Ss1.1-Thy1-THY010010H02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCAGCCGCTGCTTCCTCCGGCGCCTTGGGCGCTCCCAGCCCCGCCATGGCATCGCCCTA CCCGGAGGACCCCTCGCTGGAGAGGCATTTTAAGGGTCACCGAGATGCAGTTACCTGTGT GGACTTCAGTTTCAACATGAAGCAGCTGGCCAGCGGCTCCATGGACTCCTGCCTCATGGT GTGGCACATGAAGCCCCAGTCACGTGCCTACCGCTTCACCGGCCACAAGGATGCGGTCAC CTGTGTGAACTTCTCCCCTTCGGGACACCTGCTTGCCTCGGGCTCTCGCGACAAGACCGT TCGCATCTGGGTACCCAATATCAAAGGCGAGTCAACTGTGTTTCGTGCACACACGGCCAC GGTGAGGAGCGTCCATTTCTGCAGCGATGGCCAGTCCTTTGTGACGGCCTCTGACGACAA GACAATCAAGGTGTGGTCAACCCATCGCCAAAAATTCCTATTCTCCCTGAGCCAGCACAT CAACTGGGTCCGCTGTGCCAAGTTCTCCCCGGATGGCCGGCTCATTGTGTCTGCCAGTGA CGACAAGACTGTCAAGCTGTGGGACAAGACCAGCCGGGAGTGTGTCCACTCGTACTGTGA GCATGGCGGCTTTGTCACCTACGTGGACTTCCACCCCAGCGGCACATGTGTCGCTGCTGC CGGCATGGACAACACGGTGAAGGTGTGGGACGTGCGGACTCACCGGCTCTTGCAGCATTA TCAATTGCACAGCGCAGCGGTGAACGCCCTCTCCTTCCACCCGTCGGGAAACTACCTGGT CACAGCCTCCAGCGACTCCACCCTGAAGATCCTGGACCTCATGGAGGGCCGGCTGCTATA CACGCTCCACGGGCATCAGGGTCCAGCCACCACCGTTGCCTTTTCAAGAACGGGGGAATA TTTTGCTTCTGGAGGTTCTGATGAACAAGTGATGGTTTGGAAGAGTAACTTTGATGTCAT CGATTATGGAGAAGTCCTAAGAGTGCAGAGGCCCCCAGCCACGCTGGCCAGCTCCTCCGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCAGCCGCTGCTTCCTCCGGCGCCTTGGGCGCTCCCAGCCCCGCCATGGCATCGCCCTA CCCGGAGGACCCCTCGCTGGAGAGGCATTTTAAGGGTCACCGAGATGCAGTTACCTGTGT GGACTTCAGTTTCAACATGAAGCAGCTGGCCAGCGGCTCCATGGACTCCTGCCTCATGGT GTGGCACATGAAGCCCCAGTCACGTGCCTACCGCTTCACCGGCCACAAGGATGCGGTCAC CTGTGTGAACTTCTCCCCTTCGGGACACCTGCTTGCCTCGGGCTCTCGCGACAAGACCGT TCGCATCTGGGTACCCAATATCAAAGGCGAGTCAACTGTGTTTCGTGCACACACGGCCAC GGTGAGGAGCGTCCATTTCTGCAGCGATGGCCAGTCCTTTGTGACGGCCTCTGACGACAA GACAATCAAGGTGTGGTCAACCCATCGCCAAAAATTCCTATTCTCCCTGAGCCAGCACAT CAACTGGGTCCGCTGTGCCAAGTTCTCCCCGGATGGCCGGCTCATTGTGTCTGCCAGTGA CGACAAGACTGTCAAGCTGTGGGACAAGACCAGCCGGGAGTGTGTCCACTCGTACTGTGA GCATGGCGGCTTTGTCACCTACGTGGACTTCCACCCCAGCGGCACATGTGTCGCTGCTGC CGGCATGGACAACACGGTGAAGGTGTGGGACGTGCGGACTCACCGGCTCTTGCAGCATTA TCAATTGCACAGCGCAGCGGTGAACGCCCTCTCCTTCCACCCGTCGGGAAACTACCTGGT CACAGCCTCCAGCGACTCCACCCTGAAGATCCTGGACCTCATGGAGGGCCGGCTGCTATA CACGCTCCACGGGCATCAGGGTCCAGCCACCACCGTTGCCTTTTCAAGAACGGGGGAATA TTTTGCTTCTGGAGGTTCTGATGAACAAGTGATGGTTTGGAAGAGTAACTTTGATGTCAT CGATTATGGAGAAGTCCTAAGAGTGCAGAGGCCCCCAGCCACGCTGGCCAGCTCCTCCGG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 60 entry(ies) | More info |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
| 149-318, gnl|bosTau2|chr22 (36732184-36732015) | |
| 149-318, gnl|canFam2|chr20 (40591877-40591687) | |
| 149-318, gnl|danRer3|chr11 (1292882-1292691) | |
| 149-318, gnl|dasNov1|scaffold_126512 (1572-1382) | |
| 149-318, gnl|echTel1|scaffold_182744 (3090-3268) | |
| 149-318, gnl|fr1|chrUn (153835453-153835643) | |
| 149-318, gnl|galGal2|chr12 (60039-59860) | |
| 149-318, gnl|hg17|chr3 (52158858-52159048) | |
| 149-318, gnl|Hg17|chr3 (52159044-52158875) | |
| 149-318, gnl|loxAfr1|scaffold_180752 (438-248) | |
| 149-318, gnl|mm7|chr9 (106014516-106014326) | |
| 149-318, gnl|Mm7|chr9 (106014328-106014497) | |
| 149-318, gnl|monDom2|scaffold_5 (71218998-71218817) | |
| 149-318, gnl|oryCun1|scaffold_192070 (126331-126521) | |
| 149-318, gnl|panTro1|chr2 (53769320-53769510) | |
| 149-318, gnl|rheMac2|chr2 (84243227-84243037) | |
| 149-318, gnl|rn3|chr8 (111435536-111435346) | |
| 149-318, gnl|tetNig1|chr11 (3558488-3558298) | |
| 149-318, gnl|xenTro1|scaffold_1092 (197620-197801) | |
| 322-503, gnl|bosTau2|chr22 (36731629-36731448) | |
| 322-503, gnl|canFam2|chr20 (40592452-40592331) | |
| 322-503, gnl|danRer3|chr11 (1294892-1294773) | |
| 322-503, gnl|dasNov1|scaffold_36922 (7677-7795) | |
| 322-503, gnl|echTel1|scaffold_109316 (702-577) | |
| 322-503, gnl|fr1|chrUn (153835138-153835258) | |
| 322-503, gnl|galGal2|chr12 (66773-66652) | |
| 322-503, gnl|hg17|chr3 (52158259-52158380) | |
| 322-503, gnl|Hg17|chr3 (52158445-52158264) | |
| 322-503, gnl|loxAfr1|scaffold_110577 (345-460) | |
| 322-503, gnl|mm7|chr9 (106015029-106014908) | |
| 322-503, gnl|Mm7|chr9 (106014841-106015022) | |
| 322-503, gnl|monDom2|scaffold_5 (71220048-71219927) | |
| 322-503, gnl|oryCun1|scaffold_192070 (125804-125925) | |
| 322-503, gnl|panTro1|chr2 (53768721-53768842) | |
| 322-503, gnl|rheMac2|chr2 (84243827-84243706) | |
| 322-503, gnl|rn3|chr8 (111436067-111435946) | |
| 322-503, gnl|tetNig1|chr11 (3558823-3558708) | |
| 322-503, gnl|xenTro1|scaffold_1092 (195609-195730) | |
| 609-723, gnl|bosTau2|chr22 (36728993-36728879) | |
| 609-723, gnl|canFam2|chr20 (40594816-40594681) | |
| 609-723, gnl|danRer3|chr11 (1295475-1295349) | |
| 609-723, gnl|dasNov1|scaffold_11260 (4662-4531) | |
| 609-723, gnl|echTel1|scaffold_311100 (433-564) | |
| 609-723, gnl|fr1|chrUn (153834548-153834678) | |
| 609-723, gnl|galGal2|chr12 (69223-69095) | |
| 609-723, gnl|hg17|chr3 (52154895-52155032) | |
| 609-723, gnl|Hg17|chr3 (52155018-52154904) | |
| 609-723, gnl|loxAfr1|scaffold_7311 (76202-76074) | |
| 609-723, gnl|mm7|chr9 (106017563-106017427) | |
| 609-723, gnl|Mm7|chr9 (106017438-106017552) | |
| 609-723, gnl|monDom2|scaffold_5 (71223299-71223162) | |
| 609-723, gnl|oryCun1|scaffold_192070 (123537-123673) | |
| 609-723, gnl|panTro1|chr2 (53765361-53765498) | |
| 609-723, gnl|rheMac2|chr2 (84247211-84247074) | |
| 609-723, gnl|rn3|chr8 (111438987-111438853) | |
| 609-723, gnl|tetNig1|chr11 (3559410-3559278) | |
| 609-723, gnl|xenTro1|scaffold_1092 (193607-193736) | |
| 726-860, gnl|bosTau2|chr22 (36721039-36720905) | |
| 726-860, gnl|Hg17|chr3 (52147358-52147224) | |
| 726-860, gnl|Mm7|chr9 (106024589-106024723) |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 149-318, gnl|bosTau2|chr22 (36732184-36732015) | |
| 149-318, gnl|canFam2|chr20 (40591877-40591687) | |
| 149-318, gnl|danRer3|chr11 (1292882-1292691) | |
| 149-318, gnl|dasNov1|scaffold_126512 (1572-1382) | |
| 149-318, gnl|echTel1|scaffold_182744 (3090-3268) | |
| 149-318, gnl|fr1|chrUn (153835453-153835643) | |
| 149-318, gnl|galGal2|chr12 (60039-59860) | |
| 149-318, gnl|hg17|chr3 (52158858-52159048) | |
| 149-318, gnl|Hg17|chr3 (52159044-52158875) | |
| 149-318, gnl|loxAfr1|scaffold_180752 (438-248) | |
| 149-318, gnl|mm7|chr9 (106014516-106014326) | |
| 149-318, gnl|Mm7|chr9 (106014328-106014497) | |
| 149-318, gnl|monDom2|scaffold_5 (71218998-71218817) | |
| 149-318, gnl|oryCun1|scaffold_192070 (126331-126521) | |
| 149-318, gnl|panTro1|chr2 (53769320-53769510) | |
| 149-318, gnl|rheMac2|chr2 (84243227-84243037) | |
| 149-318, gnl|rn3|chr8 (111435536-111435346) | |
| 149-318, gnl|tetNig1|chr11 (3558488-3558298) | |
| 149-318, gnl|xenTro1|scaffold_1092 (197620-197801) | |
| 322-503, gnl|bosTau2|chr22 (36731629-36731448) | |
| 322-503, gnl|canFam2|chr20 (40592452-40592331) | |
| 322-503, gnl|danRer3|chr11 (1294892-1294773) | |
| 322-503, gnl|dasNov1|scaffold_36922 (7677-7795) | |
| 322-503, gnl|echTel1|scaffold_109316 (702-577) | |
| 322-503, gnl|fr1|chrUn (153835138-153835258) | |
| 322-503, gnl|galGal2|chr12 (66773-66652) | |
| 322-503, gnl|hg17|chr3 (52158259-52158380) | |
| 322-503, gnl|Hg17|chr3 (52158445-52158264) | |
| 322-503, gnl|loxAfr1|scaffold_110577 (345-460) | |
| 322-503, gnl|mm7|chr9 (106015029-106014908) | |
| 322-503, gnl|Mm7|chr9 (106014841-106015022) | |
| 322-503, gnl|monDom2|scaffold_5 (71220048-71219927) | |
| 322-503, gnl|oryCun1|scaffold_192070 (125804-125925) | |
| 322-503, gnl|panTro1|chr2 (53768721-53768842) | |
| 322-503, gnl|rheMac2|chr2 (84243827-84243706) | |
| 322-503, gnl|rn3|chr8 (111436067-111435946) | |
| 322-503, gnl|tetNig1|chr11 (3558823-3558708) | |
| 322-503, gnl|xenTro1|scaffold_1092 (195609-195730) | |
| 609-723, gnl|bosTau2|chr22 (36728993-36728879) | |
| 609-723, gnl|canFam2|chr20 (40594816-40594681) | |
| 609-723, gnl|danRer3|chr11 (1295475-1295349) | |
| 609-723, gnl|dasNov1|scaffold_11260 (4662-4531) | |
| 609-723, gnl|echTel1|scaffold_311100 (433-564) | |
| 609-723, gnl|fr1|chrUn (153834548-153834678) | |
| 609-723, gnl|galGal2|chr12 (69223-69095) | |
| 609-723, gnl|hg17|chr3 (52154895-52155032) | |
| 609-723, gnl|Hg17|chr3 (52155018-52154904) | |
| 609-723, gnl|loxAfr1|scaffold_7311 (76202-76074) | |
| 609-723, gnl|mm7|chr9 (106017563-106017427) | |
| 609-723, gnl|Mm7|chr9 (106017438-106017552) | |
| 609-723, gnl|monDom2|scaffold_5 (71223299-71223162) | |
| 609-723, gnl|oryCun1|scaffold_192070 (123537-123673) | |
| 609-723, gnl|panTro1|chr2 (53765361-53765498) | |
| 609-723, gnl|rheMac2|chr2 (84247211-84247074) | |
| 609-723, gnl|rn3|chr8 (111438987-111438853) | |
| 609-723, gnl|tetNig1|chr11 (3559410-3559278) | |
| 609-723, gnl|xenTro1|scaffold_1092 (193607-193736) | |
| 726-860, gnl|bosTau2|chr22 (36721039-36720905) | |
| 726-860, gnl|Hg17|chr3 (52147358-52147224) | |
| 726-860, gnl|Mm7|chr9 (106024589-106024723) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mcp (0.170648) |