Ss1.1-Tes1-TES01H070016.5.541
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGTGTCCCGGCCCGACCGCGGGGACTCCCGCTTCATCGCCGTCGGCTACGTGGACGACA CGCAGTTCGTGCGGTTCGACAGCGACGCCCCGAATCCGCGGATGGAGCCTCGGGTGCCGT GGATACAGCAGGAGGGGCAGGAGTATTGGGATCGGGAGACGCGGAATGTCAAGGAAACCG CACAGACTTACCGAGTGGGCCTGAACACCCTGCGCGGCTACTACAACCAGAGCGAGGCCG GGTCTCACACCCTCCAGAGCATGTACGGCTGCTACTTGGGACCAGACGGGCTCCTCCTCC ACGGGTACAGACAGGACGCCTACGACGGCGCCGATTACATCGCCCTGAACGAGGACCTGC GCTCCTGGACCGCGGCGGACATGGCGGCTCAGATCACCAAGCGCAAGTGGGAGGCGGCCG ATGTGGCGGAGCGTAGGAGGAGCTACCTGCAGGGACTGTGTGTGGAGTGGCTCCAGAAAT ACCTGGAGATGGGGAAGGACACGCTGCAGCGCGCAGAGCCTCCAAAGACACATGTGACCC GCCACCCCAGCTCTGACCTCGGGGTCACCTTGAGGTGCTGGGCCCTGGGCTTCTACCCTA AGGAGATCTCCCTGACCTGGCAGCGGGAGGGCCAGGACCAGAGCCAGGACATGGAGCTGG TGGAGACCAGGCCCTCAGGGGATGGGACCTTCCAGAAGTGGGCGGCCCTGGTGGTGCCTC CTGGAGAGGAGCAGAGCTACACCTGCCATGTGCAGCACGAGGGCCTGCAGGAGCCCCTCA CCCTGAGATGGGACCCTGCTCAGCCCCCCGTCCCCATCGTGGGCATCATTGTTGGCCTGG TTCTGGTCCTGGTCGCTGGAGCTGTGGTGGCTGGAGTTGTGATCTGGAGGAAGACGCGCT CAGGTGAAAAAGGAGGGAGCTACACTCAGGCTGCAGGCAGTGACAGTGACCAGGGCTCCG ATGTGTCCCTTACCAAGGATCCTAGAGTGTGAGACAGCTGCCTTGTGGGAACTGAGGGAC ACAAGATTTGTTCACGTCCCACTTTGTGAATCCAGATCCCCTGACTCCTGTTTCTGCAGC TGCCTCTGAAAGGGTCTGTGTTCCTATGAGCATCCTGAGAGGAGGTGGGGACCCTGGCCC CCACGTCCCCTCCTCACCCTGACCTGTGTTCTCTTCCATGATCCTCTTTCCAGTTCTTGC AAGTGGGAGCCGGGCGGGGGGAGGGGGGGCACTGGACCATCTCCATCCTTACTTAACTTG ACTGCCCTGAGTAATGACTTCCTGTTGAATTTGCTTTTTCTAATTGGTGCCATGAGGAGT TGAGGGGATAATAAATGAGAGATTTCCTATGTTTGAAAGAGGAAATAAATGGAAGGATTG AGAACCTTCCAGAATCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGTGTCCCGGCCCGACCGCGGGGACTCCCGCTTCATCGCCGTCGGCTACGTGGACGACA CGCAGTTCGTGCGGTTCGACAGCGACGCCCCGAATCCGCGGATGGAGCCTCGGGTGCCGT GGATACAGCAGGAGGGGCAGGAGTATTGGGATCGGGAGACGCGGAATGTCAAGGAAACCG CACAGACTTACCGAGTGGGCCTGAACACCCTGCGCGGCTACTACAACCAGAGCGAGGCCG GGTCTCACACCCTCCAGAGCATGTACGGCTGCTACTTGGGACCAGACGGGCTCCTCCTCC ACGGGTACAGACAGGACGCCTACGACGGCGCCGATTACATCGCCCTGAACGAGGACCTGC GCTCCTGGACCGCGGCGGACATGGCGGCTCAGATCACCAAGCGCAAGTGGGAGGCGGCCG ATGTGGCGGAGCGTAGGAGGAGCTACCTGCAGGGACTGTGTGTGGAGTGGCTCCAGAAAT ACCTGGAGATGGGGAAGGACACGCTGCAGCGCGCAGAGCCTCCAAAGACACATGTGACCC GCCACCCCAGCTCTGACCTCGGGGTCACCTTGAGGTGCTGGGCCCTGGGCTTCTACCCTA AGGAGATCTCCCTGACCTGGCAGCGGGAGGGCCAGGACCAGAGCCAGGACATGGAGCTGG TGGAGACCAGGCCCTCAGGGGATGGGACCTTCCAGAAGTGGGCGGCCCTGGTGGTGCCTC CTGGAGAGGAGCAGAGCTACACCTGCCATGTGCAGCACGAGGGCCTGCAGGAGCCCCTCA CCCTGAGATGGGACCCTGCTCAGCCCCCCGTCCCCATCGTGGGCATCATTGTTGGCCTGG TTCTGGTCCTGGTCGCTGGAGCTGTGGTGGCTGGAGTTGTGATCTGGAGGAAGACGCGCT CAGGTGAAAAAGGAGGGAGCTACACTCAGGCTGCAGGCAGTGACAGTGACCAGGGCTCCG ATGTGTCCCTTACCAAGGATCCTAGAGTGTGAGACAGCTGCCTTGTGGGAACTGAGGGAC ACAAGATTTGTTCACGTCCCACTTTGTGAATCCAGATCCCCTGACTCCTGTTTCTGCAGC TGCCTCTGAAAGGGTCTGTGTTCCTATGAGCATCCTGAGAGGAGGTGGGGACCCTGGCCC CCACGTCCCCTCCTCACCCTGACCTGTGTTCTCTTCCATGATCCTCTTTCCAGTTCTTGC AAGTGGGAGCCGGGCGGGGGGAGGGGGGGCACTGGACCATCTCCATCCTTACTTAACTTG ACTGCCCTGAGTAATGACTTCCTGTTGAATTTGCTTTTTCTAATTGGTGCCATGAGGAGT TGAGGGGATAATAAATGAGAGATTTCCTATGTTTGAAAGAGGAAATAAATGGAAGGATTG AGAACCTTCCAGAATCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 613-781, - strand, RNAz p=0.996054 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 613-781, - strand, RNAz p=0.996054 |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 1-241, gnl|bosTau2|chr23 (21180714-21180474) | |
| 1-241, gnl|Hg17|chr6 (30335601-30335841) | |
| 1-241, gnl|Mm7|chr17 (33571247-33571487) | |
| 274-524, gnl|bosTau2|chr20 (36655627-36655873) | |
| 274-524, gnl|Hg17|chr6 (31347071-31346829) | |
| 274-524, gnl|Mm7|chr17 (32077846-32077606) | |
| 574-781, gnl|bosTau2|chr23 (24252946-24252736) | |
| 574-781, gnl|Hg17|chr6 (26200946-26201156) | |
| 574-781, gnl|Mm7|chr13 (23071884-23071674) | |
| 792-919, gnl|bosTau2|chr23 (23047794-23047665) | |
| 792-919, gnl|canFam2|chr12 (3938333-3938669) | |
| 792-919, gnl|dasNov1|scaffold_10933 (27709-28037) | |
| 792-919, gnl|echTel1|scaffold_220899 (9340-9001) | |
| 792-919, gnl|galGal2|chr16_random (271111-271395) | |
| 792-919, gnl|hg17|chr6 (30004005-30004367) | |
| 792-919, gnl|Hg17|chr6 (30004212-30004350) | |
| 792-919, gnl|loxAfr1|scaffold_35258 (6115-5789) | |
| 792-919, gnl|mm7|chr17 (35139276-35138931) | |
| 792-919, gnl|Mm7|chr17 (34472588-34472477) | |
| 792-919, gnl|monDom2|scaffold_42 (15844035-15844404) | |
| 792-919, gnl|oryCun1|scaffold_176700 (53005-53361) | |
| 792-919, gnl|panTro1|chr5 (30480794-30481160) | |
| 792-919, gnl|rheMac2|chr4 (30877587-30877274) | |
| 792-919, gnl|rn3|chr20 (1647265-1647597) | |
| 986-1395, gnl|bosTau2|chr23 (24592887-24593301) | |
| 986-1395, gnl|Hg17|chr6 (30338262-30338709) | |
| 986-1395, gnl|Mm7|chr17 (33574982-33575409) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-241, gnl|bosTau2|chr23 (21180714-21180474) | |
| 1-241, gnl|Hg17|chr6 (30335601-30335841) | |
| 1-241, gnl|Mm7|chr17 (33571247-33571487) | |
| 274-524, gnl|bosTau2|chr20 (36655627-36655873) | |
| 274-524, gnl|Hg17|chr6 (31347071-31346829) | |
| 274-524, gnl|Mm7|chr17 (32077846-32077606) | |
| 574-781, gnl|bosTau2|chr23 (24252946-24252736) | |
| 574-781, gnl|Hg17|chr6 (26200946-26201156) | |
| 574-781, gnl|Mm7|chr13 (23071884-23071674) | |
| 792-919, gnl|bosTau2|chr23 (23047794-23047665) | |
| 792-919, gnl|canFam2|chr12 (3938333-3938669) | |
| 792-919, gnl|dasNov1|scaffold_10933 (27709-28037) | |
| 792-919, gnl|echTel1|scaffold_220899 (9340-9001) | |
| 792-919, gnl|galGal2|chr16_random (271111-271395) | |
| 792-919, gnl|hg17|chr6 (30004005-30004367) | |
| 792-919, gnl|Hg17|chr6 (30004212-30004350) | |
| 792-919, gnl|loxAfr1|scaffold_35258 (6115-5789) | |
| 792-919, gnl|mm7|chr17 (35139276-35138931) | |
| 792-919, gnl|Mm7|chr17 (34472588-34472477) | |
| 792-919, gnl|monDom2|scaffold_42 (15844035-15844404) | |
| 792-919, gnl|oryCun1|scaffold_176700 (53005-53361) | |
| 792-919, gnl|panTro1|chr5 (30480794-30481160) | |
| 792-919, gnl|rheMac2|chr4 (30877587-30877274) | |
| 792-919, gnl|rn3|chr20 (1647265-1647597) | |
| 986-1395, gnl|bosTau2|chr23 (24592887-24593301) | |
| 986-1395, gnl|Hg17|chr6 (30338262-30338709) | |
| 986-1395, gnl|Mm7|chr17 (33574982-33575409) |
| Expressed library(ies): 32 entry(ies) | More info |
| Expressed library(ies): 32 entry(ies) | Help | Less info |
| jej (7.91374) | |
| cag (3.77986) | |
| ill (3.51185) | |
| cly (2.41284) | |
| cga (1.67457) | |
| cje (1.65235) | |
| cov (1.58583) | |
| lnt (1.13847) | |
| csp (1.1283) | |
| cli (1.06968) | |
| cst (0.840218) | |
| duo (0.691204) | |
| col (0.585023) | |
| che (0.408942) | |
| nlu (0.383362) | |
| clu (0.358938) | |
| ton (0.351) | |
| med (0.348756) | |
| cty (0.31224) | |
| nmm (0.265604) | |
| pgl (0.236967) | |
| ece (0.229305) | |
| mas (0.210305) | |
| cmu (0.186393) | |
| rec (0.17307) | |
| cut (0.169924) | |
| nje (0.16592) | |
| nco (0.161734) | |
| ute (0.132784) | |
| eru (0.120048) | |
| cbl (0.114797) | |
| jca (0.11396) |
| Expressed library(ies): 32 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| jej (7.91374) | |
| cag (3.77986) | |
| ill (3.51185) | |
| cly (2.41284) | |
| cga (1.67457) | |
| cje (1.65235) | |
| cov (1.58583) | |
| lnt (1.13847) | |
| csp (1.1283) | |
| cli (1.06968) | |
| cst (0.840218) | |
| duo (0.691204) | |
| col (0.585023) | |
| che (0.408942) | |
| nlu (0.383362) | |
| clu (0.358938) | |
| ton (0.351) | |
| med (0.348756) | |
| cty (0.31224) | |
| nmm (0.265604) | |
| pgl (0.236967) | |
| ece (0.229305) | |
| mas (0.210305) | |
| cmu (0.186393) | |
| rec (0.17307) | |
| cut (0.169924) | |
| nje (0.16592) | |
| nco (0.161734) | |
| ute (0.132784) | |
| eru (0.120048) | |
| cbl (0.114797) | |
| jca (0.11396) |