Ss1.1-Thy1-THY010008H07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTATCCTCCTTATTGACAAACAGAGCGGCCGCGGCGGCGACTCTCGGCGTGCGTTTGTG GCCAAGCCATGGGAGACAAGAAGAGCCCTACCAGGCCGAAGCGGCAGCCGAAGCCGTCCT CGGATGAGGGTTACTGGGACTGTAGCGTCTGCACCTTCCGGAACAGCGCCGAGGCCTTCA AGTGCATGATGTGCGATGTGCGGAAGGGCACCTCCACCCGGAAACCTCGACCTGTCTCCC AGTTGGTTGCACAGCAGGTTACTCAGCAGTTTGTGCCCCCTACACAGTCAAAGAAAGAGA AAAAAGATAAAGTAGACAAAGAAAAAAGTGAAAAGGAAACAACTAGCAAAAAGAACAGTC ATAAGAAAACCAGACCAAGATTGAAAAATGTGGATCGGAGTAGTGCTCAACATTTGGAGG TTACTGTTGGCGACCTGACAGTCATTATTACAGACTTTAAGGAGAAAACAAAGTCACCGC CTGCATCCAGTGCTGCCTCTGCAGATCAGCACAGTCAGAGTGGCTCTAGCTCTGATAACA CAGAGAGGGGAATGTCCAGGTCATCTTCACCCAGAGGAGAAGCCTCATCATTGAATGGAG AATCTCATTAAAGTTTATTTTCTCCAGTTTCTTAGTCACCTCTGTCGTACCATGCAGATA GACAGATTATGCCAAGAAGTACCACATTTTCATGACAAACGTATTCATGCACAATCCATA ATTTGTGTTTTACATAAAATAGAAATTTGTTAGATTTTATTGCAATCTCTGCCTACCAAA CATTTCCAGTCTTAACATTTTGGTCTCCGCAGTTAAAGATGCCATGAAAATGTGGTTGAA TTATTCATTATGCAGTGTTATTGGTAAGTCTGTTTTCACTTTTAGTTTAGTGAATTCTAA CACATAATTCTTGAATTCTCTACTATTGGCATGTAACGAATTTAAATTTTTATAACATAG TGCAAGCTGCCTAAATATGTATTATTTGAGAATTGTGAAACAGATAGTTATATGTATACA AGTCAAAGATCAACTTAATCAAACTATTGCTGCAACAGGATTTTCTTAATGGCTATCCTC TTAAATACACCTGCTGGTACTTGGTGTGGTTAAATAGGAAAATTGTTATTAAATAAAGAA TTTGTATGAACCATTGCCAATGTTTTTGACACATTTTACTAAATTATTGTTCCTGAATTA TGTTTTTGGTTTTCTATTTTGGGTTTTTGTTTTTTTTTTTTGCTTATATTACAAAACATT CATTTATTGTAATGTTTACTAGCAGACTAGTGAACAGTAAAACAATTAGCTTTATAGTTC AGGTTTAGTGCTATTGTCATGAAACACTGGTATTTTCTGTATTATATAGAACATTAAAAT TCAAATAGTAGTTATAAGCATTTGGCAAAAACAGAAAAGAAAAGAAACCTGCCGTATTTT AAAAGCTGCAATTTTGGTAAAGCTTTAACTTAATAATAGTTTTATCACTGTTTCCTTGCC CCGAACTTATCCAGGGTCATAGAAGTATGAATCTAATTAATAGAGAAATAGGAACTGTTG CACAGAACTGGGAAATAACTAATCTTAAATCAGTTTAATTGGCCTCTTAAATACAACAAT TCTTATAAAAGTTAGAGTGTACTATTTTCAGAAACAATTGCCAGTTTATGCATTTATCAA TATCCTGAACTTTAAAAAAATATTTACAGCCCCACTTACTATTATGTAAATTTACCAATA AAATATTTTTAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTATCCTCCTTATTGACAAACAGAGCGGCCGCGGCGGCGACTCTCGGCGTGCGTTTGTG GCCAAGCCATGGGAGACAAGAAGAGCCCTACCAGGCCGAAGCGGCAGCCGAAGCCGTCCT CGGATGAGGGTTACTGGGACTGTAGCGTCTGCACCTTCCGGAACAGCGCCGAGGCCTTCA AGTGCATGATGTGCGATGTGCGGAAGGGCACCTCCACCCGGAAACCTCGACCTGTCTCCC AGTTGGTTGCACAGCAGGTTACTCAGCAGTTTGTGCCCCCTACACAGTCAAAGAAAGAGA AAAAAGATAAAGTAGACAAAGAAAAAAGTGAAAAGGAAACAACTAGCAAAAAGAACAGTC ATAAGAAAACCAGACCAAGATTGAAAAATGTGGATCGGAGTAGTGCTCAACATTTGGAGG TTACTGTTGGCGACCTGACAGTCATTATTACAGACTTTAAGGAGAAAACAAAGTCACCGC CTGCATCCAGTGCTGCCTCTGCAGATCAGCACAGTCAGAGTGGCTCTAGCTCTGATAACA CAGAGAGGGGAATGTCCAGGTCATCTTCACCCAGAGGAGAAGCCTCATCATTGAATGGAG AATCTCATTAAAGTTTATTTTCTCCAGTTTCTTAGTCACCTCTGTCGTACCATGCAGATA GACAGATTATGCCAAGAAGTACCACATTTTCATGACAAACGTATTCATGCACAATCCATA ATTTGTGTTTTACATAAAATAGAAATTTGTTAGATTTTATTGCAATCTCTGCCTACCAAA CATTTCCAGTCTTAACATTTTGGTCTCCGCAGTTAAAGATGCCATGAAAATGTGGTTGAA TTATTCATTATGCAGTGTTATTGGTAAGTCTGTTTTCACTTTTAGTTTAGTGAATTCTAA CACATAATTCTTGAATTCTCTACTATTGGCATGTAACGAATTTAAATTTTTATAACATAG TGCAAGCTGCCTAAATATGTATTATTTGAGAATTGTGAAACAGATAGTTATATGTATACA AGTCAAAGATCAACTTAATCAAACTATTGCTGCAACAGGATTTTCTTAATGGCTATCCTC TTAAATACACCTGCTGGTACTTGGTGTGGTTAAATAGGAAAATTGTTATTAAATAAAGAA TTTGTATGAACCATTGCCAATGTTTTTGACACATTTTACTAAATTATTGTTCCTGAATTA TGTTTTTGGTTTTCTATTTTGGGTTTTTGTTTTTTTTTTTTGCTTATATTACAAAACATT CATTTATTGTAATGTTTACTAGCAGACTAGTGAACAGTAAAACAATTAGCTTTATAGTTC AGGTTTAGTGCTATTGTCATGAAACACTGGTATTTTCTGTATTATATAGAACATTAAAAT TCAAATAGTAGTTATAAGCATTTGGCAAAAACAGAAAAGAAAAGAAACCTGCCGTATTTT AAAAGCTGCAATTTTGGTAAAGCTTTAACTTAATAATAGTTTTATCACTGTTTCCTTGCC CCGAACTTATCCAGGGTCATAGAAGTATGAATCTAATTAATAGAGAAATAGGAACTGTTG CACAGAACTGGGAAATAACTAATCTTAAATCAGTTTAATTGGCCTCTTAAATACAACAAT TCTTATAAAAGTTAGAGTGTACTATTTTCAGAAACAATTGCCAGTTTATGCATTTATCAA TATCCTGAACTTTAAAAAAATATTTACAGCCCCACTTACTATTATGTAAATTTACCAATA AAATATTTTTAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1235-1347, - strand, RNAz p=0.508586 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1235-1347, - strand, RNAz p=0.508586 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 92-221, gnl|bosTau2|chr5 (27505229-27505358) | |
| 92-221, gnl|canFam2|chr27 (14687677-14687499) | |
| 92-221, gnl|danRer3|chr4 (11243186-11243000) | |
| 92-221, gnl|dasNov1|scaffold_43968 (11343-11515) | |
| 92-221, gnl|echTel1|scaffold_108968 (118-7) | |
| 92-221, gnl|fr1|chrUn (119465115-119465311) | |
| 92-221, gnl|galGal2|chr1 (26455632-26455782) | |
| 92-221, gnl|hg17|chr12 (40917663-40917841) | |
| 92-221, gnl|Hg17|chr12 (40917796-40917667) | |
| 92-221, gnl|loxAfr1|scaffold_7296 (61635-61768) | |
| 92-221, gnl|mm7|chr15 (93416703-93416880) | |
| 92-221, gnl|Mm7|chr15 (93416836-93416707) | |
| 92-221, gnl|monDom2|scaffold_133 (487910-487731) | |
| 92-221, gnl|oryCun1|scaffold_111043 (4270-4094) | |
| 92-221, gnl|panTro1|chr10 (41512394-41512572) | |
| 92-221, gnl|rheMac2|chr11 (39158194-39158372) | |
| 92-221, gnl|rn3|chr7 (131901691-131901868) | |
| 92-221, gnl|tetNig1|chr19 (4021343-4021145) | |
| 92-221, gnl|xenTro1|scaffold_66 (1233107-1233289) | |
| 372-1605, gnl|bosTau2|chr5 (27582986-27584215) | |
| 372-1605, gnl|Hg17|chr12 (40840897-40839662) | |
| 372-1605, gnl|Mm7|chr15 (93365992-93364800) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 92-221, gnl|bosTau2|chr5 (27505229-27505358) | |
| 92-221, gnl|canFam2|chr27 (14687677-14687499) | |
| 92-221, gnl|danRer3|chr4 (11243186-11243000) | |
| 92-221, gnl|dasNov1|scaffold_43968 (11343-11515) | |
| 92-221, gnl|echTel1|scaffold_108968 (118-7) | |
| 92-221, gnl|fr1|chrUn (119465115-119465311) | |
| 92-221, gnl|galGal2|chr1 (26455632-26455782) | |
| 92-221, gnl|hg17|chr12 (40917663-40917841) | |
| 92-221, gnl|Hg17|chr12 (40917796-40917667) | |
| 92-221, gnl|loxAfr1|scaffold_7296 (61635-61768) | |
| 92-221, gnl|mm7|chr15 (93416703-93416880) | |
| 92-221, gnl|Mm7|chr15 (93416836-93416707) | |
| 92-221, gnl|monDom2|scaffold_133 (487910-487731) | |
| 92-221, gnl|oryCun1|scaffold_111043 (4270-4094) | |
| 92-221, gnl|panTro1|chr10 (41512394-41512572) | |
| 92-221, gnl|rheMac2|chr11 (39158194-39158372) | |
| 92-221, gnl|rn3|chr7 (131901691-131901868) | |
| 92-221, gnl|tetNig1|chr19 (4021343-4021145) | |
| 92-221, gnl|xenTro1|scaffold_66 (1233107-1233289) | |
| 372-1605, gnl|bosTau2|chr5 (27582986-27584215) | |
| 372-1605, gnl|Hg17|chr12 (40840897-40839662) | |
| 372-1605, gnl|Mm7|chr15 (93365992-93364800) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| vin (0.665115) | |
| tes (0.207814) | |
| fcc (0.197785) | |
| mgm (0.180343) | |
| fat (0.147427) | |
| liv (0.146284) | |
| pla (0.133672) | |
| ret (0.128733) | |
| tra (0.123092) | |
| clu (0.119646) | |
| nbm (0.0993246) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| vin (0.665115) | |
| tes (0.207814) | |
| fcc (0.197785) | |
| mgm (0.180343) | |
| fat (0.147427) | |
| liv (0.146284) | |
| pla (0.133672) | |
| ret (0.128733) | |
| tra (0.123092) | |
| clu (0.119646) | |
| nbm (0.0993246) |