Non-Coding RNA Search

Ss1.1-Tes1-TES01H050065.5

Sequence:


               
               GCGCTTGCAGGCGCGGCCGCAGCTTGAGAAGTCTTGCTTGAGGTCTAACCCGAGATCTTC
TTGCTGCAGTCCTGTCTGTGGCATCCGGTGTTTCCACCTTTTAGGTTCAGCTTCACCCTC
TTCTCCCAGATGGCCCTTCCTTAACCCCTCCTCAGCCTCTGCCACCCGGAGGCTGCTTCT
CCCAGCCAGAGAGTTTCAAGTGGCCCAGCGGGTTCGGTATGAGGGATGGGACCCAGCGGC
GAGCGCAGAGGAGAGCCACAGGCCAAGCCTGGACCATGATGCCTGACTCCTTGCCCATAC
CACCCTCCCATGGCCTCCCAGCCGGGGCCACGTTGATGTTGTAACACAGCAGGGGGCCTG
CAGACGAATGGATTCCTTAAAGCAGAAGAGGAGCACGATCAGAGGCCAGACCAGGAGCTG
ACCTGGAGCTGGGGCCACAGGCCTAGGAGCACCCTGGACAGAGCTAAGGCCATGGCCCCC
CCACCGCCACTGCCCCTGACCGCCAGCACCCCACTCCTGCATGGCGAGTTTGGTTCCTAC
CCAGCCCGAGGCCCACGCTTTGCCCTCACTCTCACACCACAAGCCCTGCACATCCAGCGG
CTGCGCCCGAAGCCTGAAGCCCGGCCACGGGGTGGCCTGGTCCTGCTGGCCGAGGTCTCA
GGCTGCTGCACCCTGCGGAGCCGGAGCCCCTCAGACTCGGCAGCCTACTTCTGCATCTAT
ACCTACCCGAGGGGCCGGCGCGGGGGCCGGCGCAGAGCTGCACGTACCTTCCGAGCCGAC
GAGGCAGCCACCTATGAGGAGAACCGTGCTGAGGCCCAGCGCTGGGCCACTGCCCTCACG
TGTCTGCTCCGCGGGCTGCCGCTGCCTGGGGACGGGGACATCACCCCTGGACTTCTGCCT
CGGCCGCCCCGATTGCTCCTACTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGCTTGCAGGCGCGGCCGCAGCTTGAGAAGTCTTGCTTGAGGTCTAACCCGAGATCTTC
TTGCTGCAGTCCTGTCTGTGGCATCCGGTGTTTCCACCTTTTAGGTTCAGCTTCACCCTC
TTCTCCCAGATGGCCCTTCCTTAACCCCTCCTCAGCCTCTGCCACCCGGAGGCTGCTTCT
CCCAGCCAGAGAGTTTCAAGTGGCCCAGCGGGTTCGGTATGAGGGATGGGACCCAGCGGC
GAGCGCAGAGGAGAGCCACAGGCCAAGCCTGGACCATGATGCCTGACTCCTTGCCCATAC
CACCCTCCCATGGCCTCCCAGCCGGGGCCACGTTGATGTTGTAACACAGCAGGGGGCCTG
CAGACGAATGGATTCCTTAAAGCAGAAGAGGAGCACGATCAGAGGCCAGACCAGGAGCTG
ACCTGGAGCTGGGGCCACAGGCCTAGGAGCACCCTGGACAGAGCTAAGGCCATGGCCCCC
CCACCGCCACTGCCCCTGACCGCCAGCACCCCACTCCTGCATGGCGAGTTTGGTTCCTAC
CCAGCCCGAGGCCCACGCTTTGCCCTCACTCTCACACCACAAGCCCTGCACATCCAGCGG
CTGCGCCCGAAGCCTGAAGCCCGGCCACGGGGTGGCCTGGTCCTGCTGGCCGAGGTCTCA
GGCTGCTGCACCCTGCGGAGCCGGAGCCCCTCAGACTCGGCAGCCTACTTCTGCATCTAT
ACCTACCCGAGGGGCCGGCGCGGGGGCCGGCGCAGAGCTGCACGTACCTTCCGAGCCGAC
GAGGCAGCCACCTATGAGGAGAACCGTGCTGAGGCCCAGCGCTGGGCCACTGCCCTCACG
TGTCTGCTCCGCGGGCTGCCGCTGCCTGGGGACGGGGACATCACCCCTGGACTTCTGCCT
CGGCCGCCCCGATTGCTCCTACTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61855484|ref|XP_585893.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61855484|ref|XP_585893.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               8-515, - strand, RNAz p=0.961118

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               8-515, - strand, RNAz p=0.961118

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               8-253, gnl|bosTau2|chr18 (50557083-50556838)
               

               
               8-253, gnl|Mm7|chr7 (41893891-41893631)
               


               
               400-877, gnl|bosTau2|chr18 (50553272-50552801)
               

               
               400-877, gnl|Hg17|chr19 (53820957-53821431)
               

               
               400-877, gnl|Mm7|chr7 (41890005-41889534)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-253, gnl|bosTau2|chr18 (50557083-50556838)
               

               
               8-253, gnl|Mm7|chr7 (41893891-41893631)
               


               
               400-877, gnl|bosTau2|chr18 (50553272-50552801)
               

               
               400-877, gnl|Hg17|chr19 (53820957-53821431)
               

               
               400-877, gnl|Mm7|chr7 (41890005-41889534)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	8-253, gnl\|bosTau2\|chr18 (50557083-50556838)
	8-253, gnl\|Mm7\|chr7 (41893891-41893631)

	400-877, gnl\|bosTau2\|chr18 (50553272-50552801)
	400-877, gnl\|Hg17\|chr19 (53820957-53821431)
	400-877, gnl\|Mm7\|chr7 (41890005-41889534)