Ss1.1-Thy1-THY010008F02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACAAGTCCACCCCAGCGAGTTACCATGCAGATATCAACCTGCTTTACTGGAGTGACGAGG AGGCCGTGGTGGACTTCAAGTCTGTGCAGGGCCGATGCACCGTCGAGTATGGCGAGGACC TTCCTGAGTGCCTCCAGGACTTCTCAGCTGGTGGCCCCGACCGCTTCTACTTCCTTGAGG CCTATAATGCCAAGAGCAAAAGCTTTGAAGATCCTCCAAATCATGCCCGTAGCCCTGGAA ACAAAGGGAAAGGGAAGGGGAAAGGGAAAAGCAGGACAAAGTCTCAAACATGTGAGCCGA GCGAACTGGAGACAGAAATAAAACTGCCTAAGCTGCGGACCCTGGATGTGTTTTCTGGCT GTGGGGGATTGTCAGAAGGATTCCACCAAGCAGGCATCTCGGAAACGCTGTGGGCCATTG AGATGTGGGACCCTGCAGCCCAGGCCTTCCGGCTAAATAATCCTGGGTCCACGGTGTTCA CGGAGGACTGCAATGTCCTGCTGAAGCTAGTCATGGCCGGGGAGGTGACCAACTCCCGTG GCCAGAAGCTGCCTCAGAAGGGAGATGTGGAGATGCTATGCGGTGGGCCACCCTGCCAAG GCTTTAGCGGCATGAACCGCTTCAATTCTCGTACCTATTCCAAGTTCAAGAACTCCCTAG TGGTCTCCTTCCTCAGCTACTGTGACTACTACCGACCCCGGTACTTCCTCCTGGAGAACG TCAGGAATTTCGTCTCCTTCAAGCGCTCCATGGTCCTGAAGCTCACGCTCCGCTGCCTGG TCCGCATGGGCTACCAGTGCACCTTTGGCGTCTTGCAGGCTGGTCAGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACAAGTCCACCCCAGCGAGTTACCATGCAGATATCAACCTGCTTTACTGGAGTGACGAGG AGGCCGTGGTGGACTTCAAGTCTGTGCAGGGCCGATGCACCGTCGAGTATGGCGAGGACC TTCCTGAGTGCCTCCAGGACTTCTCAGCTGGTGGCCCCGACCGCTTCTACTTCCTTGAGG CCTATAATGCCAAGAGCAAAAGCTTTGAAGATCCTCCAAATCATGCCCGTAGCCCTGGAA ACAAAGGGAAAGGGAAGGGGAAAGGGAAAAGCAGGACAAAGTCTCAAACATGTGAGCCGA GCGAACTGGAGACAGAAATAAAACTGCCTAAGCTGCGGACCCTGGATGTGTTTTCTGGCT GTGGGGGATTGTCAGAAGGATTCCACCAAGCAGGCATCTCGGAAACGCTGTGGGCCATTG AGATGTGGGACCCTGCAGCCCAGGCCTTCCGGCTAAATAATCCTGGGTCCACGGTGTTCA CGGAGGACTGCAATGTCCTGCTGAAGCTAGTCATGGCCGGGGAGGTGACCAACTCCCGTG GCCAGAAGCTGCCTCAGAAGGGAGATGTGGAGATGCTATGCGGTGGGCCACCCTGCCAAG GCTTTAGCGGCATGAACCGCTTCAATTCTCGTACCTATTCCAAGTTCAAGAACTCCCTAG TGGTCTCCTTCCTCAGCTACTGTGACTACTACCGACCCCGGTACTTCCTCCTGGAGAACG TCAGGAATTTCGTCTCCTTCAAGCGCTCCATGGTCCTGAAGCTCACGCTCCGCTGCCTGG TCCGCATGGGCTACCAGTGCACCTTTGGCGTCTTGCAGGCTGGTCAGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 456-615, + strand, RNAz p=0.679778 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 456-615, + strand, RNAz p=0.679778 |
| Predicted microRNA(s): 1 entry(ies) | More info |
| Predicted microRNA(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
| 538-638, - strand, RNAmicro p=0.99189 |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 1-180, gnl|bosTau2|chr7 (9649667-9649846) | |
| 1-180, gnl|canFam2|chr20 (53923758-53923536) | |
| 1-180, gnl|danRer3|chr14 (51522103-51522320) | |
| 1-180, gnl|fr1|chrUn (67813544-67813348) | |
| 1-180, gnl|hg17|chr19 (10113688-10113909) | |
| 1-180, gnl|Hg17|chr19 (10113882-10113703) | |
| 1-180, gnl|loxAfr1|scaffold_22612 (11239-11017) | |
| 1-180, gnl|mm7|chr9 (20790441-20790658) | |
| 1-180, gnl|Mm7|chr9 (20790631-20790452) | |
| 1-180, gnl|monDom2|scaffold_106 (1893347-1893556) | |
| 1-180, gnl|oryCun1|scaffold_205971 (284-505) | |
| 1-180, gnl|panTro1|chr20 (10494862-10495083) | |
| 1-180, gnl|rheMac2|chr19 (9945494-9945715) | |
| 1-180, gnl|tetNig1|chr3 (11557031-11557227) | |
| 1-180, gnl|xenTro1|scaffold_56 (2563047-2563269) | |
| 382-679, gnl|bosTau2|chr7 (9651693-9651990) | |
| 382-679, gnl|canFam2|chr20 (53925292-53924961) | |
| 382-679, gnl|danRer3|chr14 (51520322-51520623) | |
| 382-679, gnl|fr1|chrUn (67814310-67814013) | |
| 382-679, gnl|hg17|chr19 (10111717-10112047) | |
| 382-679, gnl|Hg17|chr19 (10112183-10111719) | |
| 382-679, gnl|loxAfr1|scaffold_22612 (13125-12794) | |
| 382-679, gnl|mm7|chr9 (20788284-20788611) | |
| 382-679, gnl|Mm7|chr9 (20788579-20788286) | |
| 382-679, gnl|monDom2|scaffold_106 (1891098-1891404) | |
| 382-679, gnl|panTro1|chr20 (10492888-10493218) | |
| 382-679, gnl|rheMac2|chr19 (9943515-9943845) | |
| 382-679, gnl|rn3|chr8 (19932512-19932818) | |
| 382-679, gnl|tetNig1|chr3 (11556228-11556535) | |
| 382-679, gnl|xenTro1|scaffold_56 (2561998-2562289) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-180, gnl|bosTau2|chr7 (9649667-9649846) | |
| 1-180, gnl|canFam2|chr20 (53923758-53923536) | |
| 1-180, gnl|danRer3|chr14 (51522103-51522320) | |
| 1-180, gnl|fr1|chrUn (67813544-67813348) | |
| 1-180, gnl|hg17|chr19 (10113688-10113909) | |
| 1-180, gnl|Hg17|chr19 (10113882-10113703) | |
| 1-180, gnl|loxAfr1|scaffold_22612 (11239-11017) | |
| 1-180, gnl|mm7|chr9 (20790441-20790658) | |
| 1-180, gnl|Mm7|chr9 (20790631-20790452) | |
| 1-180, gnl|monDom2|scaffold_106 (1893347-1893556) | |
| 1-180, gnl|oryCun1|scaffold_205971 (284-505) | |
| 1-180, gnl|panTro1|chr20 (10494862-10495083) | |
| 1-180, gnl|rheMac2|chr19 (9945494-9945715) | |
| 1-180, gnl|tetNig1|chr3 (11557031-11557227) | |
| 1-180, gnl|xenTro1|scaffold_56 (2563047-2563269) | |
| 382-679, gnl|bosTau2|chr7 (9651693-9651990) | |
| 382-679, gnl|canFam2|chr20 (53925292-53924961) | |
| 382-679, gnl|danRer3|chr14 (51520322-51520623) | |
| 382-679, gnl|fr1|chrUn (67814310-67814013) | |
| 382-679, gnl|hg17|chr19 (10111717-10112047) | |
| 382-679, gnl|Hg17|chr19 (10112183-10111719) | |
| 382-679, gnl|loxAfr1|scaffold_22612 (13125-12794) | |
| 382-679, gnl|mm7|chr9 (20788284-20788611) | |
| 382-679, gnl|Mm7|chr9 (20788579-20788286) | |
| 382-679, gnl|monDom2|scaffold_106 (1891098-1891404) | |
| 382-679, gnl|panTro1|chr20 (10492888-10493218) | |
| 382-679, gnl|rheMac2|chr19 (9943515-9943845) | |
| 382-679, gnl|rn3|chr8 (19932512-19932818) | |
| 382-679, gnl|tetNig1|chr3 (11556228-11556535) | |
| 382-679, gnl|xenTro1|scaffold_56 (2561998-2562289) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| ute (0.132784) | |
| eru (0.120048) | |
| med (0.116252) | |
| cty (0.10408) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ute (0.132784) | |
| eru (0.120048) | |
| med (0.116252) | |
| cty (0.10408) |