Non-Coding RNA Search

Ss1.1-Thy1-THY010004C11.5

Sequence:


               
               GAGCACCTGCTGTGCCATGTGGACACTGGTACCTGTCACCTTTGCCCTCAGGCTGCTGAG
CACCTTCGTGCAGCCCCTGGGCTCGCTGGGCAGCAGCCTGGGGCCCCTTCCTCTGGCTCT
CTGGGCAGCTTTCTGGCGGGCAGGGGGTGATAGGAGCCGGCAGCAGCTGCAGGGTAAAAC
AGAAGCTGGGGAACCCCCGAGGGCACAGGAGGACAGATCTGCCCACCACCCCCACTAGCG
TCAATTACCACTTCACCCGCCAGTGCAACTACAAGTGTGGCTTCTGCTTCCACACGGCCA
AGACATCCTTCGTGCTGCCCCTGGAGGAAGCCAAGGGAGAGGCTTGTGGCTGCTGAAGGG
AGCGGGTATGGAGAAGATCAACTTTTCAGGCGGAGAGCCGTTTATCCACGACCGGGGCGA
GTACCTGGGCAAGCTGGTCAGGTTCTGCAAGGAGGAGCTACAGCTGCCCAGTGTCAGCAT
CGTGAGCAACGGGAGCCTGATCCGGGAGAGGTGGTTCAAGAGCTATGGTGAATATCTGGA
CATTCTTGCCATCTCCTGTGACAGCTTTGATGAGCAGGTCAATGTCCTTATTGGCCGTGG
TCAGGGAAAGAAGAACCATGTGGAAAATCTCCAAAAACTGAGGACGTGGTGCAGGGATTA
TAAAGTGGCCTTCAAGATAAATTCAGTCATCAATCGCTTCAATGTGGAAGAAGATATGAC
AGAACACATCAAAGCTCTGAACCCTGTCCGCTGGAAGGTCTTCCAATGCCTCTTAATTGA
GGGTGAGAATGTTGGAGAAGATGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCACCTGCTGTGCCATGTGGACACTGGTACCTGTCACCTTTGCCCTCAGGCTGCTGAG
CACCTTCGTGCAGCCCCTGGGCTCGCTGGGCAGCAGCCTGGGGCCCCTTCCTCTGGCTCT
CTGGGCAGCTTTCTGGCGGGCAGGGGGTGATAGGAGCCGGCAGCAGCTGCAGGGTAAAAC
AGAAGCTGGGGAACCCCCGAGGGCACAGGAGGACAGATCTGCCCACCACCCCCACTAGCG
TCAATTACCACTTCACCCGCCAGTGCAACTACAAGTGTGGCTTCTGCTTCCACACGGCCA
AGACATCCTTCGTGCTGCCCCTGGAGGAAGCCAAGGGAGAGGCTTGTGGCTGCTGAAGGG
AGCGGGTATGGAGAAGATCAACTTTTCAGGCGGAGAGCCGTTTATCCACGACCGGGGCGA
GTACCTGGGCAAGCTGGTCAGGTTCTGCAAGGAGGAGCTACAGCTGCCCAGTGTCAGCAT
CGTGAGCAACGGGAGCCTGATCCGGGAGAGGTGGTTCAAGAGCTATGGTGAATATCTGGA
CATTCTTGCCATCTCCTGTGACAGCTTTGATGAGCAGGTCAATGTCCTTATTGGCCGTGG
TCAGGGAAAGAAGAACCATGTGGAAAATCTCCAAAAACTGAGGACGTGGTGCAGGGATTA
TAAAGTGGCCTTCAAGATAAATTCAGTCATCAATCGCTTCAATGTGGAAGAAGATATGAC
AGAACACATCAAAGCTCTGAACCCTGTCCGCTGGAAGGTCTTCCAATGCCTCTTAATTGA
GGGTGAGAATGTTGGAGAAGATGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47523214|ref|NP_998982.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47523214|ref|NP_998982.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               42-233, + strand, RNAz p=0.926438

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               42-233, + strand, RNAz p=0.926438

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               3-367, gnl|bosTau2|chr11 (70643986-70644351)
               

               
               3-367, gnl|Hg17|chr2 (6968519-6968877)
               

               
               3-367, gnl|Mm7|chr12 (24292251-24291889)
               


               
               527-759, gnl|bosTau2|chr11 (70652686-70652918)
               

               
               527-759, gnl|canFam2|chr17 (7473561-7473830)
               

               
               527-759, gnl|danRer3|chr17 (24730815-24730550)
               

               
               527-759, gnl|dasNov1|scaffold_10914 (52077-51807)
               

               
               527-759, gnl|echTel1|scaffold_282570 (4011-4282)
               

               
               527-759, gnl|fr1|chrUn (76282450-76282187)
               

               
               527-759, gnl|galGal2|chr3 (93285401-93285660)
               

               
               527-759, gnl|hg17|chr2 (6977640-6977911)
               

               
               527-759, gnl|Hg17|chr2 (6977663-6977895)
               

               
               527-759, gnl|mm7|chr12 (24286631-24286348)
               

               
               527-759, gnl|Mm7|chr12 (24286596-24286364)
               

               
               527-759, gnl|monDom2|scaffold_1 (123322537-123322811)
               

               
               527-759, gnl|panTro1|chr12 (7631353-7631624)
               

               
               527-759, gnl|rheMac2|chr13 (6957369-6957640)
               

               
               527-759, gnl|rn3|chr6 (44111895-44111614)
               

               
               527-759, gnl|tetNig1|chr10 (6136932-6136667)
               

               
               527-759, gnl|xenTro1|scaffold_86 (1117036-1116758)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-367, gnl|bosTau2|chr11 (70643986-70644351)
               

               
               3-367, gnl|Hg17|chr2 (6968519-6968877)
               

               
               3-367, gnl|Mm7|chr12 (24292251-24291889)
               


               
               527-759, gnl|bosTau2|chr11 (70652686-70652918)
               

               
               527-759, gnl|canFam2|chr17 (7473561-7473830)
               

               
               527-759, gnl|danRer3|chr17 (24730815-24730550)
               

               
               527-759, gnl|dasNov1|scaffold_10914 (52077-51807)
               

               
               527-759, gnl|echTel1|scaffold_282570 (4011-4282)
               

               
               527-759, gnl|fr1|chrUn (76282450-76282187)
               

               
               527-759, gnl|galGal2|chr3 (93285401-93285660)
               

               
               527-759, gnl|hg17|chr2 (6977640-6977911)
               

               
               527-759, gnl|Hg17|chr2 (6977663-6977895)
               

               
               527-759, gnl|mm7|chr12 (24286631-24286348)
               

               
               527-759, gnl|Mm7|chr12 (24286596-24286364)
               

               
               527-759, gnl|monDom2|scaffold_1 (123322537-123322811)
               

               
               527-759, gnl|panTro1|chr12 (7631353-7631624)
               

               
               527-759, gnl|rheMac2|chr13 (6957369-6957640)
               

               
               527-759, gnl|rn3|chr6 (44111895-44111614)
               

               
               527-759, gnl|tetNig1|chr10 (6136932-6136667)
               

               
               527-759, gnl|xenTro1|scaffold_86 (1117036-1116758)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nje (0.16592)
               

               
               cbl (0.114797)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)
               

               
               cbl (0.114797)

	3-367, gnl\|bosTau2\|chr11 (70643986-70644351)
	3-367, gnl\|Hg17\|chr2 (6968519-6968877)
	3-367, gnl\|Mm7\|chr12 (24292251-24291889)

	527-759, gnl\|bosTau2\|chr11 (70652686-70652918)
	527-759, gnl\|canFam2\|chr17 (7473561-7473830)
	527-759, gnl\|danRer3\|chr17 (24730815-24730550)
	527-759, gnl\|dasNov1\|scaffold_10914 (52077-51807)
	527-759, gnl\|echTel1\|scaffold_282570 (4011-4282)
	527-759, gnl\|fr1\|chrUn (76282450-76282187)
	527-759, gnl\|galGal2\|chr3 (93285401-93285660)
	527-759, gnl\|hg17\|chr2 (6977640-6977911)
	527-759, gnl\|Hg17\|chr2 (6977663-6977895)
	527-759, gnl\|mm7\|chr12 (24286631-24286348)
	527-759, gnl\|Mm7\|chr12 (24286596-24286364)
	527-759, gnl\|monDom2\|scaffold_1 (123322537-123322811)
	527-759, gnl\|panTro1\|chr12 (7631353-7631624)
	527-759, gnl\|rheMac2\|chr13 (6957369-6957640)
	527-759, gnl\|rn3\|chr6 (44111895-44111614)
	527-759, gnl\|tetNig1\|chr10 (6136932-6136667)
	527-759, gnl\|xenTro1\|scaffold_86 (1117036-1116758)