Ss1.1-Thy1-THY010009H02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGCGCACGCGCCGGCTGTTAGTGTGTCGGGAGGATGGCGGCGTCTTCGAGCGGCGAGAA GGAGAAGGAGCGGCCGGGCGGCGGCGGTTTGGGAGCGGCGAGCGGCAACAGCACTCGCGA GCGGCTGCTTTCTGCGCTGGAAGACCTAGAGGTCTTGTCCAGAGAACTTATAGAAATGCT GGCAATTTCAAGAAACCAAAAGTTGTTACAATCTGGAGAGGAGAACCAGGTCCTGGAGTT GTTAATTCACAGAGATGGGGAATTTCAAGAACTAATGAAATTAGCACTTAATCAGGGGAA AATTCATCATGAAATGCAACTTTTAGAAAAAGAAGTAGAAAAGAGAGACAGTGATATTCA GCAACTACAAAAACAGCTAAAGGAAGCAGAACAGATACTGGCAACGGCTGTTTACCAAGC AAAAGAGAAACTCAAGTCAATAGAAAAAGCAAGAAAAGGTGCTATCTCCTCTGAAGAAAT CATTAAGTACGCACATAGGATTAGTGCAAGTAACGCTGTGTGCGCCCCACTGACCTGGGT CCCAGGGGACCCACGGAGACCATACCCTACTGATTTGGAGATGAGAAGTGGATTACTGGG TCAAATGAATAATCCTTCCACTAATGGAGTGAACGGTCATTTACCAGGAGACGCACTTGC AGCAGGCAGGCTGCCAGATGTTCTTGCCCCCCAGTATCCGTGGCAGTCAAATGATATGGC AATGAATATGTTACCACCAAATCACAGTAATGACTTTTTGTTGGAGCCTCCAGGGCACAA TAAAGAAAATGAAGATGACGTAGAGGTCATGTCAACAGACTCCTCAAGCAGTAGCAGTGA CTCTGATTAAAGAAAATGTGACAAAAAAAGCATACAGAATTGAATATTATAGAAATCGGC TTCTTAAACAGCAGCAAATCTTTAAAAGCCAGGTGATACTGTAGTGAAAGTGTGCCATTG TTAAAAATTATTGTGGACTTTTTGAAGCCAAAAATCATGGTTTCGTTTCTGAACCACTAG GGGAATAGAGAAAAACAAAATTTACCGTTGGAATAAAAAGATTAGTCAGTTCAGTGCCAT CTTAGTTGGAGTTGTACATAGTAGTTCTGGAAATAAGATTTGAGGGACATGACCCATGTA CATCACTAATAGACCTCTTGTTATTATGAAAAACGTAAACAAAAGGCAGTAGATCGCTGA AAGTGCAACATAGCTCAGAGTAACAGAAAACTCATTTGAAAGTGAAGGCTGTTAGCTTTT GTCACAGGAGAACTTGCCTCAATTTGTACTGTTTGTAATTACTGTATTTTTTGTAAATAA ATACACTTGTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGCGCACGCGCCGGCTGTTAGTGTGTCGGGAGGATGGCGGCGTCTTCGAGCGGCGAGAA GGAGAAGGAGCGGCCGGGCGGCGGCGGTTTGGGAGCGGCGAGCGGCAACAGCACTCGCGA GCGGCTGCTTTCTGCGCTGGAAGACCTAGAGGTCTTGTCCAGAGAACTTATAGAAATGCT GGCAATTTCAAGAAACCAAAAGTTGTTACAATCTGGAGAGGAGAACCAGGTCCTGGAGTT GTTAATTCACAGAGATGGGGAATTTCAAGAACTAATGAAATTAGCACTTAATCAGGGGAA AATTCATCATGAAATGCAACTTTTAGAAAAAGAAGTAGAAAAGAGAGACAGTGATATTCA GCAACTACAAAAACAGCTAAAGGAAGCAGAACAGATACTGGCAACGGCTGTTTACCAAGC AAAAGAGAAACTCAAGTCAATAGAAAAAGCAAGAAAAGGTGCTATCTCCTCTGAAGAAAT CATTAAGTACGCACATAGGATTAGTGCAAGTAACGCTGTGTGCGCCCCACTGACCTGGGT CCCAGGGGACCCACGGAGACCATACCCTACTGATTTGGAGATGAGAAGTGGATTACTGGG TCAAATGAATAATCCTTCCACTAATGGAGTGAACGGTCATTTACCAGGAGACGCACTTGC AGCAGGCAGGCTGCCAGATGTTCTTGCCCCCCAGTATCCGTGGCAGTCAAATGATATGGC AATGAATATGTTACCACCAAATCACAGTAATGACTTTTTGTTGGAGCCTCCAGGGCACAA TAAAGAAAATGAAGATGACGTAGAGGTCATGTCAACAGACTCCTCAAGCAGTAGCAGTGA CTCTGATTAAAGAAAATGTGACAAAAAAAGCATACAGAATTGAATATTATAGAAATCGGC TTCTTAAACAGCAGCAAATCTTTAAAAGCCAGGTGATACTGTAGTGAAAGTGTGCCATTG TTAAAAATTATTGTGGACTTTTTGAAGCCAAAAATCATGGTTTCGTTTCTGAACCACTAG GGGAATAGAGAAAAACAAAATTTACCGTTGGAATAAAAAGATTAGTCAGTTCAGTGCCAT CTTAGTTGGAGTTGTACATAGTAGTTCTGGAAATAAGATTTGAGGGACATGACCCATGTA CATCACTAATAGACCTCTTGTTATTATGAAAAACGTAAACAAAAGGCAGTAGATCGCTGA AAGTGCAACATAGCTCAGAGTAACAGAAAACTCATTTGAAAGTGAAGGCTGTTAGCTTTT GTCACAGGAGAACTTGCCTCAATTTGTACTGTTTGTAATTACTGTATTTTTTGTAAATAA ATACACTTGTTT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 25-162, gnl|bosTau2|chr12 (7979591-7979457) | |
| 25-162, gnl|Hg17|chr13 (47567225-47567091) | |
| 25-162, gnl|Mm7|chr14 (68191763-68191903) | |
| 227-404, gnl|bosTau2|chr12 (7972181-7972004) | |
| 227-404, gnl|canFam2|chr22 (6344776-6344586) | |
| 227-404, gnl|danRer3|chrNA (194279696-194279507) | |
| 227-404, gnl|dasNov1|scaffold_15002 (10775-10965) | |
| 227-404, gnl|echTel1|scaffold_314155 (98346-98533) | |
| 227-404, gnl|fr1|chrUn (234864732-234864552) | |
| 227-404, gnl|galGal2|chr1 (160834620-160834810) | |
| 227-404, gnl|hg17|chr13 (47558412-47558602) | |
| 227-404, gnl|Hg17|chr13 (47558592-47558415) | |
| 227-404, gnl|loxAfr1|scaffold_48072 (8527-8337) | |
| 227-404, gnl|mm7|chr14 (68195702-68195512) | |
| 227-404, gnl|Mm7|chr14 (68195520-68195697) | |
| 227-404, gnl|monDom2|scaffold_15 (59148728-59148538) | |
| 227-404, gnl|oryCun1|scaffold_180072 (31565-31376) | |
| 227-404, gnl|panTro1|chr14_random (13620517-13620707) | |
| 227-404, gnl|rheMac2|chr17 (26865551-26865741) | |
| 227-404, gnl|rn3|chr15 (54178888-54178698) | |
| 227-404, gnl|tetNig1|chrUn_random (42152388-42152210) | |
| 227-404, gnl|xenTro1|scaffold_133 (128847-129035) | |
| 674-1321, gnl|bosTau2|chr12 (7965791-7965122) | |
| 674-1321, gnl|Hg17|chr13 (47549454-47548732) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 25-162, gnl|bosTau2|chr12 (7979591-7979457) | |
| 25-162, gnl|Hg17|chr13 (47567225-47567091) | |
| 25-162, gnl|Mm7|chr14 (68191763-68191903) | |
| 227-404, gnl|bosTau2|chr12 (7972181-7972004) | |
| 227-404, gnl|canFam2|chr22 (6344776-6344586) | |
| 227-404, gnl|danRer3|chrNA (194279696-194279507) | |
| 227-404, gnl|dasNov1|scaffold_15002 (10775-10965) | |
| 227-404, gnl|echTel1|scaffold_314155 (98346-98533) | |
| 227-404, gnl|fr1|chrUn (234864732-234864552) | |
| 227-404, gnl|galGal2|chr1 (160834620-160834810) | |
| 227-404, gnl|hg17|chr13 (47558412-47558602) | |
| 227-404, gnl|Hg17|chr13 (47558592-47558415) | |
| 227-404, gnl|loxAfr1|scaffold_48072 (8527-8337) | |
| 227-404, gnl|mm7|chr14 (68195702-68195512) | |
| 227-404, gnl|Mm7|chr14 (68195520-68195697) | |
| 227-404, gnl|monDom2|scaffold_15 (59148728-59148538) | |
| 227-404, gnl|oryCun1|scaffold_180072 (31565-31376) | |
| 227-404, gnl|panTro1|chr14_random (13620517-13620707) | |
| 227-404, gnl|rheMac2|chr17 (26865551-26865741) | |
| 227-404, gnl|rn3|chr15 (54178888-54178698) | |
| 227-404, gnl|tetNig1|chrUn_random (42152388-42152210) | |
| 227-404, gnl|xenTro1|scaffold_133 (128847-129035) | |
| 674-1321, gnl|bosTau2|chr12 (7965791-7965122) | |
| 674-1321, gnl|Hg17|chr13 (47549454-47548732) |
| Expressed library(ies): 37 entry(ies) | More info |
| Expressed library(ies): 37 entry(ies) | Help | Less info |
| lin (1.16482) | |
| ski (0.880411) | |
| aor (0.781097) | |
| tbr (0.770891) | |
| spc (0.680195) | |
| bfe (0.599431) | |
| ret (0.514933) | |
| tes (0.415628) | |
| ova (0.387397) | |
| thg (0.380373) | |
| cje (0.330469) | |
| cki (0.330469) | |
| sme (0.305437) | |
| isp (0.300752) | |
| fat (0.294855) | |
| lyg (0.266205) | |
| kid (0.259471) | |
| sug (0.254582) | |
| ese (0.253004) | |
| tra (0.246184) | |
| med (0.232504) | |
| mgp (0.230681) | |
| eje (0.197668) | |
| cmu (0.186393) | |
| fbs (0.175346) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| fco (0.157208) | |
| liv (0.146284) | |
| pty (0.142714) | |
| csk (0.140746) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| ldo (0.0970026) |
| Expressed library(ies): 37 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lin (1.16482) | |
| ski (0.880411) | |
| aor (0.781097) | |
| tbr (0.770891) | |
| spc (0.680195) | |
| bfe (0.599431) | |
| ret (0.514933) | |
| tes (0.415628) | |
| ova (0.387397) | |
| thg (0.380373) | |
| cje (0.330469) | |
| cki (0.330469) | |
| sme (0.305437) | |
| isp (0.300752) | |
| fat (0.294855) | |
| lyg (0.266205) | |
| kid (0.259471) | |
| sug (0.254582) | |
| ese (0.253004) | |
| tra (0.246184) | |
| med (0.232504) | |
| mgp (0.230681) | |
| eje (0.197668) | |
| cmu (0.186393) | |
| fbs (0.175346) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| fco (0.157208) | |
| liv (0.146284) | |
| pty (0.142714) | |
| csk (0.140746) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| ldo (0.0970026) |