Ss1.1-Thy1-THY010008H01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTCTGTCGGAGTCTGTCCTCGGAGCAGGAGGGGCGAAGCGACTTCGGAGAGCTAGCTGCC GGACTCGATTATTCTCTTTCCCCTCCTCTCTCCCGTCCCACAGCTCTCTTCACCCCTCTC CCTCCCTTGCTCGCGCAGCCATGGCGGAGCTGTCGGCGGCCACTCAGTCCCCGTCCGTCT CGTCGTCCTCCGGGGCCGAGTCCTCTGCGCCCGGTGGCGGCGGTGGGAGCCCGGGAGCCT GCCCCGCCCTGGGGGCGAAGAGCTGCGGCTCCTCCTGTGCGGTGCACGACTTGATTTTCT GGCGAGATGTGAAGAAGACTGGGTTTGTCTTTGGCACCACACTGATCATGCTGCTTTCCC TGGCAGCTTTCAGTGTCATCAGTGTGGTTTCTTACCTCATCCTTGCTCTTCTGTCTGTCA CCATCAGCTTCAGAGTCTACAAGTCTGTCATCCAAGCTGTACAGAAGTCAGAAGAAGGCC ATCCATTCAAAGCCTACCTGGATGTAGACATCACTCTGTCCTCAGAAGCTTTCCATAATT ATGTGAATGCTGCCATGGTGCACATCAACAAGGCCCTGAAACTCATCATTCGTCTCTTCC TGGTGGAAGATCTAGTTGACTCCTTGAAGCTGGCTGTCTTCATGTGGCTGATGACCTATG TTGGTGCCGTTTTCAATGGGATCACCCTTCTGATTCTTGCCGAACTGCTCATTTTCAGTG TTCCAGTCGTCTATGAGAAGTACAAGACCCAGATTGATCACTATGTTGGCATCGCTCGGG ATCAGACCAAGTCCATTGTTGAAAAGATCCAAGCAAAAGTCCCTGGAATCGCAAAGAAAA AGGCAGAATAAGTACATGGACACCGGAGATGCAACAGTTACTAAAACACCATTTAATAGT TATAATGTTGTTACTTGTACTATGAAGGAACGTGCTCAGTGTCAGCTTGAGCCTGCATTC CAAGCTTTTTTTTTTTTTAATTTGGTGTTTTCTCCCCACCTTTCCCTTTATCCTCAGTAT CAAGCACAAGAATGATTGGACTAAAAAAAGAACTGATATCTTAGAACCCGAAAGAATAAA GAAAGGATCAAATTAATAGGATAAATCAGTACCTTAAGGGTGGTGGAGCTTTTACCTATA GCTTGAAAGGAGGGGAAAGATTGGAAGTAAGGAGAAAATGAAAAATGAACACATCTCTTG GATTCTTCTATCCAAGTTTCAAGGAATAGTTTTACACAGCTTCCCATCATAGTTTTGCCC TTATTTTTAAGTTAAGAAATAATGATTAATTTATGAAGAAATTATCTGGGACAAAAGTGG GATTCCTTCCCTTGGTTTTTTGTGTTTCGGGGGGTTTTGTTTCAGTGTTGTTTTTTTTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTCTGTCGGAGTCTGTCCTCGGAGCAGGAGGGGCGAAGCGACTTCGGAGAGCTAGCTGCC GGACTCGATTATTCTCTTTCCCCTCCTCTCTCCCGTCCCACAGCTCTCTTCACCCCTCTC CCTCCCTTGCTCGCGCAGCCATGGCGGAGCTGTCGGCGGCCACTCAGTCCCCGTCCGTCT CGTCGTCCTCCGGGGCCGAGTCCTCTGCGCCCGGTGGCGGCGGTGGGAGCCCGGGAGCCT GCCCCGCCCTGGGGGCGAAGAGCTGCGGCTCCTCCTGTGCGGTGCACGACTTGATTTTCT GGCGAGATGTGAAGAAGACTGGGTTTGTCTTTGGCACCACACTGATCATGCTGCTTTCCC TGGCAGCTTTCAGTGTCATCAGTGTGGTTTCTTACCTCATCCTTGCTCTTCTGTCTGTCA CCATCAGCTTCAGAGTCTACAAGTCTGTCATCCAAGCTGTACAGAAGTCAGAAGAAGGCC ATCCATTCAAAGCCTACCTGGATGTAGACATCACTCTGTCCTCAGAAGCTTTCCATAATT ATGTGAATGCTGCCATGGTGCACATCAACAAGGCCCTGAAACTCATCATTCGTCTCTTCC TGGTGGAAGATCTAGTTGACTCCTTGAAGCTGGCTGTCTTCATGTGGCTGATGACCTATG TTGGTGCCGTTTTCAATGGGATCACCCTTCTGATTCTTGCCGAACTGCTCATTTTCAGTG TTCCAGTCGTCTATGAGAAGTACAAGACCCAGATTGATCACTATGTTGGCATCGCTCGGG ATCAGACCAAGTCCATTGTTGAAAAGATCCAAGCAAAAGTCCCTGGAATCGCAAAGAAAA AGGCAGAATAAGTACATGGACACCGGAGATGCAACAGTTACTAAAACACCATTTAATAGT TATAATGTTGTTACTTGTACTATGAAGGAACGTGCTCAGTGTCAGCTTGAGCCTGCATTC CAAGCTTTTTTTTTTTTTAATTTGGTGTTTTCTCCCCACCTTTCCCTTTATCCTCAGTAT CAAGCACAAGAATGATTGGACTAAAAAAAGAACTGATATCTTAGAACCCGAAAGAATAAA GAAAGGATCAAATTAATAGGATAAATCAGTACCTTAAGGGTGGTGGAGCTTTTACCTATA GCTTGAAAGGAGGGGAAAGATTGGAAGTAAGGAGAAAATGAAAAATGAACACATCTCTTG GATTCTTCTATCCAAGTTTCAAGGAATAGTTTTACACAGCTTCCCATCATAGTTTTGCCC TTATTTTTAAGTTAAGAAATAATGATTAATTTATGAAGAAATTATCTGGGACAAAAGTGG GATTCCTTCCCTTGGTTTTTTGTGTTTCGGGGGGTTTTGTTTCAGTGTTGTTTTTTTTTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 911-1027, - strand, RNAz p=0.910464 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 911-1027, - strand, RNAz p=0.910464 |
| Aligned organism(s): 55 entry(ies) | More info |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
| 1-282, gnl|bosTau2|chr29 (35012369-35012089) | |
| 1-282, gnl|Hg17|chr11 (63205549-63205826) | |
| 1-282, gnl|Mm7|chr19 (7303079-7302800) | |
| 288-490, gnl|bosTau2|chr10 (48853157-48852955) | |
| 288-490, gnl|canFam2|chr8 (37849255-37849505) | |
| 288-490, gnl|danRer3|chr20 (23131430-23131659) | |
| 288-490, gnl|dasNov1|scaffold_5037 (50874-50628) | |
| 288-490, gnl|echTel1|scaffold_316658 (47012-46774) | |
| 288-490, gnl|fr1|chrUn (69783576-69783347) | |
| 288-490, gnl|galGal2|chr5 (51511796-51511574) | |
| 288-490, gnl|hg17|chr14 (59143751-59143992) | |
| 288-490, gnl|Hg17|chr14 (59143958-59143756) | |
| 288-490, gnl|loxAfr1|scaffold_5382 (79940-79696) | |
| 288-490, gnl|mm7|chr12 (70172948-70173188) | |
| 288-490, gnl|Mm7|chr12 (70173155-70172953) | |
| 288-490, gnl|monDom2|scaffold_8 (72055913-72056147) | |
| 288-490, gnl|oryCun1|scaffold_139330 (8596-8388) | |
| 288-490, gnl|panTro1|chr15 (58713297-58713538) | |
| 288-490, gnl|rheMac2|chr7 (122620037-122620281) | |
| 288-490, gnl|rn3|chr6 (94415537-94415783) | |
| 288-490, gnl|tetNig1|chr10 (5521058-5521281) | |
| 288-490, gnl|xenTro1|scaffold_33 (657777-657544) | |
| 491-629, gnl|bosTau2|chr29 (34951182-34951044) | |
| 491-629, gnl|canFam2|chr18 (56275057-56274968) | |
| 491-629, gnl|danRer3|chr20 (23131400-23131257) | |
| 491-629, gnl|dasNov1|scaffold_21147 (17074-17141) | |
| 491-629, gnl|echTel1|scaffold_174754 (1809-1720) | |
| 491-629, gnl|fr1|chrUn (69783584-69783731) | |
| 491-629, gnl|galGal2|chr5 (51512905-51512994) | |
| 491-629, gnl|Hg17|chr11 (63276555-63276693) | |
| 491-629, gnl|hg17|chr4 (146654651-146654740) | |
| 491-629, gnl|loxAfr1|scaffold_4338 (73622-73567) | |
| 491-629, gnl|mm7|chr19 (7252452-7252363) | |
| 491-629, gnl|Mm7|chr19 (7252451-7252313) | |
| 491-629, gnl|monDom2|scaffold_150 (1781814-1781903) | |
| 491-629, gnl|oryCun1|scaffold_104789 (9029-8940) | |
| 491-629, gnl|panTro1|chr3 (163904767-163904856) | |
| 491-629, gnl|rheMac2|chr14 (10703412-10703323) | |
| 491-629, gnl|rn3|chr1 (210274496-210274407) | |
| 491-629, gnl|tetNig1|chrUn_random (72430790-72430645) | |
| 491-629, gnl|xenTro1|scaffold_234 (861505-861594) | |
| 806-1347, gnl|bosTau2|chr29 (34947872-34947326) | |
| 806-1347, gnl|canFam2|chr18 (56269951-56269224) | |
| 806-1347, gnl|dasNov1|scaffold_113597 (4466-5198) | |
| 806-1347, gnl|echTel1|scaffold_311331 (47045-47735) | |
| 806-1347, gnl|Hg17|chr11 (63282204-63282711) | |
| 806-1347, gnl|hg17|chr4 (146654967-146655696) | |
| 806-1347, gnl|loxAfr1|scaffold_1022 (13546-12808) | |
| 806-1347, gnl|mm7|chr19 (7247736-7247056) | |
| 806-1347, gnl|Mm7|chr19 (7247736-7247231) | |
| 806-1347, gnl|monDom2|scaffold_150 (1785657-1786440) | |
| 806-1347, gnl|oryCun1|scaffold_204661 (4270-3647) | |
| 806-1347, gnl|panTro1|chr3 (163905083-163905808) | |
| 806-1347, gnl|rheMac2|chr14 (10697383-10696635) | |
| 806-1347, gnl|rn3|chr1 (210269905-210269249) |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-282, gnl|bosTau2|chr29 (35012369-35012089) | |
| 1-282, gnl|Hg17|chr11 (63205549-63205826) | |
| 1-282, gnl|Mm7|chr19 (7303079-7302800) | |
| 288-490, gnl|bosTau2|chr10 (48853157-48852955) | |
| 288-490, gnl|canFam2|chr8 (37849255-37849505) | |
| 288-490, gnl|danRer3|chr20 (23131430-23131659) | |
| 288-490, gnl|dasNov1|scaffold_5037 (50874-50628) | |
| 288-490, gnl|echTel1|scaffold_316658 (47012-46774) | |
| 288-490, gnl|fr1|chrUn (69783576-69783347) | |
| 288-490, gnl|galGal2|chr5 (51511796-51511574) | |
| 288-490, gnl|hg17|chr14 (59143751-59143992) | |
| 288-490, gnl|Hg17|chr14 (59143958-59143756) | |
| 288-490, gnl|loxAfr1|scaffold_5382 (79940-79696) | |
| 288-490, gnl|mm7|chr12 (70172948-70173188) | |
| 288-490, gnl|Mm7|chr12 (70173155-70172953) | |
| 288-490, gnl|monDom2|scaffold_8 (72055913-72056147) | |
| 288-490, gnl|oryCun1|scaffold_139330 (8596-8388) | |
| 288-490, gnl|panTro1|chr15 (58713297-58713538) | |
| 288-490, gnl|rheMac2|chr7 (122620037-122620281) | |
| 288-490, gnl|rn3|chr6 (94415537-94415783) | |
| 288-490, gnl|tetNig1|chr10 (5521058-5521281) | |
| 288-490, gnl|xenTro1|scaffold_33 (657777-657544) | |
| 491-629, gnl|bosTau2|chr29 (34951182-34951044) | |
| 491-629, gnl|canFam2|chr18 (56275057-56274968) | |
| 491-629, gnl|danRer3|chr20 (23131400-23131257) | |
| 491-629, gnl|dasNov1|scaffold_21147 (17074-17141) | |
| 491-629, gnl|echTel1|scaffold_174754 (1809-1720) | |
| 491-629, gnl|fr1|chrUn (69783584-69783731) | |
| 491-629, gnl|galGal2|chr5 (51512905-51512994) | |
| 491-629, gnl|Hg17|chr11 (63276555-63276693) | |
| 491-629, gnl|hg17|chr4 (146654651-146654740) | |
| 491-629, gnl|loxAfr1|scaffold_4338 (73622-73567) | |
| 491-629, gnl|mm7|chr19 (7252452-7252363) | |
| 491-629, gnl|Mm7|chr19 (7252451-7252313) | |
| 491-629, gnl|monDom2|scaffold_150 (1781814-1781903) | |
| 491-629, gnl|oryCun1|scaffold_104789 (9029-8940) | |
| 491-629, gnl|panTro1|chr3 (163904767-163904856) | |
| 491-629, gnl|rheMac2|chr14 (10703412-10703323) | |
| 491-629, gnl|rn3|chr1 (210274496-210274407) | |
| 491-629, gnl|tetNig1|chrUn_random (72430790-72430645) | |
| 491-629, gnl|xenTro1|scaffold_234 (861505-861594) | |
| 806-1347, gnl|bosTau2|chr29 (34947872-34947326) | |
| 806-1347, gnl|canFam2|chr18 (56269951-56269224) | |
| 806-1347, gnl|dasNov1|scaffold_113597 (4466-5198) | |
| 806-1347, gnl|echTel1|scaffold_311331 (47045-47735) | |
| 806-1347, gnl|Hg17|chr11 (63282204-63282711) | |
| 806-1347, gnl|hg17|chr4 (146654967-146655696) | |
| 806-1347, gnl|loxAfr1|scaffold_1022 (13546-12808) | |
| 806-1347, gnl|mm7|chr19 (7247736-7247056) | |
| 806-1347, gnl|Mm7|chr19 (7247736-7247231) | |
| 806-1347, gnl|monDom2|scaffold_150 (1785657-1786440) | |
| 806-1347, gnl|oryCun1|scaffold_204661 (4270-3647) | |
| 806-1347, gnl|panTro1|chr3 (163905083-163905808) | |
| 806-1347, gnl|rheMac2|chr14 (10697383-10696635) | |
| 806-1347, gnl|rn3|chr1 (210269905-210269249) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| ecc (0.345105) | |
| nco (0.323468) | |
| cga (0.279096) | |
| ece (0.229305) | |
| cty (0.20816) | |
| nep (0.183925) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| csp (0.161186) | |
| fat (0.147427) | |
| lnt (0.142308) | |
| ute (0.132784) | |
| ebs (0.118301) | |
| jca (0.11396) | |
| ldo (0.0970026) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ecc (0.345105) | |
| nco (0.323468) | |
| cga (0.279096) | |
| ece (0.229305) | |
| cty (0.20816) | |
| nep (0.183925) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| csp (0.161186) | |
| fat (0.147427) | |
| lnt (0.142308) | |
| ute (0.132784) | |
| ebs (0.118301) | |
| jca (0.11396) | |
| ldo (0.0970026) |