Non-Coding RNA Search

Ss1.1-Thy1-THY010007D05.5

Sequence:


               
               TGAGTGCCCTCTCAGGAATGGTCACAGGCGCTCTGTTCTATAAACGGCTAATTTTGTACG
CTTTACAGAGGTGCCTTTGCACTCCTCTCCCCAGATACTCACAGGGGTCTCATCTTTCTC
CTCGACTTAAATCTGAGAGAAGGGAGAAGAGGCTGGCAGGACCCACCAGGAATGAATTTA
ATGGTGAAGTCTGGCCAGAATGTCAGCTCATTCTCCAAACGCCCAGCCATAGGCCTGGAC
AGAGGGGCTGCCCTTTGTCCCTTCCTGCTCTGTCCCCTCCATGCCTGGTCTGGCCCAGGG
GCTCAACAGCCCAGGCCAACCCCCAGGCTCATTTAGGAAACAAGCTTGTGTCCCCTTCTT
ACCGGTGACACCTGAAATGTCCCAAGTTCCATCCAGTGCTTTAAGAAGTATTTTGAATGG
AATTCCCTTTAGGGGCCCAGTACCTTTTCAATCCAGGTAGAAGAAAAGCCAATTTCTTTC
TAAGGTAACTTATTTCTGCCAGGAAATTTTCCAATCCCTCTGGCAGCCCCTACATCACTC
ATGTCCCCAGAGGCATCCAAGGTTCGAGGGCTCCAGGGAACCCAGTAGCATTAAATTGTT
CAGGAGCGTGGGAGATGCAGAGATTTCTTAAAACCAGAGTGACATCCTTTCTCCACGGCT
GTGCTGTGGTCTGAGCAGCGTGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAGTGCCCTCTCAGGAATGGTCACAGGCGCTCTGTTCTATAAACGGCTAATTTTGTACG
CTTTACAGAGGTGCCTTTGCACTCCTCTCCCCAGATACTCACAGGGGTCTCATCTTTCTC
CTCGACTTAAATCTGAGAGAAGGGAGAAGAGGCTGGCAGGACCCACCAGGAATGAATTTA
ATGGTGAAGTCTGGCCAGAATGTCAGCTCATTCTCCAAACGCCCAGCCATAGGCCTGGAC
AGAGGGGCTGCCCTTTGTCCCTTCCTGCTCTGTCCCCTCCATGCCTGGTCTGGCCCAGGG
GCTCAACAGCCCAGGCCAACCCCCAGGCTCATTTAGGAAACAAGCTTGTGTCCCCTTCTT
ACCGGTGACACCTGAAATGTCCCAAGTTCCATCCAGTGCTTTAAGAAGTATTTTGAATGG
AATTCCCTTTAGGGGCCCAGTACCTTTTCAATCCAGGTAGAAGAAAAGCCAATTTCTTTC
TAAGGTAACTTATTTCTGCCAGGAAATTTTCCAATCCCTCTGGCAGCCCCTACATCACTC
ATGTCCCCAGAGGCATCCAAGGTTCGAGGGCTCCAGGGAACCCAGTAGCATTAAATTGTT
CAGGAGCGTGGGAGATGCAGAGATTTCTTAAAACCAGAGTGACATCCTTTCTCCACGGCT
GTGCTGTGGTCTGAGCAGCGTGGC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               227-382, - strand, RNAz p=0.998906
               

               
               423-567, - strand, RNAz p=0.988029

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               227-382, - strand, RNAz p=0.998906
               

               
               423-567, - strand, RNAz p=0.988029

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               275-396, - strand, RNAmicro p=0.999993

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               275-396, - strand, RNAmicro p=0.999993

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               227-684, gnl|bosTau2|chr2 (82641179-82641649)
               

               
               227-684, gnl|Hg17|chr1 (23579544-23578729)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               227-684, gnl|bosTau2|chr2 (82641179-82641649)
               

               
               227-684, gnl|Hg17|chr1 (23579544-23578729)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               csp (0.161186)
               

               
               lnt (0.142308)
               

               
               nbm (0.0993246)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (0.161186)
               

               
               lnt (0.142308)
               

               
               nbm (0.0993246)

	227-382, - strand, RNAz p=0.998906
	423-567, - strand, RNAz p=0.988029

	227-684, gnl\|bosTau2\|chr2 (82641179-82641649)
	227-684, gnl\|Hg17\|chr1 (23579544-23578729)