Ss1.1-Thy1-THY010003C07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCTGAAGGGCCAGGCAGAAGCCGCGCGCTCTCTGGCTCCCAGGAATGCAGCTTGTTTGTG TGTGTGTGTGTCTCCTCCTTCCCGTCCCTCACTTCTTCCGCCTCTGCAGGGGATCTGCCC AAGGAGAATCCGTATGAGGATGTGGACTTGAAGAGCCGAAGGGCAGGCCGAAAACCCCAG CCGCTGTCGGAGACCTCCCTGGACTCTTTGCACAGGATGTGGAGCCCGCAGGACCGCAAG TACAACAACCCGGCCGCTCAGCTCTCCCTGAAACCTGGCAGCCAGTCCCTGCGCAGTGGG AACTGGTCGGAAAGGAAGAGCCACCGGCTGCCACGACTGCCCAAGAGGCACAGCCACGAC GACATGCTGCTGCTGGCTCAGCTGAGCCTGCCATCCTCGCCGTCCAGCCTCAACGAGGAC AGCCTCAGCACCACAAGCGAGCTGCTCTCCAGCCGCCGCGCCCGCCGCATCCCCAAGCTC GTCCAGAGAATTAACTCCATCTACAGCGCCAAGAGGGGGAAGAAGAGGTTGAAAAAGCTG TCTATGTCCAGCATTGAGACGGCCTCGCTTCGAGATGAGAATAGCGAGAGCGAGAGCGAC TCGGACGACAGGTTCAAAGCCCACACGCAGCGCCTGGTCCACATCCAGTCGGTGCTGAAG CGGGCGCCCAGCTACCGGACGCTGGAGCTGGAGCTGCTCGAGTGGCAGGAGCGGGAGCTG TTTGAGTACTTCGTGGTGGTGTCCCTCAGGAAGAGGCCGTCCCGGAACACCTACCTCCCC GAGGTCTCCTACCAGTTCCCCAAGCTGGACCGACCCACCAAGCAGATGCGGGAGGCTGAG GAGCGGCTCAAGGCCATACCCCAGTTCTGCTTCCCCGACGCCAAGGACTGGCTCCCCGTG TCTGAGTACAGCAGTGAGACTTTTTCTTTCATGCTGACGGGGGAGGACGGCAGCAGACGC TTCGGCTACTGCAGGCGCTTACTGCCAAGTGGGAAGGGGCCCCGGCTGCCAGAGGTTTAC TGTGTCATCAGCCGCCTCGGCTGCTTCGGCCTGTTTTCCAAGGTCCTGGACGAGGTGGAG CGCCGGCGGGGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCTGAAGGGCCAGGCAGAAGCCGCGCGCTCTCTGGCTCCCAGGAATGCAGCTTGTTTGTG TGTGTGTGTGTCTCCTCCTTCCCGTCCCTCACTTCTTCCGCCTCTGCAGGGGATCTGCCC AAGGAGAATCCGTATGAGGATGTGGACTTGAAGAGCCGAAGGGCAGGCCGAAAACCCCAG CCGCTGTCGGAGACCTCCCTGGACTCTTTGCACAGGATGTGGAGCCCGCAGGACCGCAAG TACAACAACCCGGCCGCTCAGCTCTCCCTGAAACCTGGCAGCCAGTCCCTGCGCAGTGGG AACTGGTCGGAAAGGAAGAGCCACCGGCTGCCACGACTGCCCAAGAGGCACAGCCACGAC GACATGCTGCTGCTGGCTCAGCTGAGCCTGCCATCCTCGCCGTCCAGCCTCAACGAGGAC AGCCTCAGCACCACAAGCGAGCTGCTCTCCAGCCGCCGCGCCCGCCGCATCCCCAAGCTC GTCCAGAGAATTAACTCCATCTACAGCGCCAAGAGGGGGAAGAAGAGGTTGAAAAAGCTG TCTATGTCCAGCATTGAGACGGCCTCGCTTCGAGATGAGAATAGCGAGAGCGAGAGCGAC TCGGACGACAGGTTCAAAGCCCACACGCAGCGCCTGGTCCACATCCAGTCGGTGCTGAAG CGGGCGCCCAGCTACCGGACGCTGGAGCTGGAGCTGCTCGAGTGGCAGGAGCGGGAGCTG TTTGAGTACTTCGTGGTGGTGTCCCTCAGGAAGAGGCCGTCCCGGAACACCTACCTCCCC GAGGTCTCCTACCAGTTCCCCAAGCTGGACCGACCCACCAAGCAGATGCGGGAGGCTGAG GAGCGGCTCAAGGCCATACCCCAGTTCTGCTTCCCCGACGCCAAGGACTGGCTCCCCGTG TCTGAGTACAGCAGTGAGACTTTTTCTTTCATGCTGACGGGGGAGGACGGCAGCAGACGC TTCGGCTACTGCAGGCGCTTACTGCCAAGTGGGAAGGGGCCCCGGCTGCCAGAGGTTTAC TGTGTCATCAGCCGCCTCGGCTGCTTCGGCCTGTTTTCCAAGGTCCTGGACGAGGTGGAG CGCCGGCGGGGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 339-458, - strand, RNAz p=0.831877 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 339-458, - strand, RNAz p=0.831877 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 259-477, gnl|bosTau2|chr15 (30275879-30275661) | |
| 259-477, gnl|canFam2|chr21 (35319846-35320084) | |
| 259-477, gnl|danRer3|chr7 (19159298-19159066) | |
| 259-477, gnl|dasNov1|scaffold_7161 (5675-5908) | |
| 259-477, gnl|echTel1|scaffold_182954 (2865-2627) | |
| 259-477, gnl|fr1|chrUn (201693631-201693854) | |
| 259-477, gnl|galGal2|chr5 (7212530-7212295) | |
| 259-477, gnl|hg17|chr11 (8693723-8693961) | |
| 259-477, gnl|Hg17|chr11 (8693944-8693726) | |
| 259-477, gnl|mm7|chr7 (105457588-105457826) | |
| 259-477, gnl|Mm7|chr7 (105457809-105457591) | |
| 259-477, gnl|monDom2|scaffold_10 (58767427-58767667) | |
| 259-477, gnl|oryCun1|scaffold_174129 (14446-14208) | |
| 259-477, gnl|panTro1|chr9_random (39368092-39367854) | |
| 259-477, gnl|rheMac2|chr14 (63232453-63232215) | |
| 259-477, gnl|rn3|chr1 (167248861-167249099) | |
| 259-477, gnl|tetNig1|chr5 (6464821-6464598) | |
| 259-477, gnl|xenTro1|scaffold_1393 (14267-14034) | |
| 618-811, gnl|bosTau2|chr15 (30272963-30272769) | |
| 618-811, gnl|canFam2|chr21 (35317000-35317123) | |
| 618-811, gnl|danRer3|chr7 (19163770-19163649) | |
| 618-811, gnl|dasNov1|scaffold_7161 (2681-2804) | |
| 618-811, gnl|echTel1|scaffold_182954 (6194-6072) | |
| 618-811, gnl|fr1|chrUn (201692728-201692849) | |
| 618-811, gnl|galGal2|chr5 (7219391-7219268) | |
| 618-811, gnl|hg17|chr11 (8690671-8690794) | |
| 618-811, gnl|Hg17|chr11 (8690860-8690666) | |
| 618-811, gnl|loxAfr1|scaffold_16305 (32830-32955) | |
| 618-811, gnl|mm7|chr7 (105454930-105455053) | |
| 618-811, gnl|Mm7|chr7 (105455119-105454928) | |
| 618-811, gnl|monDom2|scaffold_10 (58760497-58760620) | |
| 618-811, gnl|oryCun1|scaffold_174129 (17161-17038) | |
| 618-811, gnl|panTro1|chr9_random (39371155-39371032) | |
| 618-811, gnl|rheMac2|chr14 (63235385-63235262) | |
| 618-811, gnl|rn3|chr1 (167246228-167246351) | |
| 618-811, gnl|tetNig1|chr5 (6465819-6465698) | |
| 618-811, gnl|xenTro1|scaffold_1393 (15650-15528) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 259-477, gnl|bosTau2|chr15 (30275879-30275661) | |
| 259-477, gnl|canFam2|chr21 (35319846-35320084) | |
| 259-477, gnl|danRer3|chr7 (19159298-19159066) | |
| 259-477, gnl|dasNov1|scaffold_7161 (5675-5908) | |
| 259-477, gnl|echTel1|scaffold_182954 (2865-2627) | |
| 259-477, gnl|fr1|chrUn (201693631-201693854) | |
| 259-477, gnl|galGal2|chr5 (7212530-7212295) | |
| 259-477, gnl|hg17|chr11 (8693723-8693961) | |
| 259-477, gnl|Hg17|chr11 (8693944-8693726) | |
| 259-477, gnl|mm7|chr7 (105457588-105457826) | |
| 259-477, gnl|Mm7|chr7 (105457809-105457591) | |
| 259-477, gnl|monDom2|scaffold_10 (58767427-58767667) | |
| 259-477, gnl|oryCun1|scaffold_174129 (14446-14208) | |
| 259-477, gnl|panTro1|chr9_random (39368092-39367854) | |
| 259-477, gnl|rheMac2|chr14 (63232453-63232215) | |
| 259-477, gnl|rn3|chr1 (167248861-167249099) | |
| 259-477, gnl|tetNig1|chr5 (6464821-6464598) | |
| 259-477, gnl|xenTro1|scaffold_1393 (14267-14034) | |
| 618-811, gnl|bosTau2|chr15 (30272963-30272769) | |
| 618-811, gnl|canFam2|chr21 (35317000-35317123) | |
| 618-811, gnl|danRer3|chr7 (19163770-19163649) | |
| 618-811, gnl|dasNov1|scaffold_7161 (2681-2804) | |
| 618-811, gnl|echTel1|scaffold_182954 (6194-6072) | |
| 618-811, gnl|fr1|chrUn (201692728-201692849) | |
| 618-811, gnl|galGal2|chr5 (7219391-7219268) | |
| 618-811, gnl|hg17|chr11 (8690671-8690794) | |
| 618-811, gnl|Hg17|chr11 (8690860-8690666) | |
| 618-811, gnl|loxAfr1|scaffold_16305 (32830-32955) | |
| 618-811, gnl|mm7|chr7 (105454930-105455053) | |
| 618-811, gnl|Mm7|chr7 (105455119-105454928) | |
| 618-811, gnl|monDom2|scaffold_10 (58760497-58760620) | |
| 618-811, gnl|oryCun1|scaffold_174129 (17161-17038) | |
| 618-811, gnl|panTro1|chr9_random (39371155-39371032) | |
| 618-811, gnl|rheMac2|chr14 (63235385-63235262) | |
| 618-811, gnl|rn3|chr1 (167246228-167246351) | |
| 618-811, gnl|tetNig1|chr5 (6465819-6465698) | |
| 618-811, gnl|xenTro1|scaffold_1393 (15650-15528) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.122564) |