Ss1.1-Tes1-TES01H100013.5
|
ACTTCCGACGTGTGCGTCCGGCGTCCGCCTTCCGCGGGATGGCGGCTCTGCGGAGTTGGC
TGTCGCGGAACGTAGCTTTCTTCTTCAGGTACAGACAATGTGTTCCAGTCGTGGCTAACC
TTAAGAAGCGCTGTTTCTCAGAACTGATAAGACCATGGCACAAAACTGTGGTGGTTGGAC
TTGGGGTAACCCTTTGTGCAGTTCCTATTGCACAGAAATCGGAGCCTCATTCTCTTAGTA
ATGATGCATTAATGAGGAGGGCTGTGTCTTTGGTAACAGATAGCACCTCTACCTTTCTCT
CTCAGACCACATATGCATTGATTGAAGCAATCACTGAATATACTAAGGCTGTTTATACCT
TAATTTCTCTGTACCGACAATATACAAGTTTACTTGGGAAAATGAATTCACAGGAGGAAG
ATGAAGTATGGCAGGTGATCATAGGAGCCAGAGTTGAGATGACTTCAAAACAGCAAGAAT
ACTTGAAGTTGGAAACCACCTGGATGACTGCAGTTAGCCTTTCAGAGATGGCAGCAGAAG
CTGCATACCAAACTGGAGCGGACCAGGCCTCTATAACGGCCAGGAGTCACATCCAGCTGG
TGAAATCACAGGTGCAAGAAGTACGCCAGCTTTCCCAGAAAGCGGAGACCAAGTTGGCAG
AAGCGCAGACGGAAGAACTCCGACAGAAAACACAAGAGGAAGGGCACGAGAGCGCTGAAC
CAGAGCAGGAAGCCTACCTGCGTGAGGATTGAGGGCCTGAGCTGCTGCCCACATCTCCCC
ACTCTGCCCGGGGAAAGCAAGGGCAGATGCCATCCAGCACAGAGTTGGCACAGCTTTCTC
TGCAGAGGCAGGTTTTGCCCTGGCCCATCAGACCTGAGTCATTGTGAGCTGTGAGTGCCT
GACCCCTGTCCCCATGGTCTCAGGCTTGTACCAGACCTGGTTCTTAGCCCATGGGCACTG
CACCCTATTGAACATTTCACCCACTCAGCACAGCTGCCCTCTCACCCTTCAATCTTTACC
TCCCACCAGAACATCTCACCAAGCTGGCCAGAGAGAGGGCACCTTCTCTGTTAAGTCCAC
AAGTTCAATAGTTGTTTAACCTCAGTTTCCCATCTTATTCACATTTTCAAATATGATTTA
GTATTTGTTCCCTCCATAGGGATGTGAGTTTTTTGGGGGAGATGGAGCCTGTCCTGTAAG
ATTTCTTATTGTTCTGTTTCTAATGCCTTGGCACCACTGCCCTGTGAGGACAGCTCAGGC
CAACGAGCCAAAAGTCCTCTGTTCTTAGGGGACTGAATGTGGAGTGTTTACCTGGTGCTC
TCAACAGGACTTAATTCCAACACA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
ACTTCCGACGTGTGCGTCCGGCGTCCGCCTTCCGCGGGATGGCGGCTCTGCGGAGTTGGC
TGTCGCGGAACGTAGCTTTCTTCTTCAGGTACAGACAATGTGTTCCAGTCGTGGCTAACC
TTAAGAAGCGCTGTTTCTCAGAACTGATAAGACCATGGCACAAAACTGTGGTGGTTGGAC
TTGGGGTAACCCTTTGTGCAGTTCCTATTGCACAGAAATCGGAGCCTCATTCTCTTAGTA
ATGATGCATTAATGAGGAGGGCTGTGTCTTTGGTAACAGATAGCACCTCTACCTTTCTCT
CTCAGACCACATATGCATTGATTGAAGCAATCACTGAATATACTAAGGCTGTTTATACCT
TAATTTCTCTGTACCGACAATATACAAGTTTACTTGGGAAAATGAATTCACAGGAGGAAG
ATGAAGTATGGCAGGTGATCATAGGAGCCAGAGTTGAGATGACTTCAAAACAGCAAGAAT
ACTTGAAGTTGGAAACCACCTGGATGACTGCAGTTAGCCTTTCAGAGATGGCAGCAGAAG
CTGCATACCAAACTGGAGCGGACCAGGCCTCTATAACGGCCAGGAGTCACATCCAGCTGG
TGAAATCACAGGTGCAAGAAGTACGCCAGCTTTCCCAGAAAGCGGAGACCAAGTTGGCAG
AAGCGCAGACGGAAGAACTCCGACAGAAAACACAAGAGGAAGGGCACGAGAGCGCTGAAC
CAGAGCAGGAAGCCTACCTGCGTGAGGATTGAGGGCCTGAGCTGCTGCCCACATCTCCCC
ACTCTGCCCGGGGAAAGCAAGGGCAGATGCCATCCAGCACAGAGTTGGCACAGCTTTCTC
TGCAGAGGCAGGTTTTGCCCTGGCCCATCAGACCTGAGTCATTGTGAGCTGTGAGTGCCT
GACCCCTGTCCCCATGGTCTCAGGCTTGTACCAGACCTGGTTCTTAGCCCATGGGCACTG
CACCCTATTGAACATTTCACCCACTCAGCACAGCTGCCCTCTCACCCTTCAATCTTTACC
TCCCACCAGAACATCTCACCAAGCTGGCCAGAGAGAGGGCACCTTCTCTGTTAAGTCCAC
AAGTTCAATAGTTGTTTAACCTCAGTTTCCCATCTTATTCACATTTTCAAATATGATTTA
GTATTTGTTCCCTCCATAGGGATGTGAGTTTTTTGGGGGAGATGGAGCCTGTCCTGTAAG
ATTTCTTATTGTTCTGTTTCTAATGCCTTGGCACCACTGCCCTGTGAGGACAGCTCAGGC
CAACGAGCCAAAAGTCCTCTGTTCTTAGGGGACTGAATGTGGAGTGTTTACCTGGTGCTC
TCAACAGGACTTAATTCCAACACA
|
|
gi|56542121|emb|CAI30420.1| |
Protein identifier
|
gi|56542121|emb|CAI30420.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
213-348, gnl|bosTau2|chr17 (29074047-29074182) |
|
213-348, gnl|canFam2|chr26 (10147264-10147155) |
|
213-348, gnl|dasNov1|scaffold_101220 (5777-5879) |
|
213-348, gnl|echTel1|scaffold_35853 (8640-8544) |
|
213-348, gnl|galGal2|chr15 (5753077-5753175) |
|
213-348, gnl|hg17|chr12 (121227680-121227789) |
|
213-348, gnl|Hg17|chr12 (121227827-121227692) |
|
213-348, gnl|mm7|chr5 (122765872-122765981) |
|
213-348, gnl|Mm7|chr5 (122763695-122763560) |
|
213-348, gnl|monDom2|scaffold_97 (2516774-2516883) |
|
213-348, gnl|oryCun1|scaffold_141752 (4376-4481) |
|
213-348, gnl|panTro1|chr10 (124289739-124289848) |
|
213-348, gnl|rheMac2|chr11 (123467384-123467493) |
|
213-348, gnl|rn3|chr12 (34064682-34064573) |
|
213-348, gnl|tetNig1|chrUn_random (131748804-131748706) |
| |
|
555-1344, gnl|bosTau2|chr17 (29085590-29086378) |
|
555-1344, gnl|Hg17|chr12 (121218005-121217197) |
|
555-1344, gnl|Mm7|chr5 (122756228-122755516) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
213-348, gnl|bosTau2|chr17 (29074047-29074182) |
|
213-348, gnl|canFam2|chr26 (10147264-10147155) |
|
213-348, gnl|dasNov1|scaffold_101220 (5777-5879) |
|
213-348, gnl|echTel1|scaffold_35853 (8640-8544) |
|
213-348, gnl|galGal2|chr15 (5753077-5753175) |
|
213-348, gnl|hg17|chr12 (121227680-121227789) |
|
213-348, gnl|Hg17|chr12 (121227827-121227692) |
|
213-348, gnl|mm7|chr5 (122765872-122765981) |
|
213-348, gnl|Mm7|chr5 (122763695-122763560) |
|
213-348, gnl|monDom2|scaffold_97 (2516774-2516883) |
|
213-348, gnl|oryCun1|scaffold_141752 (4376-4481) |
|
213-348, gnl|panTro1|chr10 (124289739-124289848) |
|
213-348, gnl|rheMac2|chr11 (123467384-123467493) |
|
213-348, gnl|rn3|chr12 (34064682-34064573) |
|
213-348, gnl|tetNig1|chrUn_random (131748804-131748706) |
| |
|
555-1344, gnl|bosTau2|chr17 (29085590-29086378) |
|
555-1344, gnl|Hg17|chr12 (121218005-121217197) |
|
555-1344, gnl|Mm7|chr5 (122756228-122755516) |
|
cty (0.31224) |
|
pla (0.267344) |
|
eru (0.240096) |
|
mas (0.210305) |
|
tes (0.207814) |
|
fty (0.17584) |
|
sin (0.174948) |
|
eye (0.170503) |
|
nco (0.161734) |
|
csp (0.161186) |
|
hyp (0.142837) |
|
lnt (0.142308) |
|
nbm (0.0993246) |
|
jej (0.0989218) |
|
eje (0.0988338) |
|
cty (0.31224) |
|
pla (0.267344) |
|
eru (0.240096) |
|
mas (0.210305) |
|
tes (0.207814) |
|
fty (0.17584) |
|
sin (0.174948) |
|
eye (0.170503) |
|
nco (0.161734) |
|
csp (0.161186) |
|
hyp (0.142837) |
|
lnt (0.142308) |
|
nbm (0.0993246) |
|
jej (0.0989218) |
|
eje (0.0988338) |
