Non-Coding RNA Search

Ss1.1-Tes1-TES01H080055.5

Sequence:


               
               ACGGCGGGTGGCCCGGGCAGCCCGGAGCAGAGTGTGGGTCAGCACTGCTACCAGGATCAG
AGCACCCAAGCCAAGAACAGAGGCAGCCGCTGCACCTGTCTCAATCTCGAAGAGCAGCAG
GGCATAGATGGACAGTGCTGCTAAGTAGACAGAGATCCCACAACAGAAGAGACCAAGGGC
TACGTGTCTGAGGAGGCGGCAGTCATAGAGAAACCAGTCAGACCTGCCAGGGCCCGGTCC
CCGCGCCATCTCAGCGCCCAGGTGGCCGCAGAGCGCGGCGAGCAGCAGGCAGGTGAGACC
TAGAACCAGGGCGAGCGCGGCGAGCGCGGCGGCTAGCGGCAGCAGCGCTCCGGCTGCGTC
CTCTGGCAGCCCCGGGCCGGTCCCCAGCTCTGGGCCCAGGCCGTCGATTCGCGGTCCCCG
AAGCTCCGCGCGGCCCGCCTGCAGCTGGAACAGCAGCTGAGCGCCCAGCGCCGCCAGCAC
CGCCGCGGGGATGCCCAACAGGATCATTGCGGTCAGCACCCGGCCGCCGTACGACCTGGC
CATGGAGGAGTCCTGCGGACCTGAGGGATAGTTGAGGAATCAAAAGAGATTTTAAAGGAC
AGGGGCGATGGGGAGTTAGGGGGCGTCCGAGGGCCCCCGGGAGTACCAAAGGGAGCAGAG
CCGCAGAGGGGCGTCTGAAAGTTGGGAGGCCGCAGAGGGCTCGGGATGCAAGTCGCGGTG
GGGACGAGGAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACGGCGGGTGGCCCGGGCAGCCCGGAGCAGAGTGTGGGTCAGCACTGCTACCAGGATCAG
AGCACCCAAGCCAAGAACAGAGGCAGCCGCTGCACCTGTCTCAATCTCGAAGAGCAGCAG
GGCATAGATGGACAGTGCTGCTAAGTAGACAGAGATCCCACAACAGAAGAGACCAAGGGC
TACGTGTCTGAGGAGGCGGCAGTCATAGAGAAACCAGTCAGACCTGCCAGGGCCCGGTCC
CCGCGCCATCTCAGCGCCCAGGTGGCCGCAGAGCGCGGCGAGCAGCAGGCAGGTGAGACC
TAGAACCAGGGCGAGCGCGGCGAGCGCGGCGGCTAGCGGCAGCAGCGCTCCGGCTGCGTC
CTCTGGCAGCCCCGGGCCGGTCCCCAGCTCTGGGCCCAGGCCGTCGATTCGCGGTCCCCG
AAGCTCCGCGCGGCCCGCCTGCAGCTGGAACAGCAGCTGAGCGCCCAGCGCCGCCAGCAC
CGCCGCGGGGATGCCCAACAGGATCATTGCGGTCAGCACCCGGCCGCCGTACGACCTGGC
CATGGAGGAGTCCTGCGGACCTGAGGGATAGTTGAGGAATCAAAAGAGATTTTAAAGGAC
AGGGGCGATGGGGAGTTAGGGGGCGTCCGAGGGCCCCCGGGAGTACCAAAGGGAGCAGAG
CCGCAGAGGGGCGTCTGAAAGTTGGGAGGCCGCAGAGGGCTCGGGATGCAAGTCGCGGTG
GGGACGAGGAAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8K071_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8K071_MOUSE

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               2-140, gnl|bosTau2|chr7 (4954631-4954493)
               

               
               2-140, gnl|canFam2|chr20 (48363284-48362795)
               

               
               2-140, gnl|dasNov1|scaffold_202376 (4127-4586)
               

               
               2-140, gnl|echTel1|scaffold_253479 (1590-2082)
               

               
               2-140, gnl|galGal2|chrUn (162963024-162962475)
               

               
               2-140, gnl|hg17|chr19 (17408265-17408754)
               

               
               2-140, gnl|Hg17|chr19 (17408601-17408739)
               

               
               2-140, gnl|loxAfr1|scaffold_47343 (4278-4767)
               

               
               2-140, gnl|mm7|chr8 (70022677-70023166)
               

               
               2-140, gnl|Mm7|chr8 (70023015-70023153)
               

               
               2-140, gnl|panTro1|chr20 (18390458-18390947)
               

               
               2-140, gnl|rheMac2|chr19 (16997798-16998284)
               

               
               2-140, gnl|rn3|chr16 (18738023-18738506)
               

               
               2-140, gnl|tetNig1|chr1_random (3353192-3353738)
               


               
               222-732, gnl|bosTau2|chr7 (4949456-4948966)
               

               
               222-732, gnl|Hg17|chr19 (17419950-17420474)
               

               
               222-732, gnl|Mm7|chr8 (70025650-70026073)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-140, gnl|bosTau2|chr7 (4954631-4954493)
               

               
               2-140, gnl|canFam2|chr20 (48363284-48362795)
               

               
               2-140, gnl|dasNov1|scaffold_202376 (4127-4586)
               

               
               2-140, gnl|echTel1|scaffold_253479 (1590-2082)
               

               
               2-140, gnl|galGal2|chrUn (162963024-162962475)
               

               
               2-140, gnl|hg17|chr19 (17408265-17408754)
               

               
               2-140, gnl|Hg17|chr19 (17408601-17408739)
               

               
               2-140, gnl|loxAfr1|scaffold_47343 (4278-4767)
               

               
               2-140, gnl|mm7|chr8 (70022677-70023166)
               

               
               2-140, gnl|Mm7|chr8 (70023015-70023153)
               

               
               2-140, gnl|panTro1|chr20 (18390458-18390947)
               

               
               2-140, gnl|rheMac2|chr19 (16997798-16998284)
               

               
               2-140, gnl|rn3|chr16 (18738023-18738506)
               

               
               2-140, gnl|tetNig1|chr1_random (3353192-3353738)
               


               
               222-732, gnl|bosTau2|chr7 (4949456-4948966)
               

               
               222-732, gnl|Hg17|chr19 (17419950-17420474)
               

               
               222-732, gnl|Mm7|chr8 (70025650-70026073)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cag (0.151194)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.151194)

	2-140, gnl\|bosTau2\|chr7 (4954631-4954493)
	2-140, gnl\|canFam2\|chr20 (48363284-48362795)
	2-140, gnl\|dasNov1\|scaffold_202376 (4127-4586)
	2-140, gnl\|echTel1\|scaffold_253479 (1590-2082)
	2-140, gnl\|galGal2\|chrUn (162963024-162962475)
	2-140, gnl\|hg17\|chr19 (17408265-17408754)
	2-140, gnl\|Hg17\|chr19 (17408601-17408739)
	2-140, gnl\|loxAfr1\|scaffold_47343 (4278-4767)
	2-140, gnl\|mm7\|chr8 (70022677-70023166)
	2-140, gnl\|Mm7\|chr8 (70023015-70023153)
	2-140, gnl\|panTro1\|chr20 (18390458-18390947)
	2-140, gnl\|rheMac2\|chr19 (16997798-16998284)
	2-140, gnl\|rn3\|chr16 (18738023-18738506)
	2-140, gnl\|tetNig1\|chr1_random (3353192-3353738)

	222-732, gnl\|bosTau2\|chr7 (4949456-4948966)
	222-732, gnl\|Hg17\|chr19 (17419950-17420474)
	222-732, gnl\|Mm7\|chr8 (70025650-70026073)