Non-Coding RNA Search

Ss1.1-Thy1-THY010008A12.5

Sequence:


               
               CGCTGCGGCGGCGTCGCCAAGACGGCGGGCATGGTGGGGCGGGAGAAGGAGCTCTCTATC
CACTTTGTTCCCGGGAACTGCCAGTTAGTGGAGGAGGAAGTTAACATCCCCAGCAGGCGG
GTTCTGATCACTGGTGCCACTGGGCTTCTTGGCAGAGCTGTGTACAAAGAGTTTCAGCAG
AATAATTGGCATGCTGTTGGCTGTGGTTTTAGAAGAGCAAGACCAAAATTTGAACAGGTT
AATCTCTTGGATTCGAATGCAGTTCATCACATTATTTATGATTTTCAGCCCCATGTCATC
GTACATTGTGCAGCAGAGAGAAGGCCAGATGTTGTAGAAAATCAGCCAGATGCTGCTTCT
CAACTTAATGTGGATGCTTCTGGGAATTTAGCAAAGGAAGCAGCTGCAATTGGAGCATTT
CTAATCTACATTAGCACTGATTATGTCTTTGATGGAAAAAACCCACCTTACCGAGAGGAA
GACATGCCAAGTCCCCTAAATCTATATGGCAAAACAAAATTAGAAGGAGAAAAGGCCGTC
CTGGAGAACAATCTAGGAGCTGCTGTTTTGAGAATTCCTGTTCTGTATGGAGAAGTTGAA
AAGCTTGAGGAGAGTGCCGTGACTGTTATGTTTGATAAGGTGCAGTTTAGCAACAAGTCT
GCGAACATGGACCACTGGCAGCAGCGGTTCCCCACACATGTCAAAGATGTGGCCACAGTG
TGTCGTCAGTTAGCAGAGAAGAGAATGCTGGATCCATCAATTAAGGGAACCTTTCACTGG
TCTGGCAACGAACAGATGACCAAGTATGAAATGGCGTGTGCAATTGCAGATGCCTTCAAC
CTCCCTAGCAGTCACTTAAGACCCGTAAGTGTATGGCCTTTAAAACCTTCTTACTCTTTG
GAAGTCTCATTAATAACATTTTTCTTGTTTTTTGGAAGTGTTCGATAATTCCATTTTCTG
GTACTAATCAAAGTGAACTTTGCTTGTATGTTGGCACTTTGTATTGTTAATTTTCTCTGG
AGTATCATATTTAAAGAAGCCCATGAGTATTGGTGAAATTTACAGAAAGAAGTATTGTGT
TTTGTGTGTGTGGGGCTGTACCTACAGCATGCAGAAGTTCTGGGGCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCTGCGGCGGCGTCGCCAAGACGGCGGGCATGGTGGGGCGGGAGAAGGAGCTCTCTATC
CACTTTGTTCCCGGGAACTGCCAGTTAGTGGAGGAGGAAGTTAACATCCCCAGCAGGCGG
GTTCTGATCACTGGTGCCACTGGGCTTCTTGGCAGAGCTGTGTACAAAGAGTTTCAGCAG
AATAATTGGCATGCTGTTGGCTGTGGTTTTAGAAGAGCAAGACCAAAATTTGAACAGGTT
AATCTCTTGGATTCGAATGCAGTTCATCACATTATTTATGATTTTCAGCCCCATGTCATC
GTACATTGTGCAGCAGAGAGAAGGCCAGATGTTGTAGAAAATCAGCCAGATGCTGCTTCT
CAACTTAATGTGGATGCTTCTGGGAATTTAGCAAAGGAAGCAGCTGCAATTGGAGCATTT
CTAATCTACATTAGCACTGATTATGTCTTTGATGGAAAAAACCCACCTTACCGAGAGGAA
GACATGCCAAGTCCCCTAAATCTATATGGCAAAACAAAATTAGAAGGAGAAAAGGCCGTC
CTGGAGAACAATCTAGGAGCTGCTGTTTTGAGAATTCCTGTTCTGTATGGAGAAGTTGAA
AAGCTTGAGGAGAGTGCCGTGACTGTTATGTTTGATAAGGTGCAGTTTAGCAACAAGTCT
GCGAACATGGACCACTGGCAGCAGCGGTTCCCCACACATGTCAAAGATGTGGCCACAGTG
TGTCGTCAGTTAGCAGAGAAGAGAATGCTGGATCCATCAATTAAGGGAACCTTTCACTGG
TCTGGCAACGAACAGATGACCAAGTATGAAATGGCGTGTGCAATTGCAGATGCCTTCAAC
CTCCCTAGCAGTCACTTAAGACCCGTAAGTGTATGGCCTTTAAAACCTTCTTACTCTTTG
GAAGTCTCATTAATAACATTTTTCTTGTTTTTTGGAAGTGTTCGATAATTCCATTTTCTG
GTACTAATCAAAGTGAACTTTGCTTGTATGTTGGCACTTTGTATTGTTAATTTTCTCTGG
AGTATCATATTTAAAGAAGCCCATGAGTATTGGTGAAATTTACAGAAAGAAGTATTGTGT
TTTGTGTGTGTGGGGCTGTACCTACAGCATGCAGAAGTTCTGGGGCCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61824513|ref|XP_582904.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61824513|ref|XP_582904.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               579-698, - strand, RNAz p=0.77549

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               579-698, - strand, RNAz p=0.77549

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-871, gnl|bosTau2|chr5 (54867802-54866933)
               

               
               2-871, gnl|Hg17|chr5 (162871584-162877783)
               

               
               2-871, gnl|Mm7|chr11 (40630654-40623045)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-871, gnl|bosTau2|chr5 (54867802-54866933)
               

               
               2-871, gnl|Hg17|chr5 (162871584-162877783)
               

               
               2-871, gnl|Mm7|chr11 (40630654-40623045)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               cbl (0.45919)
               

               
               nlu (0.191681)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               cty (0.10408)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.45919)
               

               
               nlu (0.191681)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               cty (0.10408)

	2-871, gnl\|bosTau2\|chr5 (54867802-54866933)
	2-871, gnl\|Hg17\|chr5 (162871584-162877783)
	2-871, gnl\|Mm7\|chr11 (40630654-40623045)

	cbl (0.45919)
	nlu (0.191681)
	mcp (0.170648)
	nje (0.16592)
	pla (0.133672)
	cov (0.132153)
	cty (0.10408)