Non-Coding RNA Search

Ss1.1-Thy1-THY010003G05.5

Sequence:


               
               AGAGTAATCCCACATGCTTTTCACAAACATTATAAGACCTTTCAGGGTCTTTCAGGAAGT
TCTGATCACTGAATTAAAGGGTTTGCTCCCCAGATGTATAATGGTCCTGCTCTAGCCATT
TATAGTTTTGTTTCGGATTGAAAATTATCACCAAAAAAGTGCATTAGTGACATTTTTAGC
ATAGAACCAAATTATACTATAGTCTTTTGTTGAGTTTATTACCGTCACATTTGAGAAGCA
GCACTTTATACAGATTTTTCAGAAAGTTTTTAAAAAGTGCAAAACCCTTAAAAATGTTTA
CTGGTTGTATTAGTTTCCTTCGTCTGCTATAACAAATTACCACAAACCTGGTGGCTTAAC
ACATCAGAAATTTATTCTCTATGAGATCTTGGATTATCTTTACTATCATTACTCTGAATT
CTTTTTCAGGTAGATTGCCTTTCTCCACTTCACTTAGTTGTTCTTCTAGGGTTTTATCTT
ATTCGTTTGTCTAGAACATATTTCTCTGCCATCTTATTTTGTCCGGCTTTCTGTGTTTTT
GGTCTCCTTTCCACAGGCTGCATGATCATAGTTGTTCTTACTTCTGGTGTCTGCCTCCTG
GTGGGGTTGTTCTAGGGGCTTGTGCAGGCTTCCTGATGAAAGGGACTGGTGCCTGCCCAC
CGGTGGGTGCAGCTGGGTCTGGTCCCTCTGGTGGGCAGAACCACGTCAAGGGGTGTGTTT
AGAGGCAGCTATGGGCTCAGGATGACTTTAGGCAGCCCTGTCTGCTGATGCGTGGGGCTG
TGTTCCCACCCTGTTGGTTATTTGGCCTGAGGGGTCCCAGCCCTGGAGCCTACAGCCTAT
TGGGTGGGGCCATTTTGGTATCAAATGACAACTTCAAGAGAGCCATGCTCATGCCGATGA
TAGCAACTCCACCCTCCACCATCAGTATTCTTATCCCACAGTGAGCCACAGCCACTATTT
CCCCAGGAGACCCTCAGCAGCTAGGTCTGGCCCAGGCTGCTATGAAATCACTGCTTTTTC
TCATAATCCAGATTATCTAAATCAGAATTCCTTTGC------------------------
------------------------------------------------------------
------------------------------------------------TTCTGATAATTT
TCAGAATTCAGCCAGGAAGAATCCATTTAGCTTTCAAGGACTGGCAATAATCCTCCTTTT
CTCAGAGCTACACCCTTTAAGCTGCAGCTCTGGCCTCTTGGCCTATGGATTGAGTCTTTG
CCTATGTGCCATGGCTTGTACTTCTGCCTCTGAATCTGCAGCTCTGCCCTAGGGTTGGTC
CTTTCTATTGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGTAATCCCACATGCTTTTCACAAACATTATAAGACCTTTCAGGGTCTTTCAGGAAGT
TCTGATCACTGAATTAAAGGGTTTGCTCCCCAGATGTATAATGGTCCTGCTCTAGCCATT
TATAGTTTTGTTTCGGATTGAAAATTATCACCAAAAAAGTGCATTAGTGACATTTTTAGC
ATAGAACCAAATTATACTATAGTCTTTTGTTGAGTTTATTACCGTCACATTTGAGAAGCA
GCACTTTATACAGATTTTTCAGAAAGTTTTTAAAAAGTGCAAAACCCTTAAAAATGTTTA
CTGGTTGTATTAGTTTCCTTCGTCTGCTATAACAAATTACCACAAACCTGGTGGCTTAAC
ACATCAGAAATTTATTCTCTATGAGATCTTGGATTATCTTTACTATCATTACTCTGAATT
CTTTTTCAGGTAGATTGCCTTTCTCCACTTCACTTAGTTGTTCTTCTAGGGTTTTATCTT
ATTCGTTTGTCTAGAACATATTTCTCTGCCATCTTATTTTGTCCGGCTTTCTGTGTTTTT
GGTCTCCTTTCCACAGGCTGCATGATCATAGTTGTTCTTACTTCTGGTGTCTGCCTCCTG
GTGGGGTTGTTCTAGGGGCTTGTGCAGGCTTCCTGATGAAAGGGACTGGTGCCTGCCCAC
CGGTGGGTGCAGCTGGGTCTGGTCCCTCTGGTGGGCAGAACCACGTCAAGGGGTGTGTTT
AGAGGCAGCTATGGGCTCAGGATGACTTTAGGCAGCCCTGTCTGCTGATGCGTGGGGCTG
TGTTCCCACCCTGTTGGTTATTTGGCCTGAGGGGTCCCAGCCCTGGAGCCTACAGCCTAT
TGGGTGGGGCCATTTTGGTATCAAATGACAACTTCAAGAGAGCCATGCTCATGCCGATGA
TAGCAACTCCACCCTCCACCATCAGTATTCTTATCCCACAGTGAGCCACAGCCACTATTT
CCCCAGGAGACCCTCAGCAGCTAGGTCTGGCCCAGGCTGCTATGAAATCACTGCTTTTTC
TCATAATCCAGATTATCTAAATCAGAATTCCTTTGC------------------------
------------------------------------------------------------
------------------------------------------------TTCTGATAATTT
TCAGAATTCAGCCAGGAAGAATCCATTTAGCTTTCAAGGACTGGCAATAATCCTCCTTTT
CTCAGAGCTACACCCTTTAAGCTGCAGCTCTGGCCTCTTGGCCTATGGATTGAGTCTTTG
CCTATGTGCCATGGCTTGTACTTCTGCCTCTGAATCTGCAGCTCTGCCCTAGGGTTGGTC
CTTTCTATTGAA

Aligned organism(s): 1 entry(ies)

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Aligned organism(s): 1 entry(ies)

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               370-850, gnl|bosTau2|chr1 (85791222-85790748)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               370-850, gnl|bosTau2|chr1 (85791222-85790748)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cje (0.165235)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.165235)