Ss1.1-Thy1-THY010003D06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGAGAGTATGAGGCGAGCTCTGGCCCGGGTGCGGCCAGGCTTCGGGGGCGAAGGCGCGC GGGTCGATCCTGCCGCCGCCATCTAACTCGCTGCGCCCGCGAGGCTCGGCGCGCGGATGG TGCCGGTGCGGCTGGGGTGTTGAGCCGCGTGTCCCCTCCCCTTCCTCCCCTCCCCCACGC GGTGGTCTCCCCTCCTCCCCCGGCCCGGCAGAGCCATGTCTCGGGGTGGTTCCTGCCCAC ACCTGTTGTGGGACGTGAGGAAAAGGTCTCTCGGGCTGGAGGACCCCTCCCGGCTGCGGA GCCGCTACCTGGGAAGAAGAGAATTTATCCAAAGATTAAAACTTGAAGCAACCCTGAATG TGCATGATGGCTGTGTTAATACAATCTGTTGGAATGAGACTGGAGAATATATTTTATCTG GCTCAGATGACACCAAGTTAGTAATTAGTAATCCTTACAGCAGAAAGGTTTTGACACCAA TTCGTTCAGGGCACCGAGCAAATATATTTAGTGCAAAGTTCTTGCCATGCACAAATGATA AGCAGATTGTATCCTGCTCTGGTGATGGAGTAATATTTTATACCAATGTTGAGCAAGATG CAGAAACCAACAGACAATGCCAGTTTACGTGCCATTATGGAACTACCTATGAGATTATGA CTGTACCTAATGACCCGTATACTTTTCTCTCTTGTGGTGAAGATGGAACTGTTAGGTGGT TTGATACACGCATCAAAACTAGCTGCACAAAAGAAGATTGCAAAGATGATATTTTAATTA ACTGCCGACGTGCTGCCACATCTGTAGCTATTTGTCCACCAATACCGTATTATCTTGCTG TTGGTTGTTCTGATAGCTCAGTACGAATATATGATCGGCGAATGCTGGGCACAAGAGCTA CAGGGAATTATGCAGGTCGAGGAACTACTGGAATGGTCGCCCGTTTTATCCCTTCCCATC TTAATAATAAGTCCTGCAGGGTGACATCTCTGTGTTACAGTGAAGATGGTCAAGAGATTC TTGTTAGTTACTCTTCAGATTACATATATCTTTTTGATCCAAAAGATGATACAGCACGAG AACTTAAAACTCCTTCTGCAGAAGAGAGAAGAGAAGAATTACGACAGCCTCCAGTTAAGC GTTTGAGACTTCGTGGTGATTGGTCAGATACTGGACCCCGAGCAAGGCCTGAGAGTGAAA GAGAACGAGATGGAGAGCAAAGTCCCAATGTGTCACTGATGCAGAGAATGTCTGACATGT TATCACGGTGGTTTGAGGAAGCAAGTGAAGTTGCACAAAGCAATAGAGGACGAGGAAGAC CTCGACCCAGAGGTGGAACAACTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGAGAGTATGAGGCGAGCTCTGGCCCGGGTGCGGCCAGGCTTCGGGGGCGAAGGCGCGC GGGTCGATCCTGCCGCCGCCATCTAACTCGCTGCGCCCGCGAGGCTCGGCGCGCGGATGG TGCCGGTGCGGCTGGGGTGTTGAGCCGCGTGTCCCCTCCCCTTCCTCCCCTCCCCCACGC GGTGGTCTCCCCTCCTCCCCCGGCCCGGCAGAGCCATGTCTCGGGGTGGTTCCTGCCCAC ACCTGTTGTGGGACGTGAGGAAAAGGTCTCTCGGGCTGGAGGACCCCTCCCGGCTGCGGA GCCGCTACCTGGGAAGAAGAGAATTTATCCAAAGATTAAAACTTGAAGCAACCCTGAATG TGCATGATGGCTGTGTTAATACAATCTGTTGGAATGAGACTGGAGAATATATTTTATCTG GCTCAGATGACACCAAGTTAGTAATTAGTAATCCTTACAGCAGAAAGGTTTTGACACCAA TTCGTTCAGGGCACCGAGCAAATATATTTAGTGCAAAGTTCTTGCCATGCACAAATGATA AGCAGATTGTATCCTGCTCTGGTGATGGAGTAATATTTTATACCAATGTTGAGCAAGATG CAGAAACCAACAGACAATGCCAGTTTACGTGCCATTATGGAACTACCTATGAGATTATGA CTGTACCTAATGACCCGTATACTTTTCTCTCTTGTGGTGAAGATGGAACTGTTAGGTGGT TTGATACACGCATCAAAACTAGCTGCACAAAAGAAGATTGCAAAGATGATATTTTAATTA ACTGCCGACGTGCTGCCACATCTGTAGCTATTTGTCCACCAATACCGTATTATCTTGCTG TTGGTTGTTCTGATAGCTCAGTACGAATATATGATCGGCGAATGCTGGGCACAAGAGCTA CAGGGAATTATGCAGGTCGAGGAACTACTGGAATGGTCGCCCGTTTTATCCCTTCCCATC TTAATAATAAGTCCTGCAGGGTGACATCTCTGTGTTACAGTGAAGATGGTCAAGAGATTC TTGTTAGTTACTCTTCAGATTACATATATCTTTTTGATCCAAAAGATGATACAGCACGAG AACTTAAAACTCCTTCTGCAGAAGAGAGAAGAGAAGAATTACGACAGCCTCCAGTTAAGC GTTTGAGACTTCGTGGTGATTGGTCAGATACTGGACCCCGAGCAAGGCCTGAGAGTGAAA GAGAACGAGATGGAGAGCAAAGTCCCAATGTGTCACTGATGCAGAGAATGTCTGACATGT TATCACGGTGGTTTGAGGAAGCAAGTGAAGTTGCACAAAGCAATAGAGGACGAGGAAGAC CTCGACCCAGAGGTGGAACAACTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 159-271, - strand, RNAz p=0.920383 | |
| 505-653, + strand, RNAz p=0.965689 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 159-271, - strand, RNAz p=0.920383 | |
| 505-653, + strand, RNAz p=0.965689 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_018442, + |
| Aligned organism(s): 81 entry(ies) | More info |
| Aligned organism(s): 81 entry(ies) | Help | Less info |
| 3-313, gnl|bosTau2|chr3 (614086-613777) | |
| 3-313, gnl|canFam2|chr7 (33511075-33510769) | |
| 3-313, gnl|hg17|chr1 (164637594-164637906) | |
| 3-313, gnl|Hg17|chr1 (164637603-164637905) | |
| 3-313, gnl|loxAfr1|scaffold_6846 (111357-111667) | |
| 3-313, gnl|mm7|chr1 (165431155-165430834) | |
| 3-313, gnl|Mm7|chr1 (165431147-165430833) | |
| 3-313, gnl|monDom2|scaffold_16 (18773772-18774116) | |
| 3-313, gnl|oryCun1|scaffold_167042 (10643-10324) | |
| 3-313, gnl|panTro1|chr1 (146893997-146894306) | |
| 3-313, gnl|rheMac2|chr1 (197663281-197663592) | |
| 3-313, gnl|rn3|chr13 (81198058-81197741) | |
| 466-653, gnl|bosTau2|chr3 (668667-668854) | |
| 466-653, gnl|canFam2|chr7 (33476886-33477067) | |
| 466-653, gnl|danRer3|chr9 (31052086-31052269) | |
| 466-653, gnl|echTel1|scaffold_310109 (188-373) | |
| 466-653, gnl|fr1|chrUn (203885828-203886011) | |
| 466-653, gnl|galGal2|chr1 (85371270-85371454) | |
| 466-653, gnl|Hg17|chr1 (164675724-164675911) | |
| 466-653, gnl|hg17|chr15 (27314197-27314384) | |
| 466-653, gnl|Mm7|chr1 (165393943-165393756) | |
| 466-653, gnl|mm7|chr4 (102220525-102220422) | |
| 466-653, gnl|monDom2|scaffold_16 (18822079-18821892) | |
| 466-653, gnl|oryCun1|scaffold_167042 (9983-10170) | |
| 466-653, gnl|panTro1|chr16 (19724527-19724340) | |
| 466-653, gnl|rheMac2|chr7 (8319084-8319271) | |
| 466-653, gnl|rn3|chr13 (81171486-81171650) | |
| 466-653, gnl|tetNig1|chr2 (9277694-9277511) | |
| 466-653, gnl|xenTro1|scaffold_19 (3294527-3294712) | |
| 902-1117, gnl|bosTau2|chr3 (758788-759003) | |
| 902-1117, gnl|canFam2|chr7 (33461059-33460794) | |
| 902-1117, gnl|canFam2|chr7 (33460822-33461035) | |
| 902-1117, gnl|danRer3|chr9 (31048129-31047862) | |
| 902-1117, gnl|danRer3|chr9 (31047891-31048101) | |
| 902-1117, gnl|dasNov1|scaffold_21835 (46015-45751) | |
| 902-1117, gnl|dasNov1|scaffold_21835 (45778-45991) | |
| 902-1117, gnl|echTel1|scaffold_204246 (877-634) | |
| 902-1117, gnl|echTel1|scaffold_204246 (643-856) | |
| 902-1117, gnl|fr1|chrUn (203885191-203884961) | |
| 902-1117, gnl|fr1|chrUn (203884966-203885176) | |
| 902-1117, gnl|galGal2|chr1 (85355107-85354849) | |
| 902-1117, gnl|galGal2|chr1 (85363609-85363822) | |
| 902-1117, gnl|hg17|chr1 (164694101-164694365) | |
| 902-1117, gnl|Hg17|chr1 (164694120-164694335) | |
| 902-1117, gnl|hg17|chr15 (27313732-27313945) | |
| 902-1117, gnl|loxAfr1|scaffold_12418 (26908-27174) | |
| 902-1117, gnl|loxAfr1|scaffold_12418 (27145-26932) | |
| 902-1117, gnl|mm7|chr1 (165370787-165370528) | |
| 902-1117, gnl|mm7|chr1 (165370555-165370768) | |
| 902-1117, gnl|Mm7|chr1 (165370769-165370555) | |
| 902-1117, gnl|monDom2|scaffold_16 (18838562-18838816) | |
| 902-1117, gnl|monDom2|scaffold_16 (18838795-18838582) | |
| 902-1117, gnl|oryCun1|scaffold_199963 (101081-100818) | |
| 902-1117, gnl|oryCun1|scaffold_199963 (100845-101058) | |
| 902-1117, gnl|panTro1|chr1 (146950672-146950936) | |
| 902-1117, gnl|panTro1|chr16 (19724984-19724777) | |
| 902-1117, gnl|rheMac2|chr1 (197723070-197723334) | |
| 902-1117, gnl|rheMac2|chr7 (8318619-8318832) | |
| 902-1117, gnl|rn3|chr13 (81161633-81161374) | |
| 902-1117, gnl|rn3|chr13 (81161401-81161614) | |
| 902-1117, gnl|tetNig1|chr2 (9278361-9278593) | |
| 902-1117, gnl|tetNig1|chr2 (9278585-9278375) | |
| 902-1117, gnl|xenTro1|scaffold_19 (3280291-3280038) | |
| 902-1117, gnl|xenTro1|scaffold_19 (3280055-3280268) | |
| 1212-1334, gnl|bosTau2|chr3 (767281-767403) | |
| 1212-1334, gnl|canFam2|chr7 (33452523-33452602) | |
| 1212-1334, gnl|danRer3|chr9 (31037509-31037585) | |
| 1212-1334, gnl|dasNov1|scaffold_21835 (37619-37698) | |
| 1212-1334, gnl|echTel1|scaffold_262085 (11207-11286) | |
| 1212-1334, gnl|fr1|chrUn (203883323-203883402) | |
| 1212-1334, gnl|Hg17|chr1 (164704765-164704887) | |
| 1212-1334, gnl|hg17|chr15 (27313516-27313595) | |
| 1212-1334, gnl|loxAfr1|scaffold_12418 (36415-36336) | |
| 1212-1334, gnl|mm7|chr1 (165361313-165361392) | |
| 1212-1334, gnl|Mm7|chr1 (165361434-165361312) | |
| 1212-1334, gnl|monDom2|scaffold_16 (18855192-18855116) | |
| 1212-1334, gnl|oryCun1|scaffold_199963 (96428-96507) | |
| 1212-1334, gnl|panTro1|chr16 (19725200-19725121) | |
| 1212-1334, gnl|rheMac2|chr7 (8318403-8318482) | |
| 1212-1334, gnl|rn3|chr13 (81154039-81154118) | |
| 1212-1334, gnl|tetNig1|chr2 (9279828-9279776) |
| Aligned organism(s): 81 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-313, gnl|bosTau2|chr3 (614086-613777) | |
| 3-313, gnl|canFam2|chr7 (33511075-33510769) | |
| 3-313, gnl|hg17|chr1 (164637594-164637906) | |
| 3-313, gnl|Hg17|chr1 (164637603-164637905) | |
| 3-313, gnl|loxAfr1|scaffold_6846 (111357-111667) | |
| 3-313, gnl|mm7|chr1 (165431155-165430834) | |
| 3-313, gnl|Mm7|chr1 (165431147-165430833) | |
| 3-313, gnl|monDom2|scaffold_16 (18773772-18774116) | |
| 3-313, gnl|oryCun1|scaffold_167042 (10643-10324) | |
| 3-313, gnl|panTro1|chr1 (146893997-146894306) | |
| 3-313, gnl|rheMac2|chr1 (197663281-197663592) | |
| 3-313, gnl|rn3|chr13 (81198058-81197741) | |
| 466-653, gnl|bosTau2|chr3 (668667-668854) | |
| 466-653, gnl|canFam2|chr7 (33476886-33477067) | |
| 466-653, gnl|danRer3|chr9 (31052086-31052269) | |
| 466-653, gnl|echTel1|scaffold_310109 (188-373) | |
| 466-653, gnl|fr1|chrUn (203885828-203886011) | |
| 466-653, gnl|galGal2|chr1 (85371270-85371454) | |
| 466-653, gnl|Hg17|chr1 (164675724-164675911) | |
| 466-653, gnl|hg17|chr15 (27314197-27314384) | |
| 466-653, gnl|Mm7|chr1 (165393943-165393756) | |
| 466-653, gnl|mm7|chr4 (102220525-102220422) | |
| 466-653, gnl|monDom2|scaffold_16 (18822079-18821892) | |
| 466-653, gnl|oryCun1|scaffold_167042 (9983-10170) | |
| 466-653, gnl|panTro1|chr16 (19724527-19724340) | |
| 466-653, gnl|rheMac2|chr7 (8319084-8319271) | |
| 466-653, gnl|rn3|chr13 (81171486-81171650) | |
| 466-653, gnl|tetNig1|chr2 (9277694-9277511) | |
| 466-653, gnl|xenTro1|scaffold_19 (3294527-3294712) | |
| 902-1117, gnl|bosTau2|chr3 (758788-759003) | |
| 902-1117, gnl|canFam2|chr7 (33461059-33460794) | |
| 902-1117, gnl|canFam2|chr7 (33460822-33461035) | |
| 902-1117, gnl|danRer3|chr9 (31048129-31047862) | |
| 902-1117, gnl|danRer3|chr9 (31047891-31048101) | |
| 902-1117, gnl|dasNov1|scaffold_21835 (46015-45751) | |
| 902-1117, gnl|dasNov1|scaffold_21835 (45778-45991) | |
| 902-1117, gnl|echTel1|scaffold_204246 (877-634) | |
| 902-1117, gnl|echTel1|scaffold_204246 (643-856) | |
| 902-1117, gnl|fr1|chrUn (203885191-203884961) | |
| 902-1117, gnl|fr1|chrUn (203884966-203885176) | |
| 902-1117, gnl|galGal2|chr1 (85355107-85354849) | |
| 902-1117, gnl|galGal2|chr1 (85363609-85363822) | |
| 902-1117, gnl|hg17|chr1 (164694101-164694365) | |
| 902-1117, gnl|Hg17|chr1 (164694120-164694335) | |
| 902-1117, gnl|hg17|chr15 (27313732-27313945) | |
| 902-1117, gnl|loxAfr1|scaffold_12418 (26908-27174) | |
| 902-1117, gnl|loxAfr1|scaffold_12418 (27145-26932) | |
| 902-1117, gnl|mm7|chr1 (165370787-165370528) | |
| 902-1117, gnl|mm7|chr1 (165370555-165370768) | |
| 902-1117, gnl|Mm7|chr1 (165370769-165370555) | |
| 902-1117, gnl|monDom2|scaffold_16 (18838562-18838816) | |
| 902-1117, gnl|monDom2|scaffold_16 (18838795-18838582) | |
| 902-1117, gnl|oryCun1|scaffold_199963 (101081-100818) | |
| 902-1117, gnl|oryCun1|scaffold_199963 (100845-101058) | |
| 902-1117, gnl|panTro1|chr1 (146950672-146950936) | |
| 902-1117, gnl|panTro1|chr16 (19724984-19724777) | |
| 902-1117, gnl|rheMac2|chr1 (197723070-197723334) | |
| 902-1117, gnl|rheMac2|chr7 (8318619-8318832) | |
| 902-1117, gnl|rn3|chr13 (81161633-81161374) | |
| 902-1117, gnl|rn3|chr13 (81161401-81161614) | |
| 902-1117, gnl|tetNig1|chr2 (9278361-9278593) | |
| 902-1117, gnl|tetNig1|chr2 (9278585-9278375) | |
| 902-1117, gnl|xenTro1|scaffold_19 (3280291-3280038) | |
| 902-1117, gnl|xenTro1|scaffold_19 (3280055-3280268) | |
| 1212-1334, gnl|bosTau2|chr3 (767281-767403) | |
| 1212-1334, gnl|canFam2|chr7 (33452523-33452602) | |
| 1212-1334, gnl|danRer3|chr9 (31037509-31037585) | |
| 1212-1334, gnl|dasNov1|scaffold_21835 (37619-37698) | |
| 1212-1334, gnl|echTel1|scaffold_262085 (11207-11286) | |
| 1212-1334, gnl|fr1|chrUn (203883323-203883402) | |
| 1212-1334, gnl|Hg17|chr1 (164704765-164704887) | |
| 1212-1334, gnl|hg17|chr15 (27313516-27313595) | |
| 1212-1334, gnl|loxAfr1|scaffold_12418 (36415-36336) | |
| 1212-1334, gnl|mm7|chr1 (165361313-165361392) | |
| 1212-1334, gnl|Mm7|chr1 (165361434-165361312) | |
| 1212-1334, gnl|monDom2|scaffold_16 (18855192-18855116) | |
| 1212-1334, gnl|oryCun1|scaffold_199963 (96428-96507) | |
| 1212-1334, gnl|panTro1|chr16 (19725200-19725121) | |
| 1212-1334, gnl|rheMac2|chr7 (8318403-8318482) | |
| 1212-1334, gnl|rn3|chr13 (81154039-81154118) | |
| 1212-1334, gnl|tetNig1|chr2 (9279828-9279776) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ldo (0.194005) | |
| ste (0.135208) |