Non-Coding RNA Search

Ss1.1-Tes1-TES01H110010.5

Sequence:


               
               TGGGGAGTCTGCTGGGCAAGGAGAACGACGCGGCGCTCATCATCGACGGCCACACCCTGA
AGTACGCGCTGTCCTTCGAGGTCCGGAGGAGCTTCCTGGACTTGGCCCTCTCGTGCAAGG
CGGTCATATGCTGCAGGGTGTCTCCTCTGCAGAAGTCGGAGATAGTGGATGTGGTGAAGA
AGCGGGTGAAGGCCATCACCCTGGCCATCGGGGACGGGGCCAACGACGTGGGCATGATCC
AGACGGCCCACGTGGGCGTGGGGATCAGCGGGAATGAGGGCATGCAAGCCACCAACAACT
CGGACTACGCCATCGCCCAGTTTTCCTTCTTGGAGAAGCTGCTGCTGGTCCACGGCGCCT
GGAGCTACAACCGAGTGACCAAGTGCATCCTGTACTGCTTCTACAAGAACGTGGTTCTCT
ACATCATCGAGCTCTGGTTCGCCTTTGTTAATGGATTTTCGGGGCAGATTTTATTTGAAC
GTTGGTGCATCGGCTTGTACAACGTGATCTTCACGGCGCTGCCCCCCTTCACGCTGGGCA
TCTTCGAGAGGTCGTGCAGTCAGGAGAGCATGCTGAGGTTCCCTCAGCTCTACAAGATCA
CCCAGAACGCCGAGGGCTTCAACACCAAGGTTTTCTGGGGTCACTGCATCAACGCCTTGG
TCCACTCCCTTATCCTCTTCTGGTTCCCGATGAAGGCGATGGAGCACGACACTGTGTTGG
CCAATGGTCACGCCACAGACTATCTATTTGTTGGAAATATTGTCTACACGTACGTTGTTG
TTACCGTTTGTCTGAAAGCCGGTTTGGAGACTACAGCATGGACAAAATTCAGTCACCTGG
CCGTCTGGGGAAGCGTGCTGATCTGGCTGGTGTTTTTTGGCGTCTACTCGACCATCTGGC
CCACCGTCCCCATTGCTCCAGACATGAAGGGCCAGGCGGCTATGGTCCTGAGCTCTGCAC
ACTTCTGGCTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGGGAGTCTGCTGGGCAAGGAGAACGACGCGGCGCTCATCATCGACGGCCACACCCTGA
AGTACGCGCTGTCCTTCGAGGTCCGGAGGAGCTTCCTGGACTTGGCCCTCTCGTGCAAGG
CGGTCATATGCTGCAGGGTGTCTCCTCTGCAGAAGTCGGAGATAGTGGATGTGGTGAAGA
AGCGGGTGAAGGCCATCACCCTGGCCATCGGGGACGGGGCCAACGACGTGGGCATGATCC
AGACGGCCCACGTGGGCGTGGGGATCAGCGGGAATGAGGGCATGCAAGCCACCAACAACT
CGGACTACGCCATCGCCCAGTTTTCCTTCTTGGAGAAGCTGCTGCTGGTCCACGGCGCCT
GGAGCTACAACCGAGTGACCAAGTGCATCCTGTACTGCTTCTACAAGAACGTGGTTCTCT
ACATCATCGAGCTCTGGTTCGCCTTTGTTAATGGATTTTCGGGGCAGATTTTATTTGAAC
GTTGGTGCATCGGCTTGTACAACGTGATCTTCACGGCGCTGCCCCCCTTCACGCTGGGCA
TCTTCGAGAGGTCGTGCAGTCAGGAGAGCATGCTGAGGTTCCCTCAGCTCTACAAGATCA
CCCAGAACGCCGAGGGCTTCAACACCAAGGTTTTCTGGGGTCACTGCATCAACGCCTTGG
TCCACTCCCTTATCCTCTTCTGGTTCCCGATGAAGGCGATGGAGCACGACACTGTGTTGG
CCAATGGTCACGCCACAGACTATCTATTTGTTGGAAATATTGTCTACACGTACGTTGTTG
TTACCGTTTGTCTGAAAGCCGGTTTGGAGACTACAGCATGGACAAAATTCAGTCACCTGG
CCGTCTGGGGAAGCGTGCTGATCTGGCTGGTGTTTTTTGGCGTCTACTCGACCATCTGGC
CCACCGTCCCCATTGCTCCAGACATGAAGGGCCAGGCGGCTATGGTCCTGAGCTCTGCAC
ACTTCTGGCTGG

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

Help | Less info


               
               3-137, gnl|bosTau2|chr12 (17785675-17785541)
               

               
               3-137, gnl|canFam2|chr25 (16772054-16771819)
               

               
               3-137, gnl|danRer3|chr24 (18581504-18581305)
               

               
               3-137, gnl|dasNov1|scaffold_8699 (41098-41329)
               

               
               3-137, gnl|echTel1|scaffold_47865 (3117-2871)
               

               
               3-137, gnl|fr1|chrUn (57975568-57975783)
               

               
               3-137, gnl|galGal2|chr1 (168851630-168851846)
               

               
               3-137, gnl|hg17|chr13 (25171266-25171497)
               

               
               3-137, gnl|Hg17|chr13 (25171350-25171484)
               

               
               3-137, gnl|loxAfr1|scaffold_10866 (46555-46786)
               

               
               3-137, gnl|mm7|chr14 (54794038-54793817)
               

               
               3-137, gnl|Mm7|chr14 (54793962-54793828)
               

               
               3-137, gnl|monDom2|scaffold_15 (34148466-34148230)
               

               
               3-137, gnl|oryCun1|scaffold_79501 (496-278)
               

               
               3-137, gnl|panTro1|chr14 (24345277-24345508)
               

               
               3-137, gnl|rheMac2|chr17 (5609513-5609744)
               

               
               3-137, gnl|rn3|chr15 (39043380-39043156)
               

               
               3-137, gnl|tetNig1|chr1 (5236070-5235858)
               

               
               3-137, gnl|xenTro1|scaffold_767 (207647-207872)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-137, gnl|bosTau2|chr12 (17785675-17785541)
               

               
               3-137, gnl|canFam2|chr25 (16772054-16771819)
               

               
               3-137, gnl|danRer3|chr24 (18581504-18581305)
               

               
               3-137, gnl|dasNov1|scaffold_8699 (41098-41329)
               

               
               3-137, gnl|echTel1|scaffold_47865 (3117-2871)
               

               
               3-137, gnl|fr1|chrUn (57975568-57975783)
               

               
               3-137, gnl|galGal2|chr1 (168851630-168851846)
               

               
               3-137, gnl|hg17|chr13 (25171266-25171497)
               

               
               3-137, gnl|Hg17|chr13 (25171350-25171484)
               

               
               3-137, gnl|loxAfr1|scaffold_10866 (46555-46786)
               

               
               3-137, gnl|mm7|chr14 (54794038-54793817)
               

               
               3-137, gnl|Mm7|chr14 (54793962-54793828)
               

               
               3-137, gnl|monDom2|scaffold_15 (34148466-34148230)
               

               
               3-137, gnl|oryCun1|scaffold_79501 (496-278)
               

               
               3-137, gnl|panTro1|chr14 (24345277-24345508)
               

               
               3-137, gnl|rheMac2|chr17 (5609513-5609744)
               

               
               3-137, gnl|rn3|chr15 (39043380-39043156)
               

               
               3-137, gnl|tetNig1|chr1 (5236070-5235858)
               

               
               3-137, gnl|xenTro1|scaffold_767 (207647-207872)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               fcc (0.197785)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               cty (0.10408)

	3-137, gnl\|bosTau2\|chr12 (17785675-17785541)
	3-137, gnl\|canFam2\|chr25 (16772054-16771819)
	3-137, gnl\|danRer3\|chr24 (18581504-18581305)
	3-137, gnl\|dasNov1\|scaffold_8699 (41098-41329)
	3-137, gnl\|echTel1\|scaffold_47865 (3117-2871)
	3-137, gnl\|fr1\|chrUn (57975568-57975783)
	3-137, gnl\|galGal2\|chr1 (168851630-168851846)
	3-137, gnl\|hg17\|chr13 (25171266-25171497)
	3-137, gnl\|Hg17\|chr13 (25171350-25171484)
	3-137, gnl\|loxAfr1\|scaffold_10866 (46555-46786)
	3-137, gnl\|mm7\|chr14 (54794038-54793817)
	3-137, gnl\|Mm7\|chr14 (54793962-54793828)
	3-137, gnl\|monDom2\|scaffold_15 (34148466-34148230)
	3-137, gnl\|oryCun1\|scaffold_79501 (496-278)
	3-137, gnl\|panTro1\|chr14 (24345277-24345508)
	3-137, gnl\|rheMac2\|chr17 (5609513-5609744)
	3-137, gnl\|rn3\|chr15 (39043380-39043156)
	3-137, gnl\|tetNig1\|chr1 (5236070-5235858)
	3-137, gnl\|xenTro1\|scaffold_767 (207647-207872)