Ss1.1-Thy1-THY010009B01.5
|
GGGAGCTTCCTCTTGACTGGAACCAGAATCTCGACAATGACGTGTTCGTGTCTTACTTTG
CAGATTTTTTTCGCCCCTGTTCCCACGTTGTTGCCCTGGCACAAGGCTCTCGGATCAGTG
AAATGCTGCTCCCCGAGCCCGGCGCCTTCTGTAGGGAGTTAGGCCGAGAGCGCTTGGGGT
GAGGCCGGTTCTCAGCCTGGGCGAGAGCTGCAGCCGCCGCCGCGCGGAAAGGAGCGGGGC
CCGGCCGCGGCGGGGCTCCCACGCGTCTCTGTGAGCAAGCGCGCTCAGCCCTCGCCTCCG
AAGGAAAACACAGCGTCTGGGGTTTCGTGGGTCTTCAATGCTGCTAACTATTTGAGACTT
CCTTGCATGTACTGAGCTTTTTGTTTTCGATGGAACAGCACGAGGAGACAAATCTTTAAA
CTTAGTGCTTTGTCTGTTCTTTATTTCTCTCAGGGTGGCCAGTATTTTGACTTACTTGTC
CCGCTTGAAAGCATTTGAGACGCGTGCTGCTGCTGCTCTAAACTAGTGGCTCTGGTTTCC
TCTCTCTGGCGTAAGATGCTAGAGCTTAACGTCAAATGTCTCGATGCATCACAGGTAAAG
TGTGGCTTCTTTCAGGATCTGTCTCGGAGTCGAGGCCTCAGGAATCCACTAAAACGATGT
GAAGAGCAGCCCGGGGGCTGAACTTAGGTTGGTTGCACCTAAATCCTTGTCGTCGGAGGC
AAGTCACGCGGGGGGAGGGACGCCTTGTGTTCGGAGCGAGCCCTGAATTAGGAGCTTCCC
CAGCTGGAAGCAGAGACACCCGCTTTGGGAGAAGAAACACCTGAGAAACTTGACAAGTCC
CCGCCCGCTTTACCATAATGACATTTATAGTTTTTAAAAAGTTTAGATGCCTTCTCCTTC
TGAGGGAAAAAGGGTGCTTTTTATTGTATAAAGCAGCAGCGTCTTATGTATCCTGATATC
CCATTGTTTGAACTTGCGTCTTTGGCTGATAGATTCTCAAGTATCCTTGACCTGGATGTT
AGAATGTGTGTTTGAGAGGTTTCTGGGAAGCCTCTCCTTTTGCCCTCGGGGAAAAAGCAA
AATAGCAACGTTTGGGCGATGGGCAGAGCGTGGCATACAGAAGCATCTTTTTGTCTAGGT
TTTACTTCTGCTCTTTATTGAAGACAAACATTCACCACAAGGGAGGGGGAAACAAAAGTT
TTGAGAGAAACTAATCTTCTTTGACAAGAGTTATTATTTAATATTTTGGCCTATTAAAGC
TTTCCTGGTTAGAACTCAGACTCCCCGTGCCAGTTGTTCAACGGACATACTATCCCATAC
TGTTTTCCTCTGTGCCCAACTGATTTCAAAAGTACTGCATTGCAAATAAACTGGTGACTG
TTTTTCTTCATAAAGTTCTGCATTTGGCATCTTCACTCTTTCCAAAATGTATCTGTACAT
CAGCAATGTCACTATTCCGAGTGTCTTTTTAGTGTGGCTGTAGTCTGGCTTCCTTTTACT
ATTGTACATACATTGTATCTTTGTTTTACGGTATCGAGTAATAAAAATGTAGACTTCATA
TTTTGTACAAAATGTCCTATGTACAGAATAAAAAAAGTTCATAGAAACAGCAAAACTAGG
TAAGTGGCACAATTATTTTTCTTTAGGGAAGATCTGTAACTTTCTGCTTTAGTGAAATGT
TTAGTGCCTACAACTTTTTTAACATTTTGTAATTCAGGACTTTTTGTTTCGACATTGTTT
ACGCAGAGAAACTTCATACACTTGCCATTTAATATGCTCTTTTCTCTAATTTAAAAAAAA
AAAAAAACCTCTAAAAATGGTGTATTATATGGACTAAATAAAGAACAT
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Blue-coloured subsequences are predicted RNA structures by RNAz
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GGGAGCTTCCTCTTGACTGGAACCAGAATCTCGACAATGACGTGTTCGTGTCTTACTTTG
CAGATTTTTTTCGCCCCTGTTCCCACGTTGTTGCCCTGGCACAAGGCTCTCGGATCAGTG
AAATGCTGCTCCCCGAGCCCGGCGCCTTCTGTAGGGAGTTAGGCCGAGAGCGCTTGGGGT
GAGGCCGGTTCTCAGCCTGGGCGAGAGCTGCAGCCGCCGCCGCGCGGAAAGGAGCGGGGC
CCGGCCGCGGCGGGGCTCCCACGCGTCTCTGTGAGCAAGCGCGCTCAGCCCTCGCCTCCG
AAGGAAAACACAGCGTCTGGGGTTTCGTGGGTCTTCAATGCTGCTAACTATTTGAGACTT
CCTTGCATGTACTGAGCTTTTTGTTTTCGATGGAACAGCACGAGGAGACAAATCTTTAAA
CTTAGTGCTTTGTCTGTTCTTTATTTCTCTCAGGGTGGCCAGTATTTTGACTTACTTGTC
CCGCTTGAAAGCATTTGAGACGCGTGCTGCTGCTGCTCTAAACTAGTGGCTCTGGTTTCC
TCTCTCTGGCGTAAGATGCTAGAGCTTAACGTCAAATGTCTCGATGCATCACAGGTAAAG
TGTGGCTTCTTTCAGGATCTGTCTCGGAGTCGAGGCCTCAGGAATCCACTAAAACGATGT
GAAGAGCAGCCCGGGGGCTGAACTTAGGTTGGTTGCACCTAAATCCTTGTCGTCGGAGGC
AAGTCACGCGGGGGGAGGGACGCCTTGTGTTCGGAGCGAGCCCTGAATTAGGAGCTTCCC
CAGCTGGAAGCAGAGACACCCGCTTTGGGAGAAGAAACACCTGAGAAACTTGACAAGTCC
CCGCCCGCTTTACCATAATGACATTTATAGTTTTTAAAAAGTTTAGATGCCTTCTCCTTC
TGAGGGAAAAAGGGTGCTTTTTATTGTATAAAGCAGCAGCGTCTTATGTATCCTGATATC
CCATTGTTTGAACTTGCGTCTTTGGCTGATAGATTCTCAAGTATCCTTGACCTGGATGTT
AGAATGTGTGTTTGAGAGGTTTCTGGGAAGCCTCTCCTTTTGCCCTCGGGGAAAAAGCAA
AATAGCAACGTTTGGGCGATGGGCAGAGCGTGGCATACAGAAGCATCTTTTTGTCTAGGT
TTTACTTCTGCTCTTTATTGAAGACAAACATTCACCACAAGGGAGGGGGAAACAAAAGTT
TTGAGAGAAACTAATCTTCTTTGACAAGAGTTATTATTTAATATTTTGGCCTATTAAAGC
TTTCCTGGTTAGAACTCAGACTCCCCGTGCCAGTTGTTCAACGGACATACTATCCCATAC
TGTTTTCCTCTGTGCCCAACTGATTTCAAAAGTACTGCATTGCAAATAAACTGGTGACTG
TTTTTCTTCATAAAGTTCTGCATTTGGCATCTTCACTCTTTCCAAAATGTATCTGTACAT
CAGCAATGTCACTATTCCGAGTGTCTTTTTAGTGTGGCTGTAGTCTGGCTTCCTTTTACT
ATTGTACATACATTGTATCTTTGTTTTACGGTATCGAGTAATAAAAATGTAGACTTCATA
TTTTGTACAAAATGTCCTATGTACAGAATAAAAAAAGTTCATAGAAACAGCAAAACTAGG
TAAGTGGCACAATTATTTTTCTTTAGGGAAGATCTGTAACTTTCTGCTTTAGTGAAATGT
TTAGTGCCTACAACTTTTTTAACATTTTGTAATTCAGGACTTTTTGTTTCGACATTGTTT
ACGCAGAGAAACTTCATACACTTGCCATTTAATATGCTCTTTTCTCTAATTTAAAAAAAA
AAAAAAACCTCTAAAAATGGTGTATTATATGGACTAAATAAAGAACAT
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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
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243-595, gnl|bosTau2|chr21 (46437387-46437740) |
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243-595, gnl|canFam2|chr8 (73010308-73010553) |
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243-595, gnl|dasNov1|scaffold_59172 (518-755) |
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243-595, gnl|echTel1|scaffold_277986 (2060-1831) |
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243-595, gnl|galGal2|chr5 (46235227-46235476) |
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243-595, gnl|hg17|chr14 (101462406-101462642) |
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243-595, gnl|Hg17|chr14 (101462410-101462779) |
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243-595, gnl|loxAfr1|scaffold_16697 (22449-22679) |
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243-595, gnl|mm7|chr12 (108099719-108099935) |
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243-595, gnl|Mm7|chr12 (108099729-108100089) |
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243-595, gnl|monDom2|scaffold_6 (85073419-85073678) |
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243-595, gnl|oryCun1|scaffold_4025 (5632-5404) |
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243-595, gnl|panTro1|chr15 (102069536-102069770) |
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243-595, gnl|rheMac2|chr7 (165211126-165211359) |
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243-595, gnl|rn3|chr6 (135305788-135306004) |
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243-595, gnl|xenTro1|scaffold_178 (1612712-1612965) |
| |
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1025-1846, gnl|bosTau2|chr21 (46438166-46439004) |
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1025-1846, gnl|Hg17|chr14 (101463248-101464055) |
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1025-1846, gnl|Mm7|chr12 (108100478-108101310) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
243-595, gnl|bosTau2|chr21 (46437387-46437740) |
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243-595, gnl|canFam2|chr8 (73010308-73010553) |
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243-595, gnl|dasNov1|scaffold_59172 (518-755) |
|
243-595, gnl|echTel1|scaffold_277986 (2060-1831) |
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243-595, gnl|galGal2|chr5 (46235227-46235476) |
|
243-595, gnl|hg17|chr14 (101462406-101462642) |
|
243-595, gnl|Hg17|chr14 (101462410-101462779) |
|
243-595, gnl|loxAfr1|scaffold_16697 (22449-22679) |
|
243-595, gnl|mm7|chr12 (108099719-108099935) |
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243-595, gnl|Mm7|chr12 (108099729-108100089) |
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243-595, gnl|monDom2|scaffold_6 (85073419-85073678) |
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243-595, gnl|oryCun1|scaffold_4025 (5632-5404) |
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243-595, gnl|panTro1|chr15 (102069536-102069770) |
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243-595, gnl|rheMac2|chr7 (165211126-165211359) |
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243-595, gnl|rn3|chr6 (135305788-135306004) |
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243-595, gnl|xenTro1|scaffold_178 (1612712-1612965) |
| |
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1025-1846, gnl|bosTau2|chr21 (46438166-46439004) |
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1025-1846, gnl|Hg17|chr14 (101463248-101464055) |
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1025-1846, gnl|Mm7|chr12 (108100478-108101310) |
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duo (0.691204) |
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pro (0.512033) |
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bfe (0.449573) |
|
tes (0.415628) |
|
lyg (0.399308) |
|
gul (0.355177) |
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cte (0.29274) |
|
liv (0.292569) |
|
spl (0.286369) |
|
che (0.272628) |
|
kid (0.259471) |
|
thg (0.253582) |
|
mas (0.210305) |
|
ldo (0.194005) |
|
fbs (0.175346) |
|
sin (0.174948) |
|
mcp (0.170648) |
|
fco (0.157208) |
|
fat (0.147427) |
|
lin (0.145603) |
|
pla (0.133672) |
|
ova (0.129132) |
|
ret (0.128733) |
|
eru (0.120048) |
|
pgl (0.118483) |
|
duo (0.691204) |
|
pro (0.512033) |
|
bfe (0.449573) |
|
tes (0.415628) |
|
lyg (0.399308) |
|
gul (0.355177) |
|
cte (0.29274) |
|
liv (0.292569) |
|
spl (0.286369) |
|
che (0.272628) |
|
kid (0.259471) |
|
thg (0.253582) |
|
mas (0.210305) |
|
ldo (0.194005) |
|
fbs (0.175346) |
|
sin (0.174948) |
|
mcp (0.170648) |
|
fco (0.157208) |
|
fat (0.147427) |
|
lin (0.145603) |
|
pla (0.133672) |
|
ova (0.129132) |
|
ret (0.128733) |
|
eru (0.120048) |
|
pgl (0.118483) |
