGTAG
ACAATGAGGCGGCAGTTGTTCTGAGCCTCAGGCGCATCTGCCAGGATGTCTTCGAGGGTC
CGGCAGAAGAGTTTGGCCTGCTCGAGCCGATCCTCCCGGCTGAAGCCAGCGCGGCCATCC
TGTGACATGGCGAACAAGGTCTGCAAGGGAGTGGCGTACTCCAGGACACAGACGCCTGCC
GGCTGCCCGTTCTCCAGAAGCTCATAGATGCTGTTGGTGTACACCCGGCCCTTGATGCCA
GCACGGTCGGCACTTTGCTGGGGCAGCTCGTGCAGGAAGCGAATGTTGGGGTCAGCCACG
CTCAGGTCATCGGGCACCCCACAGTCCAACGGGAAGAGGATGTGCAGCCGGTGGTTCCCT
ATGCCCCCGAGTACGTTCTTGTGGCGCTGATTATAAGCTTGGATCCGAGCCCGGAGCCCT
GGGAGGATCAGCCGCAGGTACCCGATGTAATAAGACCAGGCCAGTCCATGAGCCACGTTG
AAGTTCCTTTTTTCACAGATTGCAGAGACTTCAGCTGGGGCCAGGTGCTGGAGGCCCAGG
AGGATGTTTAGGGCCTGCGAGAGGCCCAGGAGGGCCAGCATCCAGGGGAGGGGCAGGCCA
GCCTTGTCTCGGATGGAGAAGTAGAAGTAGCAGGACAGCAGCAGCAGGGCTCCACAGCGG
ATGGGGCAGCCCAGGCAGGCCCGCGCAGCCCTCCAGTAGCTGCTCTGGTACCTGGAGTGG
ACGTGGCACAGCTCCTCCGCCAGACTGCAGAGCCCCTTCACCAGCAGTCCTATCTGCTGG
GAGGCCAGGTGGAGCACCAGCCACCGGAGCGTGTATTCTGGCAGCTCCCCCAGCCCCCAA
AGGGCCACCAAGCAGGCACCTAGAAGGACCAAGGCTGCCACCTGAGCCCTGAGGCCCCTG
GGCTGTGGGATGGATGGATGCAGGCTGGAGTAGGGCATCTTCTGCCTCCCAGACCGCAGG
TTGTTTCTGGAAGACGGCAAGGGGAGAAGGTCCTGTCCAAGGGCTCCCAGCCCCACGGGG
CCTTTCAGGCTGCAACCCGAAAACGAAAGATTCAAAACAATCACAGCT
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Blue-coloured subsequences are predicted RNA structures by RNAz
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TGGGCTGCCACGTAGGGTTTATAAAAACTTCCACGTGGCTAGGTCCTCACAACAGCCCTG
TGAGGTAGGGAGGGCGATGGTTACAATCCCATTTCACAGATGCCGACACTGAGGCCCGGA
CAACTGGTCGCAGGAGTCATCGTGAGCTGTCAAGTCCAGGGACCTTCTCTGAAAGGCCCT
CCGCAGAGGAGACGGCTCTGCTAGGCCTTCAGCTGCTGAAGAAAGCCCCTGATCCAGACT
CTTGGCGATGGCCGGGGGCTCAGGCAAGGGGACCCCGGGCCTCAGAAGATATCTGAGCGG
AGTGGAAGAGGCTGTTCCATGCCACTGATGAGGAGCTCAGGCTCTTGGGACAGCGTGGAG
GAAGTGGGCACCACTGAGGTCTCCGCACTGCCCATGGTAACCTCCCTTTCCTCCTGCCGA
AGGTGCCGGAGAATCTCCTGCGACAGGGAGAAGCTGCCTCCCTCTGTGGGTTCCTGGTAG
ACAATGAGGCGGCAGTTGTTCTGAGCCTCAGGCGCATCTGCCAGGATGTCTTCGAGGGTC
CGGCAGAAGAGTTTGGCCTGCTCGAGCCGATCCTCCCGGCTGAAGCCAGCGCGGCCATCC
TGTGACATGGCGAACAAGGTCTGCAAGGGAGTGGCGTACTCCAGGACACAGACGCCTGCC
GGCTGCCCGTTCTCCAGAAGCTCATAGATGCTGTTGGTGTACACCCGGCCCTTGATGCCA
GCACGGTCGGCACTTTGCTGGGGCAGCTCGTGCAGGAAGCGAATGTTGGGGTCAGCCACG
CTCAGGTCATCGGGCACCCCACAGTCCAACGGGAAGAGGATGTGCAGCCGGTGGTTCCCT
ATGCCCCCGAGTACGTTCTTGTGGCGCTGATTATAAGCTTGGATCCGAGCCCGGAGCCCT
GGGAGGATCAGCCGCAGGTACCCGATGTAATAAGACCAGGCCAGTCCATGAGCCACGTTG
AAGTTCCTTTTTTCACAGATTGCAGAGACTTCAGCTGGGGCCAGGTGCTGGAGGCCCAGG
AGGATGTTTAGGGCCTGCGAGAGGCCCAGGAGGGCCAGCATCCAGGGGAGGGGCAGGCCA
GCCTTGTCTCGGATGGAGAAGTAGAAGTAGCAGGACAGCAGCAGCAGGGCTCCACAGCGG
ATGGGGCAGCCCAGGCAGGCCCGCGCAGCCCTCCAGTAGCTGCTCTGGTACCTGGAGTGG
ACGTGGCACAGCTCCTCCGCCAGACTGCAGAGCCCCTTCACCAGCAGTCCTATCTGCTGG
GAGGCCAGGTGGAGCACCAGCCACCGGAGCGTGTATTCTGGCAGCTCCCCCAGCCCCCAA
AGGGCCACCAAGCAGGCACCTAGAAGGACCAAGGCTGCCACCTGAGCCCTGAGGCCCCTG
GGCTGTGGGATGGATGGATGCAGGCTGGAGTAGGGCATCTTCTGCCTCCCAGACCGCAGG
TTGTTTCTGGAAGACGGCAAGGGGAGAAGGTCCTGTCCAAGGGCTCCCAGCCCCACGGGG
CCTTTCAGGCTGCAACCCGAAAACGAAAGATTCAAAACAATCACAGCT
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gi|61809617|ref|XP_589165.1| |
Protein identifier
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gi|61809617|ref|XP_589165.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
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203-473, gnl|bosTau2|chr7 (45623915-45623646) |
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203-473, gnl|Hg17|chr5 (138835952-138836224) |
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203-473, gnl|Mm7|chr18 (36110529-36110800) |
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659-907, gnl|bosTau2|chr7 (45622085-45621836) |
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659-907, gnl|Hg17|chr5 (138838038-138838287) |
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659-907, gnl|Mm7|chr18 (36111979-36112228) |
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1190-1420, gnl|bosTau2|chr7 (45619998-45619768) |
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1190-1420, gnl|canFam2|chr2 (37637520-37637764) |
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1190-1420, gnl|echTel1|scaffold_213423 (5938-5691) |
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1190-1420, gnl|galGal2|chr13 (288991-289252) |
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1190-1420, gnl|hg17|chr5 (138841244-138841488) |
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1190-1420, gnl|Hg17|chr5 (138841245-138841475) |
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1190-1420, gnl|mm7|chr18 (36115449-36115693) |
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1190-1420, gnl|Mm7|chr18 (36115450-36115680) |
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1190-1420, gnl|monDom2|scaffold_6 (69586618-69586372) |
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1190-1420, gnl|oryCun1|scaffold_209245 (44354-44598) |
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1190-1420, gnl|panTro1|chr4 (145449397-145449641) |
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1190-1420, gnl|rheMac2|chr6 (135911431-135911675) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
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203-473, gnl|bosTau2|chr7 (45623915-45623646) |
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203-473, gnl|Hg17|chr5 (138835952-138836224) |
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203-473, gnl|Mm7|chr18 (36110529-36110800) |
| |
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659-907, gnl|bosTau2|chr7 (45622085-45621836) |
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659-907, gnl|Hg17|chr5 (138838038-138838287) |
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659-907, gnl|Mm7|chr18 (36111979-36112228) |
| |
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1190-1420, gnl|bosTau2|chr7 (45619998-45619768) |
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1190-1420, gnl|canFam2|chr2 (37637520-37637764) |
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1190-1420, gnl|echTel1|scaffold_213423 (5938-5691) |
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1190-1420, gnl|galGal2|chr13 (288991-289252) |
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1190-1420, gnl|hg17|chr5 (138841244-138841488) |
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1190-1420, gnl|Hg17|chr5 (138841245-138841475) |
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1190-1420, gnl|mm7|chr18 (36115449-36115693) |
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1190-1420, gnl|Mm7|chr18 (36115450-36115680) |
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1190-1420, gnl|monDom2|scaffold_6 (69586618-69586372) |
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1190-1420, gnl|oryCun1|scaffold_209245 (44354-44598) |
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1190-1420, gnl|panTro1|chr4 (145449397-145449641) |
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1190-1420, gnl|rheMac2|chr6 (135911431-135911675) |
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cga (0.279096) |
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med (0.232504) |
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mas (0.210305) |
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ton (0.1755) |
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cag (0.151194) |
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hlv (0.139256) |
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che (0.136314) |
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cov (0.132153) |
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ese (0.126502) |
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eru (0.120048) |
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cty (0.10408) |
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cga (0.279096) |
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med (0.232504) |
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mas (0.210305) |
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ton (0.1755) |
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cag (0.151194) |
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hlv (0.139256) |
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che (0.136314) |
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cov (0.132153) |
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ese (0.126502) |
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eru (0.120048) |
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cty (0.10408) |
