Ss1.1-Thy1-THY010008A01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGTTTACTGCGCAGATTGGAGGGGCCGTAAGCGGGCGGGCGGGCGGGGCGGGGGGGCAG CACAGAGGTTGGTGGCTCTTGACCCGGAGGCCCCGGCACGTGCCCTCCCGGGGGGCTCGT GGCTTCTTCTCTGGGGGCCGCCCCTTAGCGACCGGCAGTCAGGGTTCCTTCCTTTCCTGC GCTGCGAGAGGGTGAGGCTGGGAGTCCAGGAGCGAGAGGTGGCCGTGGTGGCGGCTGTCG GTGGGTGGCGTGGGTGGACTGGGCGGGCTGTGAGAAGCAGCAGAGCAGAGCTGGGGGCGT CTGGCCAGCCCCGCTCCTAGGCGCGTGGATCCGGAGTGAGGTGGTGCCGCCAGCCTGCCC GTGGTACCAGCGGTCTCCAGAAAGCGAGAAGGGCCACTTAGGGCACGGAGCCTTCGTCCA CAAGCACCTTCTCGTACTTCCCGTGTCCGGCGGCCACGAATTTGTACCTCTTCCCAGATG GGGTGCTCTTAACCGTCGACGAAGTCTTGGGGCCCCCTTTCTGCTCCCAGAGGCTCTTCT TGCTCATGTCTCCAGCAACAATATCCTTGCAGGAGGGGGGCTTGGCGGCGGACTGAGCCT GCACCTCGCCCGTCTCCCACCGGCTCTTGGTGCTCGCCACGGCCATGCTGGGCAGCTCAA TAGACGGCTGGCGGGTCAGCTTGTGGGCCCGGCCAGCAGTCTCGATGGCCTGGGTGTATT GCTCCAGGCGCCCGTCAATCTTGGAGATGGGCAGGGCTGGCTGGGACTTCTTCACACTGT TGCTCTTCTGAATGGAGCGGTGCAGGGACTCGGTTCTGTCGATGAGTTTGGTGCTGGGGC TCAGGGGAGGGGAGCCCGGTGCGGTCCCCTCCAAGACAGAGGGGCTGGGGGTCCGGGGCT GCTGGCATCTCTGGGGCTGCACGTCCCCCTCCTCTGTCTCTGCCAGGCCTGGGCTGCCCT GCACGGGTCCCGCGGGGCCTCTGGGCTCTGAGGCCTCTGATCCCAGCTCTTCCTGAAGCT CTGAGTCGGGGCTCAGGCACAGCTCCTCCAGACACACCCGGGCTGGGCTCCCACAGACGT GCTGGCCGGGCCTGTCCTCCTCCTGCTCCCCTTCCGGACTCTCGCCCTGAAGGGGGTCCC CGCTGTCCGAGGTCTCCCCGGGCCCCCAGGGCTGCCGCCGCTGCTCCGGCTTCTGGGACC AGTCGCCGAAACCTTCATCCTCATCCAGCTCGGGGGCGTCGGGGGGCTTCAGGAGCTTCT CCTGCTCCTGCTGCTCCGGGCCCGGGCCGCCTTCATCCTCGTCCTGGCCCTGAAGCTGCC TGTCCCTCTCGCGCCGGCGCCGCTCCCGGGCGGCCTCCTCCTCATCCTCCAGGCTCCACT GAGCGGCGAGCCCTGAGCCTTCTTCCACCAGCAGCTCCTGCTGCTCCTCAGAGTCGGGGT GGCTGGGCGCCTCCGCCATGGGCTCGGCGTCCGGCGGGCCTCGGCCTTGCGTGTGCACTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGTTTACTGCGCAGATTGGAGGGGCCGTAAGCGGGCGGGCGGGCGGGGCGGGGGGGCAG CACAGAGGTTGGTGGCTCTTGACCCGGAGGCCCCGGCACGTGCCCTCCCGGGGGGCTCGT GGCTTCTTCTCTGGGGGCCGCCCCTTAGCGACCGGCAGTCAGGGTTCCTTCCTTTCCTGC GCTGCGAGAGGGTGAGGCTGGGAGTCCAGGAGCGAGAGGTGGCCGTGGTGGCGGCTGTCG GTGGGTGGCGTGGGTGGACTGGGCGGGCTGTGAGAAGCAGCAGAGCAGAGCTGGGGGCGT CTGGCCAGCCCCGCTCCTAGGCGCGTGGATCCGGAGTGAGGTGGTGCCGCCAGCCTGCCC GTGGTACCAGCGGTCTCCAGAAAGCGAGAAGGGCCACTTAGGGCACGGAGCCTTCGTCCA CAAGCACCTTCTCGTACTTCCCGTGTCCGGCGGCCACGAATTTGTACCTCTTCCCAGATG GGGTGCTCTTAACCGTCGACGAAGTCTTGGGGCCCCCTTTCTGCTCCCAGAGGCTCTTCT TGCTCATGTCTCCAGCAACAATATCCTTGCAGGAGGGGGGCTTGGCGGCGGACTGAGCCT GCACCTCGCCCGTCTCCCACCGGCTCTTGGTGCTCGCCACGGCCATGCTGGGCAGCTCAA TAGACGGCTGGCGGGTCAGCTTGTGGGCCCGGCCAGCAGTCTCGATGGCCTGGGTGTATT GCTCCAGGCGCCCGTCAATCTTGGAGATGGGCAGGGCTGGCTGGGACTTCTTCACACTGT TGCTCTTCTGAATGGAGCGGTGCAGGGACTCGGTTCTGTCGATGAGTTTGGTGCTGGGGC TCAGGGGAGGGGAGCCCGGTGCGGTCCCCTCCAAGACAGAGGGGCTGGGGGTCCGGGGCT GCTGGCATCTCTGGGGCTGCACGTCCCCCTCCTCTGTCTCTGCCAGGCCTGGGCTGCCCT GCACGGGTCCCGCGGGGCCTCTGGGCTCTGAGGCCTCTGATCCCAGCTCTTCCTGAAGCT CTGAGTCGGGGCTCAGGCACAGCTCCTCCAGACACACCCGGGCTGGGCTCCCACAGACGT GCTGGCCGGGCCTGTCCTCCTCCTGCTCCCCTTCCGGACTCTCGCCCTGAAGGGGGTCCC CGCTGTCCGAGGTCTCCCCGGGCCCCCAGGGCTGCCGCCGCTGCTCCGGCTTCTGGGACC AGTCGCCGAAACCTTCATCCTCATCCAGCTCGGGGGCGTCGGGGGGCTTCAGGAGCTTCT CCTGCTCCTGCTGCTCCGGGCCCGGGCCGCCTTCATCCTCGTCCTGGCCCTGAAGCTGCC TGTCCCTCTCGCGCCGGCGCCGCTCCCGGGCGGCCTCCTCCTCATCCTCCAGGCTCCACT GAGCGGCGAGCCCTGAGCCTTCTTCCACCAGCAGCTCCTGCTGCTCCTCAGAGTCGGGGT GGCTGGGCGCCTCCGCCATGGGCTCGGCGTCCGGCGGGCCTCGGCCTTGCGTGTGCACTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 953-1070, - strand, RNAz p=0.710289 | |
| 979-1070, - strand, RNAz p=0.912905 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 953-1070, - strand, RNAz p=0.710289 | |
| 979-1070, - strand, RNAz p=0.912905 |
| Aligned organism(s): 74 entry(ies) | More info |
| Aligned organism(s): 74 entry(ies) | Help | Less info |
| 565-702, gnl|bosTau2|chr29 (44099711-44099574) | |
| 565-702, gnl|canFam2|chr18 (49144682-49145306) | |
| 565-702, gnl|canFam2|chr18 (49144714-49144851) | |
| 565-702, gnl|canFam2|chr18 (49145154-49144682) | |
| 565-702, gnl|canFam2|chr18 (49144714-49144847) | |
| 565-702, gnl|canFam2|chr18 (49144851-49144714) | |
| 565-702, gnl|canFam2|chr18 (49144688-49144799) | |
| 565-702, gnl|canFam2|chr18 (49144714-49144851) | |
| 565-702, gnl|canFam2|chr18 (49144715-49144845) | |
| 565-702, gnl|fr1|chrUn (257059317-257059199) | |
| 565-702, gnl|galGal2|chr5 (11622416-11622300) | |
| 565-702, gnl|hg17|chr1 (145712345-145712992) | |
| 565-702, gnl|hg17|chr11 (1864511-1864623) | |
| 565-702, gnl|Hg17|chr11 (1864673-1864536) | |
| 565-702, gnl|hg17|chr13 (24489541-24489677) | |
| 565-702, gnl|hg17|chr2 (91264942-91265437) | |
| 565-702, gnl|hg17|chr3 (75527029-75527172) | |
| 565-702, gnl|hg17|chr5 (28962681-28962811) | |
| 565-702, gnl|hg17|chr9 (64517892-64518065) | |
| 565-702, gnl|hg17|chr9_random (1097819-1097962) | |
| 565-702, gnl|mm7|chr7 (138917152-138917734) | |
| 565-702, gnl|mm7|chr7 (138917185-138917323) | |
| 565-702, gnl|mm7|chr7 (138917586-138917152) | |
| 565-702, gnl|mm7|chr7 (138917185-138917316) | |
| 565-702, gnl|mm7|chr7 (138917323-138917185) | |
| 565-702, gnl|mm7|chr7 (138917164-138917265) | |
| 565-702, gnl|mm7|chr7 (138917185-138917323) | |
| 565-702, gnl|mm7|chr7 (138917185-138917311) | |
| 565-702, gnl|Mm7|chr7 (138917315-138917178) | |
| 565-702, gnl|oryCun1|scaffold_119024 (4836-4987) | |
| 565-702, gnl|oryCun1|scaffold_99616 (1066-1167) | |
| 565-702, gnl|panTro1|chr11_random (46410080-46410223) | |
| 565-702, gnl|panTro1|chr11_random (46410253-46410080) | |
| 565-702, gnl|panTro1|chr12 (94241364-94240717) | |
| 565-702, gnl|panTro1|chr12 (94240869-94241364) | |
| 565-702, gnl|panTro1|chr14 (23663089-23663225) | |
| 565-702, gnl|panTro1|chr2 (77550705-77550848) | |
| 565-702, gnl|panTro1|chr4_random (28621919-28622049) | |
| 565-702, gnl|panTro1|chr9 (2054601-2054713) | |
| 565-702, gnl|rheMac2|chr14 (1798174-1798809) | |
| 565-702, gnl|rheMac2|chr14 (1798207-1798348) | |
| 565-702, gnl|rheMac2|chr14 (1798657-1798174) | |
| 565-702, gnl|rheMac2|chr14 (1798207-1798343) | |
| 565-702, gnl|rheMac2|chr14 (1798348-1798207) | |
| 565-702, gnl|rheMac2|chr14 (1798180-1798292) | |
| 565-702, gnl|rheMac2|chr14 (1798207-1798348) | |
| 565-702, gnl|rheMac2|chr14 (1798208-1798338) | |
| 565-702, gnl|rn3|chr1 (202896766-202897334) | |
| 565-702, gnl|rn3|chr1 (202896804-202896945) | |
| 565-702, gnl|rn3|chr1 (202897213-202896766) | |
| 565-702, gnl|rn3|chr1 (202896804-202896938) | |
| 565-702, gnl|rn3|chr1 (202896945-202896804) | |
| 565-702, gnl|rn3|chr1 (202896783-202896887) | |
| 565-702, gnl|rn3|chr1 (202896807-202896945) | |
| 565-702, gnl|rn3|chr1 (202896804-202896933) | |
| 917-1070, gnl|bosTau2|chr29 (44096373-44096220) | |
| 917-1070, gnl|canFam2|chr18 (49142259-49142473) | |
| 917-1070, gnl|galGal2|chr5 (11626159-11625967) | |
| 917-1070, gnl|hg17|chr11 (1861192-1861355) | |
| 917-1070, gnl|mm7|chr7 (138915666-138915787) | |
| 917-1070, gnl|rheMac2|chr14 (1794845-1795008) | |
| 917-1070, gnl|rn3|chr1 (202895141-202895262) | |
| 1241-1392, gnl|bosTau2|chr29 (44092757-44092608) | |
| 1241-1392, gnl|canFam2|chr18 (49137139-49137465) | |
| 1241-1392, gnl|dasNov1|scaffold_113754 (4103-4439) | |
| 1241-1392, gnl|hg17|chr11 (1857657-1858061) | |
| 1241-1392, gnl|Hg17|chr11 (1858041-1857892) | |
| 1241-1392, gnl|loxAfr1|scaffold_214365 (375-700) | |
| 1241-1392, gnl|mm7|chr7 (138911570-138911921) | |
| 1241-1392, gnl|Mm7|chr7 (138911927-138911758) | |
| 1241-1392, gnl|monDom2|scaffold_119 (544969-544648) | |
| 1241-1392, gnl|panTro1|chr9 (2047758-2048162) | |
| 1241-1392, gnl|rheMac2|chr14 (1791792-1792193) | |
| 1241-1392, gnl|rn3|chr1 (202890814-202891191) |
| Aligned organism(s): 74 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 565-702, gnl|bosTau2|chr29 (44099711-44099574) | |
| 565-702, gnl|canFam2|chr18 (49144682-49145306) | |
| 565-702, gnl|canFam2|chr18 (49144714-49144851) | |
| 565-702, gnl|canFam2|chr18 (49145154-49144682) | |
| 565-702, gnl|canFam2|chr18 (49144714-49144847) | |
| 565-702, gnl|canFam2|chr18 (49144851-49144714) | |
| 565-702, gnl|canFam2|chr18 (49144688-49144799) | |
| 565-702, gnl|canFam2|chr18 (49144714-49144851) | |
| 565-702, gnl|canFam2|chr18 (49144715-49144845) | |
| 565-702, gnl|fr1|chrUn (257059317-257059199) | |
| 565-702, gnl|galGal2|chr5 (11622416-11622300) | |
| 565-702, gnl|hg17|chr1 (145712345-145712992) | |
| 565-702, gnl|hg17|chr11 (1864511-1864623) | |
| 565-702, gnl|Hg17|chr11 (1864673-1864536) | |
| 565-702, gnl|hg17|chr13 (24489541-24489677) | |
| 565-702, gnl|hg17|chr2 (91264942-91265437) | |
| 565-702, gnl|hg17|chr3 (75527029-75527172) | |
| 565-702, gnl|hg17|chr5 (28962681-28962811) | |
| 565-702, gnl|hg17|chr9 (64517892-64518065) | |
| 565-702, gnl|hg17|chr9_random (1097819-1097962) | |
| 565-702, gnl|mm7|chr7 (138917152-138917734) | |
| 565-702, gnl|mm7|chr7 (138917185-138917323) | |
| 565-702, gnl|mm7|chr7 (138917586-138917152) | |
| 565-702, gnl|mm7|chr7 (138917185-138917316) | |
| 565-702, gnl|mm7|chr7 (138917323-138917185) | |
| 565-702, gnl|mm7|chr7 (138917164-138917265) | |
| 565-702, gnl|mm7|chr7 (138917185-138917323) | |
| 565-702, gnl|mm7|chr7 (138917185-138917311) | |
| 565-702, gnl|Mm7|chr7 (138917315-138917178) | |
| 565-702, gnl|oryCun1|scaffold_119024 (4836-4987) | |
| 565-702, gnl|oryCun1|scaffold_99616 (1066-1167) | |
| 565-702, gnl|panTro1|chr11_random (46410080-46410223) | |
| 565-702, gnl|panTro1|chr11_random (46410253-46410080) | |
| 565-702, gnl|panTro1|chr12 (94241364-94240717) | |
| 565-702, gnl|panTro1|chr12 (94240869-94241364) | |
| 565-702, gnl|panTro1|chr14 (23663089-23663225) | |
| 565-702, gnl|panTro1|chr2 (77550705-77550848) | |
| 565-702, gnl|panTro1|chr4_random (28621919-28622049) | |
| 565-702, gnl|panTro1|chr9 (2054601-2054713) | |
| 565-702, gnl|rheMac2|chr14 (1798174-1798809) | |
| 565-702, gnl|rheMac2|chr14 (1798207-1798348) | |
| 565-702, gnl|rheMac2|chr14 (1798657-1798174) | |
| 565-702, gnl|rheMac2|chr14 (1798207-1798343) | |
| 565-702, gnl|rheMac2|chr14 (1798348-1798207) | |
| 565-702, gnl|rheMac2|chr14 (1798180-1798292) | |
| 565-702, gnl|rheMac2|chr14 (1798207-1798348) | |
| 565-702, gnl|rheMac2|chr14 (1798208-1798338) | |
| 565-702, gnl|rn3|chr1 (202896766-202897334) | |
| 565-702, gnl|rn3|chr1 (202896804-202896945) | |
| 565-702, gnl|rn3|chr1 (202897213-202896766) | |
| 565-702, gnl|rn3|chr1 (202896804-202896938) | |
| 565-702, gnl|rn3|chr1 (202896945-202896804) | |
| 565-702, gnl|rn3|chr1 (202896783-202896887) | |
| 565-702, gnl|rn3|chr1 (202896807-202896945) | |
| 565-702, gnl|rn3|chr1 (202896804-202896933) | |
| 917-1070, gnl|bosTau2|chr29 (44096373-44096220) | |
| 917-1070, gnl|canFam2|chr18 (49142259-49142473) | |
| 917-1070, gnl|galGal2|chr5 (11626159-11625967) | |
| 917-1070, gnl|hg17|chr11 (1861192-1861355) | |
| 917-1070, gnl|mm7|chr7 (138915666-138915787) | |
| 917-1070, gnl|rheMac2|chr14 (1794845-1795008) | |
| 917-1070, gnl|rn3|chr1 (202895141-202895262) | |
| 1241-1392, gnl|bosTau2|chr29 (44092757-44092608) | |
| 1241-1392, gnl|canFam2|chr18 (49137139-49137465) | |
| 1241-1392, gnl|dasNov1|scaffold_113754 (4103-4439) | |
| 1241-1392, gnl|hg17|chr11 (1857657-1858061) | |
| 1241-1392, gnl|Hg17|chr11 (1858041-1857892) | |
| 1241-1392, gnl|loxAfr1|scaffold_214365 (375-700) | |
| 1241-1392, gnl|mm7|chr7 (138911570-138911921) | |
| 1241-1392, gnl|Mm7|chr7 (138911927-138911758) | |
| 1241-1392, gnl|monDom2|scaffold_119 (544969-544648) | |
| 1241-1392, gnl|panTro1|chr9 (2047758-2048162) | |
| 1241-1392, gnl|rheMac2|chr14 (1791792-1792193) | |
| 1241-1392, gnl|rn3|chr1 (202890814-202891191) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| cly (0.965135) | |
| cag (0.755972) | |
| fty (0.703359) | |
| csp (0.644745) | |
| med (0.232504) | |
| col (0.195008) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| cli (0.152812) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| eru (0.120048) | |
| cty (0.10408) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cly (0.965135) | |
| cag (0.755972) | |
| fty (0.703359) | |
| csp (0.644745) | |
| med (0.232504) | |
| col (0.195008) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| cli (0.152812) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| eru (0.120048) | |
| cty (0.10408) |