Non-Coding RNA Search

Ss1.1-Tes1-TES01H060013.5

Sequence:


               
               ATCTATATTTTAAAGGTACACATCTCACACACAACATGTACTTATCCACACGAGCACACA
TGTGCACACGTTACGTGTGCTCACCTCCCTGGGTCTGGGAGGTCCCTACCAGGTGGCCTC
CCTCGGCCCCAGGCCAGGTGGTGGAGTCCTAGGCACGCAGAAGTCCCAGGCCAGGGACTG
CACCTGAGCCACGGCAGTGACACCCCGGACCCTCAGTCCGCTAGGTCCTCAGGGAGCCCC
AGGCCAGGGTTCTTGAGAAGCTCCTGGAAGAAGAGCTGTAGCTGGAGGCTCCGTAGGCTC
TCCAGGCCCTCAGGGGCCAGCGGCTGCTCCTCCTCCCCCTCCGCCTCCCCTGGCGGGTCA
GGCAGCTGTGGGGATGCCCTGGAGATGTAGCCCTGGTCAGACTGCACAGACTGCCGCTGC
TTCTCTCCATGTGGTGTGAGCAGGTCCTGGGCCCTGCAGCTTGTGCTCTGCTGGAGGAGT
GGGAGCAATGAGCCATCAAGCTGCCCTCTCGACCACTCCGGCGGCCGGGTGGGTGATGAT
GTCGGGGTGCTGTGGGCAGGCGCGTCCTCGGGGTGCACGGGCAGGAAGAGGACACTGTTC
CGCCAGGGGCCGTGGCCCGCCAGCAGCGGGCAGGCCTCACCTGCCCCAACCAGGGCCAGC
CGGCCGGGGCCGCTCCCCACAGCGCGAGGGATGGGCTCCACCGTCTGCGTGGGAGGGACC
GTCTCCATGGGGACCACTGAGGTCTGGAGTGTCTGGGCTGCCAGCAGCTGTCCCCAGGGC
TGAGACTGGGGCTCCAGCTTCCATGGGCCCCCTCCTTCCTCCGAGAGAAGCAGCTCTACC
ATCAAAGGGTCCTCAGAGGCGGGTTCCCGCACCAGGGGCTCCTGTCGGATGATCCCTCCT
CCCAGAGGTGGCAGCGGCTCCTCGAACGCCTCCTCCTCCAGGGACCAGAGGTCCCGGTCC
TCTGCTGACCGGAGGTTCTCGAGCTCGAACCAGTCGGGGCGCCGGGCCTGCCAGCGGCGG
AAGCGCTGCACAGCCTCGCAGAGCTGCCGGCCGCTGGGGCTCTGCAGGTAGTTCTCGGCC
GTGAGCGCCCCGACGCGGTGCATGCGGCCCGGCCCGAACATCTCCAGGTCCTGGATGCGG
AAGTAAACCTCCTCGAACTTGTCCATGAGCGCGTATCGGGAGGTGATGTTGAAGAGGTCG
GGGACATCGCCCTCGCTGCTGATGTCGCTGAAGTAGCAGATGATGTAGGTGCCAAAGCAG
GCTGGCCTCTTGAAGTCCGGCAGGATCATGTTCATGGCCGCCGTGAACAGGTCCCCTGCG
GGCTTCCCGCGGTCACAGCGCAGCTGGACGGCGGCGTCCTCCCAGCCGAGGATGGCCTGC
CACTTGGCCCGGGTGCCCCTCGAGCACAGGACGATGATCTTGGAGTCGCTGGCCACCATC
TCCTGCTTCTGGCGGCCCACCCAGGTCATGACCCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCTATATTTTAAAGGTACACATCTCACACACAACATGTACTTATCCACACGAGCACACA
TGTGCACACGTTACGTGTGCTCACCTCCCTGGGTCTGGGAGGTCCCTACCAGGTGGCCTC
CCTCGGCCCCAGGCCAGGTGGTGGAGTCCTAGGCACGCAGAAGTCCCAGGCCAGGGACTG
CACCTGAGCCACGGCAGTGACACCCCGGACCCTCAGTCCGCTAGGTCCTCAGGGAGCCCC
AGGCCAGGGTTCTTGAGAAGCTCCTGGAAGAAGAGCTGTAGCTGGAGGCTCCGTAGGCTC
TCCAGGCCCTCAGGGGCCAGCGGCTGCTCCTCCTCCCCCTCCGCCTCCCCTGGCGGGTCA
GGCAGCTGTGGGGATGCCCTGGAGATGTAGCCCTGGTCAGACTGCACAGACTGCCGCTGC
TTCTCTCCATGTGGTGTGAGCAGGTCCTGGGCCCTGCAGCTTGTGCTCTGCTGGAGGAGT
GGGAGCAATGAGCCATCAAGCTGCCCTCTCGACCACTCCGGCGGCCGGGTGGGTGATGAT
GTCGGGGTGCTGTGGGCAGGCGCGTCCTCGGGGTGCACGGGCAGGAAGAGGACACTGTTC
CGCCAGGGGCCGTGGCCCGCCAGCAGCGGGCAGGCCTCACCTGCCCCAACCAGGGCCAGC
CGGCCGGGGCCGCTCCCCACAGCGCGAGGGATGGGCTCCACCGTCTGCGTGGGAGGGACC
GTCTCCATGGGGACCACTGAGGTCTGGAGTGTCTGGGCTGCCAGCAGCTGTCCCCAGGGC
TGAGACTGGGGCTCCAGCTTCCATGGGCCCCCTCCTTCCTCCGAGAGAAGCAGCTCTACC
ATCAAAGGGTCCTCAGAGGCGGGTTCCCGCACCAGGGGCTCCTGTCGGATGATCCCTCCT
CCCAGAGGTGGCAGCGGCTCCTCGAACGCCTCCTCCTCCAGGGACCAGAGGTCCCGGTCC
TCTGCTGACCGGAGGTTCTCGAGCTCGAACCAGTCGGGGCGCCGGGCCTGCCAGCGGCGG
AAGCGCTGCACAGCCTCGCAGAGCTGCCGGCCGCTGGGGCTCTGCAGGTAGTTCTCGGCC
GTGAGCGCCCCGACGCGGTGCATGCGGCCCGGCCCGAACATCTCCAGGTCCTGGATGCGG
AAGTAAACCTCCTCGAACTTGTCCATGAGCGCGTATCGGGAGGTGATGTTGAAGAGGTCG
GGGACATCGCCCTCGCTGCTGATGTCGCTGAAGTAGCAGATGATGTAGGTGCCAAAGCAG
GCTGGCCTCTTGAAGTCCGGCAGGATCATGTTCATGGCCGCCGTGAACAGGTCCCCTGCG
GGCTTCCCGCGGTCACAGCGCAGCTGGACGGCGGCGTCCTCCCAGCCGAGGATGGCCTGC
CACTTGGCCCGGGTGCCCCTCGAGCACAGGACGATGATCTTGGAGTCGCTGGCCACCATC
TCCTGCTTCTGGCGGCCCACCCAGGTCATGACCCCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               I17RA_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               I17RA_HUMAN

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               236-450, gnl|bosTau2|chr5 (66211359-66211127)
               

               
               236-450, gnl|Hg17|chr22 (15965228-15964949)
               

               
               236-450, gnl|Mm7|chr6 (120507746-120507515)
               


               
               578-1475, gnl|bosTau2|chr5 (66211089-66210192)
               

               
               578-1475, gnl|Hg17|chr22 (15964824-15963933)
               

               
               578-1475, gnl|Mm7|chr6 (120507354-120506466)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               236-450, gnl|bosTau2|chr5 (66211359-66211127)
               

               
               236-450, gnl|Hg17|chr22 (15965228-15964949)
               

               
               236-450, gnl|Mm7|chr6 (120507746-120507515)
               


               
               578-1475, gnl|bosTau2|chr5 (66211089-66210192)
               

               
               578-1475, gnl|Hg17|chr22 (15964824-15963933)
               

               
               578-1475, gnl|Mm7|chr6 (120507354-120506466)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jca (0.11396)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.11396)

	236-450, gnl\|bosTau2\|chr5 (66211359-66211127)
	236-450, gnl\|Hg17\|chr22 (15965228-15964949)
	236-450, gnl\|Mm7\|chr6 (120507746-120507515)

	578-1475, gnl\|bosTau2\|chr5 (66211089-66210192)
	578-1475, gnl\|Hg17\|chr22 (15964824-15963933)
	578-1475, gnl\|Mm7\|chr6 (120507354-120506466)