Ss1.1-Tes1-TES01H110016.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGTCTCCTCAGGGGGGCCAGATTGCGATCGCGATGAGGCTTCGGAACCAGCTCCAGTCAG TGTACAAGATGGACCCGCTACGGAACGAGGAGGAGGTTCGAGTAAAGATCAAAGACTTGA ATGAACACATCGTCTGCTGCTTGTGCGCAGGATACTTCGTGGATGCCACTACCATCACTG AGTGTCTTCATACGTTCTGCAAGAGTTGTATTGTGAAGTACCTCCAAACCAGCAAGTACT GCCCCATGTGCAACATCAAGATCCATGAGACACAGCCACTGCTCAACCTCAAACTGGACC GGGTCATGCAGGACATCGTGTACAAGCTAGTGCCAGGCTTGCAAGACAGTGAAGAGAAAC GGATCCGAGAATTCTACCAGTCCCGAGGCTTGGACAGGATCACTCAGCCCAGTGGGGAAG AGCCAGCCCTGAGCAACCTCGGCCTCCCCTTCAGCAGTTTCGACCACTCAAAAGCCCACT ACTATCGCTATGATGAGCAGCTAAGCCTATGCCTGGAGCGGCTGAGTTCTGGCAAAGACA AGAATAAAAGCGTCCTGCAGAACAAATATGTGCGATGTTCTGTTAGAGCTGAGGTTCGCC ATCTCCGGAAAGTCCTCTGTCACCGCTTGATGCTAAGTCCCCAGCATGTGCAGCTCCTTT TTGACAATGAAGTTCTCCCTGATCACATGACCATGAAGCAGATATGGCTCTCCCGCTGGT TCGGCAAGCCATCTCCTTTGCTTTTACAATACAGTGTGAAAGAGAAGAGGAGGTAGGGGC CAAGCCCCTACCCCATCCCTCTCCCCTTCCCTCCCCAGATATTTATGTGAAATTAACCTC GGCTTTATTTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGTCTCCTCAGGGGGGCCAGATTGCGATCGCGATGAGGCTTCGGAACCAGCTCCAGTCAG TGTACAAGATGGACCCGCTACGGAACGAGGAGGAGGTTCGAGTAAAGATCAAAGACTTGA ATGAACACATCGTCTGCTGCTTGTGCGCAGGATACTTCGTGGATGCCACTACCATCACTG AGTGTCTTCATACGTTCTGCAAGAGTTGTATTGTGAAGTACCTCCAAACCAGCAAGTACT GCCCCATGTGCAACATCAAGATCCATGAGACACAGCCACTGCTCAACCTCAAACTGGACC GGGTCATGCAGGACATCGTGTACAAGCTAGTGCCAGGCTTGCAAGACAGTGAAGAGAAAC GGATCCGAGAATTCTACCAGTCCCGAGGCTTGGACAGGATCACTCAGCCCAGTGGGGAAG AGCCAGCCCTGAGCAACCTCGGCCTCCCCTTCAGCAGTTTCGACCACTCAAAAGCCCACT ACTATCGCTATGATGAGCAGCTAAGCCTATGCCTGGAGCGGCTGAGTTCTGGCAAAGACA AGAATAAAAGCGTCCTGCAGAACAAATATGTGCGATGTTCTGTTAGAGCTGAGGTTCGCC ATCTCCGGAAAGTCCTCTGTCACCGCTTGATGCTAAGTCCCCAGCATGTGCAGCTCCTTT TTGACAATGAAGTTCTCCCTGATCACATGACCATGAAGCAGATATGGCTCTCCCGCTGGT TCGGCAAGCCATCTCCTTTGCTTTTACAATACAGTGTGAAAGAGAAGAGGAGGTAGGGGC CAAGCCCCTACCCCATCCCTCTCCCCTTCCCTCCCCAGATATTTATGTGAAATTAACCTC GGCTTTATTTTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 727-852, - strand, RNAz p=0.988875 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 727-852, - strand, RNAz p=0.988875 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 185-352, gnl|bosTau2|chr11 (7781587-7781754) | |
| 185-352, gnl|Hg17|chr2 (74645677-74645510) | |
| 185-352, gnl|Mm7|chr6 (83104539-83104706) | |
| 419-526, gnl|bosTau2|chr11 (7782099-7782206) | |
| 419-526, gnl|canFam2|chr17 (51703945-51703829) | |
| 419-526, gnl|danRer3|chr14 (812885-813001) | |
| 419-526, gnl|dasNov1|scaffold_220717 (4155-4039) | |
| 419-526, gnl|fr1|chrUn (206913738-206913885) | |
| 419-526, gnl|hg17|chr2 (74644726-74644842) | |
| 419-526, gnl|Hg17|chr2 (74644841-74644734) | |
| 419-526, gnl|loxAfr1|scaffold_8565 (7653-7769) | |
| 419-526, gnl|mm7|chr6 (83105189-83105073) | |
| 419-526, gnl|Mm7|chr6 (83105072-83105179) | |
| 419-526, gnl|monDom2|scaffold_10 (48162207-48162091) | |
| 419-526, gnl|oryCun1|scaffold_200457 (12677-12561) | |
| 419-526, gnl|panTro1|chr12 (77048509-77048625) | |
| 419-526, gnl|rheMac2|chr13 (74736914-74737029) | |
| 419-526, gnl|rn3|chr4 (117536248-117536094) | |
| 419-526, gnl|tetNig1|chr20 (2132144-2132256) | |
| 727-852, gnl|bosTau2|chr11 (7782934-7783058) | |
| 727-852, gnl|Hg17|chr2 (74643974-74643849) | |
| 727-852, gnl|Mm7|chr6 (83106142-83106265) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 185-352, gnl|bosTau2|chr11 (7781587-7781754) | |
| 185-352, gnl|Hg17|chr2 (74645677-74645510) | |
| 185-352, gnl|Mm7|chr6 (83104539-83104706) | |
| 419-526, gnl|bosTau2|chr11 (7782099-7782206) | |
| 419-526, gnl|canFam2|chr17 (51703945-51703829) | |
| 419-526, gnl|danRer3|chr14 (812885-813001) | |
| 419-526, gnl|dasNov1|scaffold_220717 (4155-4039) | |
| 419-526, gnl|fr1|chrUn (206913738-206913885) | |
| 419-526, gnl|hg17|chr2 (74644726-74644842) | |
| 419-526, gnl|Hg17|chr2 (74644841-74644734) | |
| 419-526, gnl|loxAfr1|scaffold_8565 (7653-7769) | |
| 419-526, gnl|mm7|chr6 (83105189-83105073) | |
| 419-526, gnl|Mm7|chr6 (83105072-83105179) | |
| 419-526, gnl|monDom2|scaffold_10 (48162207-48162091) | |
| 419-526, gnl|oryCun1|scaffold_200457 (12677-12561) | |
| 419-526, gnl|panTro1|chr12 (77048509-77048625) | |
| 419-526, gnl|rheMac2|chr13 (74736914-74737029) | |
| 419-526, gnl|rn3|chr4 (117536248-117536094) | |
| 419-526, gnl|tetNig1|chr20 (2132144-2132256) | |
| 727-852, gnl|bosTau2|chr11 (7782934-7783058) | |
| 727-852, gnl|Hg17|chr2 (74643974-74643849) | |
| 727-852, gnl|Mm7|chr6 (83106142-83106265) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| eli (0.303628) | |
| pty (0.142714) | |
| ese (0.126502) | |
| eep (0.122564) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eli (0.303628) | |
| pty (0.142714) | |
| ese (0.126502) | |
| eep (0.122564) |