Non-Coding RNA Search

Ss1.1-Tes1-TES01H070038.5

Sequence:


               
               CTCGTGAGCGACCAGAGCCGCTTCGCCAAGGAAGTGCTACCCCAATACTTCAAGCACAGC
AACATGGCCAGCTTTGTGCGGCAACTCAATATGTACGGTTTTCGGAAGGTGGTGAGCATC
GAGCAGGGCGGCCTGCTCAGGCCAGAACGAGACCACGTCGAGTTCCAGCATCCGAGCTTC
GTACGCGGCCGCGAGCAACTACTGGAACGCGTGCGGCGCAAGGTGCCGGCGCTGCGCAGC
GACGACGGCCGCTGGCGCCCTGAGGACCTGGGCCGGCCTTTCCCCCAGGCAGAACGAGAT
CTTATGGAGGGAGGTGGTGACGCTGCGGCAGAGCCACGGTCAGCAACACCGCGTCATTGG
CAAGCTGATCCAGTGCCTCTTTGGGCCACTTCAGGCAGGATCGAGCTGTCCAGGAGCTAA
GAGAAAGCTGTCCCTGATGCTGGATGAGGGGTGCCCAACACCAGCCAAATTCAGCGCCTG
CCCCCTACCTGGTACCCTCCTGCCGGACCCTTACTTTATCCAGTCGCCCCTCCCAGAGAC
CACCTTGGGCCTCAGCAGCCCTCACAAGGCCAGAGGCCCCATCATCTCTGACATTCCAGA
AGACACTCCATCCCCTGAAGGAACCAGGCTTTCTCCCTCCAGTGGTAGCAGGAGCACCCC
CACCACTGCCTGTGGCTGTGGTGCAGGCCATCCTGGAAGAAAAAGGGAGCTTCAGCCCTG
AGGGGCCCAGGAATGCCCAACAGCCTGAGCCAAGATGCCCCAGGGAGGTTCCTGACAGGG
GACCCCTGGACCTGGAGAGGGAAGGCAGGAGCCCAGAGAGTCTGCTGCCTCCAATGCTGC
TTCGGCCCTCCCCTGAAAATGTGGAGCCTGCGGGGCCGCTGGATGTGCTGGGTCCCAGCC
TCCAAGGGCGAGAATGGACTCTGATGGACTTGGACATGGAGCTGTCCCTGTTGCAGCCTT
TGGTTCCAGAGAAGGGTGAAGCTGAGCTGGCGGTCAAGGGGTTAAATTCTCCAGGCCCAG
GGAAGGACTCTGCGCTTGGAGCGCCTCTTCTGCTGGACGTCCAAGCGACGTTGGGAGGCC
CAGCCCTCGGCTTGCCTGGAGCTGTAACCATTTACAGCACCCCCGAGAGCCGGGCCTCCT
ACCTGGGTCCAGGGGCCAACCCCTCTTCTTGAGACCCCCTCTCTTCTGAAGCCAGCCTGG
CTGAAGGGCTGGCCCGCAGCAGCACGCCCTGCTCGGCTTCCTTGCGCCCCCTGGCGGAGG
CTGAGTGAAGCCCCTTCTACTTGGCAGCCCCTCTCCATTACCGAGCCCTGCATAAAACTG
CATTTTTTTCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCGTGAGCGACCAGAGCCGCTTCGCCAAGGAAGTGCTACCCCAATACTTCAAGCACAGC
AACATGGCCAGCTTTGTGCGGCAACTCAATATGTACGGTTTTCGGAAGGTGGTGAGCATC
GAGCAGGGCGGCCTGCTCAGGCCAGAACGAGACCACGTCGAGTTCCAGCATCCGAGCTTC
GTACGCGGCCGCGAGCAACTACTGGAACGCGTGCGGCGCAAGGTGCCGGCGCTGCGCAGC
GACGACGGCCGCTGGCGCCCTGAGGACCTGGGCCGGCCTTTCCCCCAGGCAGAACGAGAT
CTTATGGAGGGAGGTGGTGACGCTGCGGCAGAGCCACGGTCAGCAACACCGCGTCATTGG
CAAGCTGATCCAGTGCCTCTTTGGGCCACTTCAGGCAGGATCGAGCTGTCCAGGAGCTAA
GAGAAAGCTGTCCCTGATGCTGGATGAGGGGTGCCCAACACCAGCCAAATTCAGCGCCTG
CCCCCTACCTGGTACCCTCCTGCCGGACCCTTACTTTATCCAGTCGCCCCTCCCAGAGAC
CACCTTGGGCCTCAGCAGCCCTCACAAGGCCAGAGGCCCCATCATCTCTGACATTCCAGA
AGACACTCCATCCCCTGAAGGAACCAGGCTTTCTCCCTCCAGTGGTAGCAGGAGCACCCC
CACCACTGCCTGTGGCTGTGGTGCAGGCCATCCTGGAAGAAAAAGGGAGCTTCAGCCCTG
AGGGGCCCAGGAATGCCCAACAGCCTGAGCCAAGATGCCCCAGGGAGGTTCCTGACAGGG
GACCCCTGGACCTGGAGAGGGAAGGCAGGAGCCCAGAGAGTCTGCTGCCTCCAATGCTGC
TTCGGCCCTCCCCTGAAAATGTGGAGCCTGCGGGGCCGCTGGATGTGCTGGGTCCCAGCC
TCCAAGGGCGAGAATGGACTCTGATGGACTTGGACATGGAGCTGTCCCTGTTGCAGCCTT
TGGTTCCAGAGAAGGGTGAAGCTGAGCTGGCGGTCAAGGGGTTAAATTCTCCAGGCCCAG
GGAAGGACTCTGCGCTTGGAGCGCCTCTTCTGCTGGACGTCCAAGCGACGTTGGGAGGCC
CAGCCCTCGGCTTGCCTGGAGCTGTAACCATTTACAGCACCCCCGAGAGCCGGGCCTCCT
ACCTGGGTCCAGGGGCCAACCCCTCTTCTTGAGACCCCCTCTCTTCTGAAGCCAGCCTGG
CTGAAGGGCTGGCCCGCAGCAGCACGCCCTGCTCGGCTTCCTTGCGCCCCCTGGCGGAGG
CTGAGTGAAGCCCCTTCTACTTGGCAGCCCCTCTCCATTACCGAGCCCTGCATAAAACTG
CATTTTTTTCTG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1053-1149, - strand, RNAz p=0.934145
               

               
               1055-1168, - strand, RNAz p=0.99129

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1053-1149, - strand, RNAz p=0.934145
               

               
               1055-1168, - strand, RNAz p=0.99129

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               1056-1158, - strand, RNAmicro p=0.975767

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               1056-1158, - strand, RNAmicro p=0.975767

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               95-224, gnl|bosTau2|chr18 (28351308-28351437)
               

               
               95-224, gnl|Hg17|chr16 (65757123-65757251)
               

               
               95-224, gnl|Mm7|chr8 (103869408-103869537)
               


               
               653-782, gnl|bosTau2|chr18 (28353384-28353513)
               

               
               653-782, gnl|Hg17|chr16 (65759226-65759355)
               

               
               653-782, gnl|Mm7|chr8 (103871447-103871576)
               


               
               1016-1329, gnl|bosTau2|chr18 (28354665-28354978)
               

               
               1016-1329, gnl|canFam2|chr5 (85204374-85204012)
               

               
               1016-1329, gnl|dasNov1|scaffold_32756 (3127-2773)
               

               
               1016-1329, gnl|echTel1|scaffold_310500 (95475-95852)
               

               
               1016-1329, gnl|hg17|chr16 (65760963-65761327)
               

               
               1016-1329, gnl|Hg17|chr16 (65761030-65761346)
               

               
               1016-1329, gnl|loxAfr1|scaffold_9166 (44157-44530)
               

               
               1016-1329, gnl|mm7|chr8 (103874077-103874463)
               

               
               1016-1329, gnl|Mm7|chr8 (103874138-103874479)
               

               
               1016-1329, gnl|monDom2|scaffold_23 (19761976-19761533)
               

               
               1016-1329, gnl|oryCun1|scaffold_200187 (8614-8965)
               

               
               1016-1329, gnl|panTro1|chr18 (60020774-60021138)
               

               
               1016-1329, gnl|rheMac2|chr20 (65469376-65469740)
               

               
               1016-1329, gnl|rn3|chr19 (35095741-35096116)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               95-224, gnl|bosTau2|chr18 (28351308-28351437)
               

               
               95-224, gnl|Hg17|chr16 (65757123-65757251)
               

               
               95-224, gnl|Mm7|chr8 (103869408-103869537)
               


               
               653-782, gnl|bosTau2|chr18 (28353384-28353513)
               

               
               653-782, gnl|Hg17|chr16 (65759226-65759355)
               

               
               653-782, gnl|Mm7|chr8 (103871447-103871576)
               


               
               1016-1329, gnl|bosTau2|chr18 (28354665-28354978)
               

               
               1016-1329, gnl|canFam2|chr5 (85204374-85204012)
               

               
               1016-1329, gnl|dasNov1|scaffold_32756 (3127-2773)
               

               
               1016-1329, gnl|echTel1|scaffold_310500 (95475-95852)
               

               
               1016-1329, gnl|hg17|chr16 (65760963-65761327)
               

               
               1016-1329, gnl|Hg17|chr16 (65761030-65761346)
               

               
               1016-1329, gnl|loxAfr1|scaffold_9166 (44157-44530)
               

               
               1016-1329, gnl|mm7|chr8 (103874077-103874463)
               

               
               1016-1329, gnl|Mm7|chr8 (103874138-103874479)
               

               
               1016-1329, gnl|monDom2|scaffold_23 (19761976-19761533)
               

               
               1016-1329, gnl|oryCun1|scaffold_200187 (8614-8965)
               

               
               1016-1329, gnl|panTro1|chr18 (60020774-60021138)
               

               
               1016-1329, gnl|rheMac2|chr20 (65469376-65469740)
               

               
               1016-1329, gnl|rn3|chr19 (35095741-35096116)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cty (0.41632)
               

               
               mas (0.210305)
               

               
               nje (0.16592)
               

               
               pla (0.133672)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.41632)
               

               
               mas (0.210305)
               

               
               nje (0.16592)
               

               
               pla (0.133672)

	1053-1149, - strand, RNAz p=0.934145
	1055-1168, - strand, RNAz p=0.99129

	95-224, gnl\|bosTau2\|chr18 (28351308-28351437)
	95-224, gnl\|Hg17\|chr16 (65757123-65757251)
	95-224, gnl\|Mm7\|chr8 (103869408-103869537)

	653-782, gnl\|bosTau2\|chr18 (28353384-28353513)
	653-782, gnl\|Hg17\|chr16 (65759226-65759355)
	653-782, gnl\|Mm7\|chr8 (103871447-103871576)

	1016-1329, gnl\|bosTau2\|chr18 (28354665-28354978)
	1016-1329, gnl\|canFam2\|chr5 (85204374-85204012)
	1016-1329, gnl\|dasNov1\|scaffold_32756 (3127-2773)
	1016-1329, gnl\|echTel1\|scaffold_310500 (95475-95852)
	1016-1329, gnl\|hg17\|chr16 (65760963-65761327)
	1016-1329, gnl\|Hg17\|chr16 (65761030-65761346)
	1016-1329, gnl\|loxAfr1\|scaffold_9166 (44157-44530)
	1016-1329, gnl\|mm7\|chr8 (103874077-103874463)
	1016-1329, gnl\|Mm7\|chr8 (103874138-103874479)
	1016-1329, gnl\|monDom2\|scaffold_23 (19761976-19761533)
	1016-1329, gnl\|oryCun1\|scaffold_200187 (8614-8965)
	1016-1329, gnl\|panTro1\|chr18 (60020774-60021138)
	1016-1329, gnl\|rheMac2\|chr20 (65469376-65469740)
	1016-1329, gnl\|rn3\|chr19 (35095741-35096116)