Ss1.1-Tes1-TES01H100047.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGCGAAGCTGGACCGCGGTCGACGCCATGCGTGCTCTGCTGCAGCTGCTGCGCACAAGTG GGATCCGGCGCGCCGGCGCCCCTGCTGTCGCAGCCGCGCGCCTGCCGCTGGGAGCTAGCG CAGGGCCCGGGCCGCGCCGCGCCATGGCTCTGTACCGCACGGAAGAGCGCGGCCAGCCCC ATTCGCCCGATTACCGTCTCTTTTTCAAGAATGTAGCTGGTCACTACATTTCCCCGTTTC ATGATATTCCTTTGAAGGTGGACTCTCAAGAGGAAAATGGCATTCCTACAAAGAGAGCAC GAAATGATGAATATGAGAATTTGTTTAATATGATTGTAGAAGTACCTCGGTGGACAAATG CTAAAATGGAGATTGCCACGGAGGAGCCATTGAATCCCATTAAACAAGACGTAAAGAATG GCAAGCTTCGCTATGTGGCAAATATCTTTCCTCACAAGGGTTACATATGGAATTATGGTG CCCTCCCTCAGACTTGGGAAGATCCCCATCGAAAAGACGAGAGCACAGACTGCTGTGGAG ATAATGATCCTATTGATGTTTGTGAAATAGGCTCAAAGGTTCTTTCTCGGGGAGAGGTTG TTCATGTGAAGATCCTTGGAATTTTGGCTCTTATTGATCAGGGTGAAACAGATTGGAAAT TAATTGCTATCAATATGAATGATCCTGAAGCCTCAAAGTTTCATGATATCGATGATGTTA GGAAGTACAAACCTGGTTACTTGGAAGCAACGCTTAATTGGTTTAGATTTTACAAGATAC CGGAGGGAAAACCGGAAAACCAGTTTGCTTTTAATGGAGAATTCAAAAACAAGGCTTTTG CTCTTGAAGTTATTAAATCTACTCATGAATGTTGGAAATCATTGCTTATGAAGAAGTGTG ATGGAGGCCCTATTAATTGCACAAATGTACAGGTATGCGATAGCCCTTTCCACTGCTCTC AAGAGGAAGCAAGATCATTAGTTGAATCGGTGTCATTGTCACTGGATAAAGGAAGTAAGG AAGAAGATCAAGTATGGCACTTCCTTGGCAAGTGATTGGAACGTTGAAGTTCTGCCATCA GGATTCCCATCCCTAAGAACGGCATGACTCCATCTCCCCTGAGTGCTAGAAACAGGCAGA TCTATGAGAACTAGCTAGTTTCCTGTTGAAACTTCTTTTTTTTTTTCCCCAAATTTTTAA GGTTTGCAATGTGTAAATAAATATTGAATTTTTTGAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGCGAAGCTGGACCGCGGTCGACGCCATGCGTGCTCTGCTGCAGCTGCTGCGCACAAGTG GGATCCGGCGCGCCGGCGCCCCTGCTGTCGCAGCCGCGCGCCTGCCGCTGGGAGCTAGCG CAGGGCCCGGGCCGCGCCGCGCCATGGCTCTGTACCGCACGGAAGAGCGCGGCCAGCCCC ATTCGCCCGATTACCGTCTCTTTTTCAAGAATGTAGCTGGTCACTACATTTCCCCGTTTC ATGATATTCCTTTGAAGGTGGACTCTCAAGAGGAAAATGGCATTCCTACAAAGAGAGCAC GAAATGATGAATATGAGAATTTGTTTAATATGATTGTAGAAGTACCTCGGTGGACAAATG CTAAAATGGAGATTGCCACGGAGGAGCCATTGAATCCCATTAAACAAGACGTAAAGAATG GCAAGCTTCGCTATGTGGCAAATATCTTTCCTCACAAGGGTTACATATGGAATTATGGTG CCCTCCCTCAGACTTGGGAAGATCCCCATCGAAAAGACGAGAGCACAGACTGCTGTGGAG ATAATGATCCTATTGATGTTTGTGAAATAGGCTCAAAGGTTCTTTCTCGGGGAGAGGTTG TTCATGTGAAGATCCTTGGAATTTTGGCTCTTATTGATCAGGGTGAAACAGATTGGAAAT TAATTGCTATCAATATGAATGATCCTGAAGCCTCAAAGTTTCATGATATCGATGATGTTA GGAAGTACAAACCTGGTTACTTGGAAGCAACGCTTAATTGGTTTAGATTTTACAAGATAC CGGAGGGAAAACCGGAAAACCAGTTTGCTTTTAATGGAGAATTCAAAAACAAGGCTTTTG CTCTTGAAGTTATTAAATCTACTCATGAATGTTGGAAATCATTGCTTATGAAGAAGTGTG ATGGAGGCCCTATTAATTGCACAAATGTACAGGTATGCGATAGCCCTTTCCACTGCTCTC AAGAGGAAGCAAGATCATTAGTTGAATCGGTGTCATTGTCACTGGATAAAGGAAGTAAGG AAGAAGATCAAGTATGGCACTTCCTTGGCAAGTGATTGGAACGTTGAAGTTCTGCCATCA GGATTCCCATCCCTAAGAACGGCATGACTCCATCTCCCCTGAGTGCTAGAAACAGGCAGA TCTATGAGAACTAGCTAGTTTCCTGTTGAAACTTCTTTTTTTTTTTCCCCAAATTTTTAA GGTTTGCAATGTGTAAATAAATATTGAATTTTTTGAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1064-1183, - strand, RNAz p=0.671465 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1064-1183, - strand, RNAz p=0.671465 |
| Aligned organism(s): 64 entry(ies) | More info |
| Aligned organism(s): 64 entry(ies) | Help | Less info |
| 1-218, gnl|bosTau2|chr6 (6364490-6364274) | |
| 1-218, gnl|canFam2|chr32 (29237289-29237624) | |
| 1-218, gnl|dasNov1|scaffold_57327 (5048-5395) | |
| 1-218, gnl|echTel1|scaffold_295991 (1048-712) | |
| 1-218, gnl|hg17|chr4 (106752605-106752937) | |
| 1-218, gnl|Hg17|chr4 (106752837-106752645) | |
| 1-218, gnl|loxAfr1|scaffold_12517 (49565-49210) | |
| 1-218, gnl|mm7|chr3 (133107247-133106948) | |
| 1-218, gnl|oryCun1|scaffold_204727 (14938-14618) | |
| 1-218, gnl|panTro1|chr3 (123190219-123190551) | |
| 1-218, gnl|rheMac2|chr5 (98532809-98533141) | |
| 1-218, gnl|rn3|chr2 (230808111-230807802) | |
| 370-491, gnl|bosTau2|chr28 (19368437-19368558) | |
| 370-491, gnl|canFam2|chr21 (45895276-45895396) | |
| 370-491, gnl|canFam2|chr21 (45895393-45895279) | |
| 370-491, gnl|canFam2|chr4 (24373210-24373329) | |
| 370-491, gnl|danRer3|chr13 (31447187-31447307) | |
| 370-491, gnl|danRer3|chr13 (31447187-31447306) | |
| 370-491, gnl|danRer3|chr13 (31447305-31447190) | |
| 370-491, gnl|dasNov1|scaffold_144402 (1455-1576) | |
| 370-491, gnl|dasNov1|scaffold_144402 (1455-1575) | |
| 370-491, gnl|dasNov1|scaffold_144402 (1574-1458) | |
| 370-491, gnl|echTel1|scaffold_101623 (778-659) | |
| 370-491, gnl|echTel1|scaffold_319784 (88153-88033) | |
| 370-491, gnl|echTel1|scaffold_319784 (88035-88150) | |
| 370-491, gnl|fr1|chrUn (59269096-59269216) | |
| 370-491, gnl|fr1|chrUn (59269096-59269215) | |
| 370-491, gnl|fr1|chrUn (20275462-20275347) | |
| 370-491, gnl|hg17|chr10 (71647575-71647694) | |
| 370-491, gnl|Hg17|chr10 (71647695-71647574) | |
| 370-491, gnl|hg17|chr3 (17888799-17888919) | |
| 370-491, gnl|hg17|chr5 (172335299-172335414) | |
| 370-491, gnl|loxAfr1|scaffold_435 (145825-145945) | |
| 370-491, gnl|loxAfr1|scaffold_435 (145943-145828) | |
| 370-491, gnl|loxAfr1|scaffold_7106 (47171-47290) | |
| 370-491, gnl|mm7|chr10 (61179490-61179371) | |
| 370-491, gnl|Mm7|chr10 (61179368-61179489) | |
| 370-491, gnl|mm7|chr2 (51239595-51239473) | |
| 370-491, gnl|mm7|chr2 (51239475-51239592) | |
| 370-491, gnl|monDom2|scaffold_189 (919836-919956) | |
| 370-491, gnl|monDom2|scaffold_189 (919954-919839) | |
| 370-491, gnl|monDom2|scaffold_41 (20409214-20409095) | |
| 370-491, gnl|oryCun1|scaffold_143749 (2347-2229) | |
| 370-491, gnl|oryCun1|scaffold_143749 (2231-2344) | |
| 370-491, gnl|oryCun1|scaffold_175585 (1152-1271) | |
| 370-491, gnl|panTro1|chr2 (18580983-18581103) | |
| 370-491, gnl|panTro1|chr4 (179659893-179660008) | |
| 370-491, gnl|panTro1|chr8 (72817328-72817447) | |
| 370-491, gnl|rheMac2|chr2 (160152620-160152740) | |
| 370-491, gnl|rheMac2|chr2 (160152738-160152623) | |
| 370-491, gnl|rheMac2|chr9 (66794005-66793886) | |
| 370-491, gnl|rn3|chr20 (29040894-29040777) | |
| 370-491, gnl|rn3|chr20 (29040897-29040778) | |
| 370-491, gnl|rn3|chr20 (29040779-29040894) | |
| 370-491, gnl|tetNig1|chr17 (5986909-5987028) | |
| 370-491, gnl|tetNig1|chr17 (5986909-5987027) | |
| 370-491, gnl|tetNig1|chr17 (5987026-5986912) | |
| 370-491, gnl|xenTro1|scaffold_171 (147444-147327) | |
| 370-491, gnl|xenTro1|scaffold_171 (147447-147328) | |
| 699-834, gnl|bosTau2|chr28 (19380068-19380204) | |
| 699-834, gnl|Hg17|chr10 (71639455-71639319) | |
| 699-834, gnl|Mm7|chr10 (61185361-61185497) | |
| 1025-1237, gnl|bosTau2|chr6 (6240694-6240487) | |
| 1025-1237, gnl|Hg17|chr4 (106648516-106648326) |
| Aligned organism(s): 64 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-218, gnl|bosTau2|chr6 (6364490-6364274) | |
| 1-218, gnl|canFam2|chr32 (29237289-29237624) | |
| 1-218, gnl|dasNov1|scaffold_57327 (5048-5395) | |
| 1-218, gnl|echTel1|scaffold_295991 (1048-712) | |
| 1-218, gnl|hg17|chr4 (106752605-106752937) | |
| 1-218, gnl|Hg17|chr4 (106752837-106752645) | |
| 1-218, gnl|loxAfr1|scaffold_12517 (49565-49210) | |
| 1-218, gnl|mm7|chr3 (133107247-133106948) | |
| 1-218, gnl|oryCun1|scaffold_204727 (14938-14618) | |
| 1-218, gnl|panTro1|chr3 (123190219-123190551) | |
| 1-218, gnl|rheMac2|chr5 (98532809-98533141) | |
| 1-218, gnl|rn3|chr2 (230808111-230807802) | |
| 370-491, gnl|bosTau2|chr28 (19368437-19368558) | |
| 370-491, gnl|canFam2|chr21 (45895276-45895396) | |
| 370-491, gnl|canFam2|chr21 (45895393-45895279) | |
| 370-491, gnl|canFam2|chr4 (24373210-24373329) | |
| 370-491, gnl|danRer3|chr13 (31447187-31447307) | |
| 370-491, gnl|danRer3|chr13 (31447187-31447306) | |
| 370-491, gnl|danRer3|chr13 (31447305-31447190) | |
| 370-491, gnl|dasNov1|scaffold_144402 (1455-1576) | |
| 370-491, gnl|dasNov1|scaffold_144402 (1455-1575) | |
| 370-491, gnl|dasNov1|scaffold_144402 (1574-1458) | |
| 370-491, gnl|echTel1|scaffold_101623 (778-659) | |
| 370-491, gnl|echTel1|scaffold_319784 (88153-88033) | |
| 370-491, gnl|echTel1|scaffold_319784 (88035-88150) | |
| 370-491, gnl|fr1|chrUn (59269096-59269216) | |
| 370-491, gnl|fr1|chrUn (59269096-59269215) | |
| 370-491, gnl|fr1|chrUn (20275462-20275347) | |
| 370-491, gnl|hg17|chr10 (71647575-71647694) | |
| 370-491, gnl|Hg17|chr10 (71647695-71647574) | |
| 370-491, gnl|hg17|chr3 (17888799-17888919) | |
| 370-491, gnl|hg17|chr5 (172335299-172335414) | |
| 370-491, gnl|loxAfr1|scaffold_435 (145825-145945) | |
| 370-491, gnl|loxAfr1|scaffold_435 (145943-145828) | |
| 370-491, gnl|loxAfr1|scaffold_7106 (47171-47290) | |
| 370-491, gnl|mm7|chr10 (61179490-61179371) | |
| 370-491, gnl|Mm7|chr10 (61179368-61179489) | |
| 370-491, gnl|mm7|chr2 (51239595-51239473) | |
| 370-491, gnl|mm7|chr2 (51239475-51239592) | |
| 370-491, gnl|monDom2|scaffold_189 (919836-919956) | |
| 370-491, gnl|monDom2|scaffold_189 (919954-919839) | |
| 370-491, gnl|monDom2|scaffold_41 (20409214-20409095) | |
| 370-491, gnl|oryCun1|scaffold_143749 (2347-2229) | |
| 370-491, gnl|oryCun1|scaffold_143749 (2231-2344) | |
| 370-491, gnl|oryCun1|scaffold_175585 (1152-1271) | |
| 370-491, gnl|panTro1|chr2 (18580983-18581103) | |
| 370-491, gnl|panTro1|chr4 (179659893-179660008) | |
| 370-491, gnl|panTro1|chr8 (72817328-72817447) | |
| 370-491, gnl|rheMac2|chr2 (160152620-160152740) | |
| 370-491, gnl|rheMac2|chr2 (160152738-160152623) | |
| 370-491, gnl|rheMac2|chr9 (66794005-66793886) | |
| 370-491, gnl|rn3|chr20 (29040894-29040777) | |
| 370-491, gnl|rn3|chr20 (29040897-29040778) | |
| 370-491, gnl|rn3|chr20 (29040779-29040894) | |
| 370-491, gnl|tetNig1|chr17 (5986909-5987028) | |
| 370-491, gnl|tetNig1|chr17 (5986909-5987027) | |
| 370-491, gnl|tetNig1|chr17 (5987026-5986912) | |
| 370-491, gnl|xenTro1|scaffold_171 (147444-147327) | |
| 370-491, gnl|xenTro1|scaffold_171 (147447-147328) | |
| 699-834, gnl|bosTau2|chr28 (19380068-19380204) | |
| 699-834, gnl|Hg17|chr10 (71639455-71639319) | |
| 699-834, gnl|Mm7|chr10 (61185361-61185497) | |
| 1025-1237, gnl|bosTau2|chr6 (6240694-6240487) | |
| 1025-1237, gnl|Hg17|chr4 (106648516-106648326) |
| Expressed library(ies): 29 entry(ies) | More info |
| Expressed library(ies): 29 entry(ies) | Help | Less info |
| mga (0.64082) | |
| lin (0.582411) | |
| cbe (0.478469) | |
| sug (0.381874) | |
| fce (0.271592) | |
| thg (0.253582) | |
| pan (0.23596) | |
| hea (0.204499) | |
| nbm (0.198649) | |
| fcc (0.197785) | |
| aor (0.195274) | |
| col (0.195008) | |
| gul (0.177588) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| rec (0.17307) | |
| csp (0.161186) | |
| lun (0.150489) | |
| bfe (0.149858) | |
| ski (0.146735) | |
| liv (0.146284) | |
| pty (0.142714) | |
| ssp (0.13552) | |
| ret (0.128733) | |
| tra (0.123092) | |
| clu (0.119646) | |
| jca (0.11396) | |
| spc (0.113366) |
| Expressed library(ies): 29 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mga (0.64082) | |
| lin (0.582411) | |
| cbe (0.478469) | |
| sug (0.381874) | |
| fce (0.271592) | |
| thg (0.253582) | |
| pan (0.23596) | |
| hea (0.204499) | |
| nbm (0.198649) | |
| fcc (0.197785) | |
| aor (0.195274) | |
| col (0.195008) | |
| gul (0.177588) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| rec (0.17307) | |
| csp (0.161186) | |
| lun (0.150489) | |
| bfe (0.149858) | |
| ski (0.146735) | |
| liv (0.146284) | |
| pty (0.142714) | |
| ssp (0.13552) | |
| ret (0.128733) | |
| tra (0.123092) | |
| clu (0.119646) | |
| jca (0.11396) | |
| spc (0.113366) |