Non-Coding RNA Search

Ss1.1-Thy1-THY010011G02.5

Sequence:


               
               AATTCGCGCCATGGCGCTGCTCTGGTTGCAGCGCTTCGAGCTTCTGCTCTTTGCTGCTAC
TTTCCTGTGCGGAGCCGTGGCGGCCGTGGCGCTGACCCGGACCCAGGTGGGAAAACACTG
TGGAGATAGTTGAAGGTTACACAAGTCTGGTTCTACTCCAGGATTTCCGTACGAGGAGAG
ACTGGAACTTCTGAAGCATTTCTGAAACTCAACTGTATTTTATAGCCACTGCATATTTCC
TGATCCTTCTGGCTACTGCAGGTTTGATTTCCCTAGCCGACTCTTTAATCTCCTGGCCCA
GAAACTGATAGGGCATAAATAACTTCCTAGGAAGGCCCTGGGCTAGGATATTTCCAACAC
CTGCCAGAAGCCTGCATTCAGAGGCATTAGCCTAAAAGCTAGGACTCAGCAGCTTCTTTC
CACAGGGCTCCTTCAGGGGCAGCTGTCCCCTGTATGGTGTGGCCACCCTGAATGACTCCT
CCTTGGCCCTGTCCCGACCCTCGGCCCCATCCCTCTGCTACTTTGTGGCTGGGGCTTCTG
GCCTACTGGCCCTCTACTGTCTCCTGCTTCTGCTCTTCTGGGTCTACTGCAGCTGCATCG
AGAACTCCCAAAGGTGACTGCCCACTCTGAAGGCGGGGGCTGAGGTGGGAAGAGTCCCAC
CTCAACCACAAGGCTTATTCTCTCCCTCCTCATAGAGGCCGTACGGGGCTCTGCATTGTA
TTGGCCATCTCAGCTGTAGCCATCTTCCTGGTTTTAGTGTCTGCCTGTATCCTCCGATTT
GGCACCAGTTCCCTCTGCAAATCCATCGTCTCCCTGAACATAACTAGGTAACTGGAGAGG
GAGGGAATCCTGGTTGGGGCTGACTACCTTTTCTCTGCAGAGGGGATTCTATACTCCTCC
CTTTCATATCCCCATCACTTCTCATCTCCAAGGACACTTGAGCACATTGGTGTTTGGGGG
TATATCCCCTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATTCGCGCCATGGCGCTGCTCTGGTTGCAGCGCTTCGAGCTTCTGCTCTTTGCTGCTAC
TTTCCTGTGCGGAGCCGTGGCGGCCGTGGCGCTGACCCGGACCCAGGTGGGAAAACACTG
TGGAGATAGTTGAAGGTTACACAAGTCTGGTTCTACTCCAGGATTTCCGTACGAGGAGAG
ACTGGAACTTCTGAAGCATTTCTGAAACTCAACTGTATTTTATAGCCACTGCATATTTCC
TGATCCTTCTGGCTACTGCAGGTTTGATTTCCCTAGCCGACTCTTTAATCTCCTGGCCCA
GAAACTGATAGGGCATAAATAACTTCCTAGGAAGGCCCTGGGCTAGGATATTTCCAACAC
CTGCCAGAAGCCTGCATTCAGAGGCATTAGCCTAAAAGCTAGGACTCAGCAGCTTCTTTC
CACAGGGCTCCTTCAGGGGCAGCTGTCCCCTGTATGGTGTGGCCACCCTGAATGACTCCT
CCTTGGCCCTGTCCCGACCCTCGGCCCCATCCCTCTGCTACTTTGTGGCTGGGGCTTCTG
GCCTACTGGCCCTCTACTGTCTCCTGCTTCTGCTCTTCTGGGTCTACTGCAGCTGCATCG
AGAACTCCCAAAGGTGACTGCCCACTCTGAAGGCGGGGGCTGAGGTGGGAAGAGTCCCAC
CTCAACCACAAGGCTTATTCTCTCCCTCCTCATAGAGGCCGTACGGGGCTCTGCATTGTA
TTGGCCATCTCAGCTGTAGCCATCTTCCTGGTTTTAGTGTCTGCCTGTATCCTCCGATTT
GGCACCAGTTCCCTCTGCAAATCCATCGTCTCCCTGAACATAACTAGGTAACTGGAGAGG
GAGGGAATCCTGGTTGGGGCTGACTACCTTTTCTCTGCAGAGGGGATTCTATACTCCTCC
CTTTCATATCCCCATCACTTCTCATCTCCAAGGACACTTGAGCACATTGGTGTTTGGGGG
TATATCCCCTCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               492-728, - strand, RNAz p=0.963909

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               492-728, - strand, RNAz p=0.963909

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               105-969, gnl|bosTau2|chr29 (32667972-32667112)
               

               
               105-969, gnl|Hg17|chr11 (62312146-62313615)
               

               
               105-969, gnl|Mm7|chr19 (8454122-8453307)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               105-969, gnl|bosTau2|chr29 (32667972-32667112)
               

               
               105-969, gnl|Hg17|chr11 (62312146-62313615)
               

               
               105-969, gnl|Mm7|chr19 (8454122-8453307)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbr (0.255951)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (0.255951)

	105-969, gnl\|bosTau2\|chr29 (32667972-32667112)
	105-969, gnl\|Hg17\|chr11 (62312146-62313615)
	105-969, gnl\|Mm7\|chr19 (8454122-8453307)