Non-Coding RNA Search

Ss1.1-Thy1-THY010008F09.5

Sequence:


               
               TTTATACAGCTTTTTTAGAGACACCAAGCCATGGTGCATAACTGAGAAACCCGTCAGTCC
TTGTGTTTAGAAAGGTCATCAGCGTGTTTTCGCCTCTTCATCGAGTGTGTGCAGTTACAC
ATCTGTCCGTGGATAAACTTATTACATGTTCATTGTCGGGCTCAGCATCTCCTATGAACT
CATTCCCAGGGAGGAAAACCAAAAGGGAAACTTCTGATTCCTCTCCTTCCATCAGATGTG
GGGAGAGATGGTTGGATTCCTTGTGGAATGCAGGTGTGTGTGGCTGATTGTTGGCAGTCG
TGCTCTGACTTGACATGAGGAGCTCTACATCCACCCTTCTGTGGGGACCAGTGTCTGAGA
TGAACCCTGGGAAGCAGGCAGGTGGGTCAGCGTGGAGAATAAGAGCGGCCCTGCCTGGCC
TGGGAAGAGGGACTGGTGGCACCAGGAAGAGCAGCGGCAGCCCTGCTCCCCTTCCACCTC
GAAGAGGAGGTGCCAGAAGCTGCCGCCTCACCTGAGCTCCAGCTTAAGTGGACTTGGCTT
CCTTCGGGGCCTGTCTCTGACACGGCGGCGGGAGCCCTGCCTCTCCACTGCCAGGTGGAA
TCTGGAATCTCTCATCTACCTCTTAGTCTATCAGTTTCTACGTGTGAGAAGCAAGCTTGT
GGGCCAGTGTCCTCGTACATGCTGTAGCACTTAAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTATACAGCTTTTTTAGAGACACCAAGCCATGGTGCATAACTGAGAAACCCGTCAGTCC
TTGTGTTTAGAAAGGTCATCAGCGTGTTTTCGCCTCTTCATCGAGTGTGTGCAGTTACAC
ATCTGTCCGTGGATAAACTTATTACATGTTCATTGTCGGGCTCAGCATCTCCTATGAACT
CATTCCCAGGGAGGAAAACCAAAAGGGAAACTTCTGATTCCTCTCCTTCCATCAGATGTG
GGGAGAGATGGTTGGATTCCTTGTGGAATGCAGGTGTGTGTGGCTGATTGTTGGCAGTCG
TGCTCTGACTTGACATGAGGAGCTCTACATCCACCCTTCTGTGGGGACCAGTGTCTGAGA
TGAACCCTGGGAAGCAGGCAGGTGGGTCAGCGTGGAGAATAAGAGCGGCCCTGCCTGGCC
TGGGAAGAGGGACTGGTGGCACCAGGAAGAGCAGCGGCAGCCCTGCTCCCCTTCCACCTC
GAAGAGGAGGTGCCAGAAGCTGCCGCCTCACCTGAGCTCCAGCTTAAGTGGACTTGGCTT
CCTTCGGGGCCTGTCTCTGACACGGCGGCGGGAGCCCTGCCTCTCCACTGCCAGGTGGAA
TCTGGAATCTCTCATCTACCTCTTAGTCTATCAGTTTCTACGTGTGAGAAGCAAGCTTGT
GGGCCAGTGTCCTCGTACATGCTGTAGCACTTAAGA

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-694, gnl|bosTau2|chr8 (30065036-30065722)
               

               
               1-694, gnl|canFam2|chr11 (56789400-56789972)
               

               
               1-694, gnl|dasNov1|scaffold_1773 (74965-74417)
               

               
               1-694, gnl|echTel1|scaffold_312098 (194779-195258)
               

               
               1-694, gnl|hg17|chr9 (37428311-37428867)
               

               
               1-694, gnl|Hg17|chr9 (37429080-37428362)
               

               
               1-694, gnl|loxAfr1|scaffold_41198 (15974-15419)
               

               
               1-694, gnl|mm7|chr4 (45005239-45005729)
               

               
               1-694, gnl|Mm7|chr4 (45005928-45005289)
               

               
               1-694, gnl|oryCun1|scaffold_175414 (53939-54424)
               

               
               1-694, gnl|panTro1|chr11 (38044500-38045056)
               

               
               1-694, gnl|rheMac2|chr15 (39995992-39995435)
               

               
               1-694, gnl|rn3|chr5 (61546859-61547339)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-694, gnl|bosTau2|chr8 (30065036-30065722)
               

               
               1-694, gnl|canFam2|chr11 (56789400-56789972)
               

               
               1-694, gnl|dasNov1|scaffold_1773 (74965-74417)
               

               
               1-694, gnl|echTel1|scaffold_312098 (194779-195258)
               

               
               1-694, gnl|hg17|chr9 (37428311-37428867)
               

               
               1-694, gnl|Hg17|chr9 (37429080-37428362)
               

               
               1-694, gnl|loxAfr1|scaffold_41198 (15974-15419)
               

               
               1-694, gnl|mm7|chr4 (45005239-45005729)
               

               
               1-694, gnl|Mm7|chr4 (45005928-45005289)
               

               
               1-694, gnl|oryCun1|scaffold_175414 (53939-54424)
               

               
               1-694, gnl|panTro1|chr11 (38044500-38045056)
               

               
               1-694, gnl|rheMac2|chr15 (39995992-39995435)
               

               
               1-694, gnl|rn3|chr5 (61546859-61547339)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               ece (0.229305)
               

               
               med (0.116252)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               med (0.116252)

	1-694, gnl\|bosTau2\|chr8 (30065036-30065722)
	1-694, gnl\|canFam2\|chr11 (56789400-56789972)
	1-694, gnl\|dasNov1\|scaffold_1773 (74965-74417)
	1-694, gnl\|echTel1\|scaffold_312098 (194779-195258)
	1-694, gnl\|hg17\|chr9 (37428311-37428867)
	1-694, gnl\|Hg17\|chr9 (37429080-37428362)
	1-694, gnl\|loxAfr1\|scaffold_41198 (15974-15419)
	1-694, gnl\|mm7\|chr4 (45005239-45005729)
	1-694, gnl\|Mm7\|chr4 (45005928-45005289)
	1-694, gnl\|oryCun1\|scaffold_175414 (53939-54424)
	1-694, gnl\|panTro1\|chr11 (38044500-38045056)
	1-694, gnl\|rheMac2\|chr15 (39995992-39995435)
	1-694, gnl\|rn3\|chr5 (61546859-61547339)