Ss1.1-Thy1-THY010012C06.5
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TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGCGCGCGCTCTCCAT
CGCCTGTCTGTTTGTTGTAACTTAATTCTTCCACTTAAGACACGTGCCGTGCCCGCCATC
CGTTTCCCCCTCCCCTTAACGTCGCAGGATCTCTGATCCTAGACAATGTCTAACCTGCTT
TGACTGACCCTGGTTATGACACGCCTTTCTAACCACCAAAACTATTGACTGATGATCTTC
TCCCCCAAGAACGCTAACACAGAAGCTGCCCTCTGAGACTCTGGATGACTTTATTCTTCA
GGAGCTGCGGCGGCCGGCGGGCTGCTTTCTGTGGTGGTGTGGTTGGATGGGGGCACCGGG
ATGAGCTACAGGTATCAACTTCTAGATCACCACTTAATGACCTAGCTACAAGTGACTGGC
GTGGAAAATCTAGGGGCAGCGAGGTCCATCAGGAAGATGTCTAAAGAAATGGCAGACCAA
AAAGAAGGAGAAGCTAAGGAAAAAGAGGTGTGCAGAGACCAGATCAAAGAATCGGACAAA
GAAGAGGAACCACCAGCTGCTGCATCCCATGGCCAGGGGTGGCGTCCAGGTGGCAGAGCA
CCTAGGAACTCAAGGCCTGAACCCGGGGTCAGACCCCCTGCACTCCCTAACATGGTCAAT
GACCCACCAGTACCCGCCTTACTGTGGGCTCAGGAGATGGGCCACGTCCTGGCAGGCCGT
GCCCGCAAGCTGTTGCTGCAGTTTGGGGTGCTCTTCTGTACCATCCTCCTCCTGCTCTGG
GTGTCTGTCTTCCTCTACGGCTCCTTCTACTATTCCTACATGCCGACAGTCAGCCACCTC
AGCCCCGTGCATTTCTACTACAGGACCGACTGCGATTCTTCCTCCTCCTTACTCTGCTCC
TTCCCCGTTGCCAACGTCTCACTGGCTAAGGGTGGACGTGATCGGGTGCTGATGTATGGA
CAGCCGTACCGCGTCACCTTAGAGCTCGAGCTGCCAGAGTCTCGCGTGAACCAAGATTTG
GGCATGTTCTTGGTCACCATCTCCTGCTACACCAGAGGTGGCCGAATCATCTCCACCTCT
TCCCGCTCCGTGATGCTGCACTACCGCTCAGACCTGCTCCAGATGCTTGACACGCTGGTC
TTCTCCAGCCTCCTGCTGTTCGGCTTTGCAGAGCAGAAGCAGATCCTGGAGGTGGAGCTA
TACCCGGAATACAGAGAGAACTCGTACGTGCCGACCACCGGCGCCATTATCGAGATCCAC
AGCAAGCGCATCCAGCTGTACGGCGCCTACCTCCGCATCCATGCCCACTTCACTGGGCTC
AGGTACCTGCTGTACAACTTCCCCATGACCTGCGCCTTCGTCGGCGTCGCCAGCAACTTC
ACCTTCCTCAGTGTCATCGTGCTCTTCAGCTACATGCAGTGGGTGTGGGGCGGCGTCTGG
CCCCGACACCGCCTCTCTTTGCAGGTAAACGTCCGAAACAGAGACGGCTCCCGAAAGAAA
GTCCAGCGAAGGATTGCTGCCCGCCAGCCAGGCACAGGGCCCCAAAGCCAGGAGGCGGCC
CCTCAGCTGTCACAGGTTACAGAGCACAGGGAGAGCCCTGCAGCCCCCTCGGGGACAGCT
GCAGAGGGCCAGCTGTCCCCAGAGGAGAAGCCAGATCAGCAGCAGCCCCTGAGTGGCGAG
GAGGAGCCAGAGCCCGAGGCCAGTGACGGTTCAGGCTCCTGGGAAGATGCAACCCTGTTG
ACAGAGACCAGCCTGCCAGTTCCTGCCCCTACCCTTGCCCCGGAGACCGTGGGCAGCTCC
GAATCCTCCGCGGGCACCGTCCGCCAGCGCCCTATGTGCTCCAGTTCCTGAAGAGAACGG
GGCAGCGTCCCCACCTTCCAGCCCTCCCCCCCCCACCCCTTTTCCGTGCCGTGGCTCCCC
GAATAAACTATTTTCGTGCCAGCTAAAAAAAAAAAAAAAAAAAAAAAA
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Blue-coloured subsequences are predicted RNA structures by RNAz
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TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGCGCGCGCTCTCCAT
CGCCTGTCTGTTTGTTGTAACTTAATTCTTCCACTTAAGACACGTGCCGTGCCCGCCATC
CGTTTCCCCCTCCCCTTAACGTCGCAGGATCTCTGATCCTAGACAATGTCTAACCTGCTT
TGACTGACCCTGGTTATGACACGCCTTTCTAACCACCAAAACTATTGACTGATGATCTTC
TCCCCCAAGAACGCTAACACAGAAGCTGCCCTCTGAGACTCTGGATGACTTTATTCTTCA
GGAGCTGCGGCGGCCGGCGGGCTGCTTTCTGTGGTGGTGTGGTTGGATGGGGGCACCGGG
ATGAGCTACAGGTATCAACTTCTAGATCACCACTTAATGACCTAGCTACAAGTGACTGGC
GTGGAAAATCTAGGGGCAGCGAGGTCCATCAGGAAGATGTCTAAAGAAATGGCAGACCAA
AAAGAAGGAGAAGCTAAGGAAAAAGAGGTGTGCAGAGACCAGATCAAAGAATCGGACAAA
GAAGAGGAACCACCAGCTGCTGCATCCCATGGCCAGGGGTGGCGTCCAGGTGGCAGAGCA
CCTAGGAACTCAAGGCCTGAACCCGGGGTCAGACCCCCTGCACTCCCTAACATGGTCAAT
GACCCACCAGTACCCGCCTTACTGTGGGCTCAGGAGATGGGCCACGTCCTGGCAGGCCGT
GCCCGCAAGCTGTTGCTGCAGTTTGGGGTGCTCTTCTGTACCATCCTCCTCCTGCTCTGG
GTGTCTGTCTTCCTCTACGGCTCCTTCTACTATTCCTACATGCCGACAGTCAGCCACCTC
AGCCCCGTGCATTTCTACTACAGGACCGACTGCGATTCTTCCTCCTCCTTACTCTGCTCC
TTCCCCGTTGCCAACGTCTCACTGGCTAAGGGTGGACGTGATCGGGTGCTGATGTATGGA
CAGCCGTACCGCGTCACCTTAGAGCTCGAGCTGCCAGAGTCTCGCGTGAACCAAGATTTG
GGCATGTTCTTGGTCACCATCTCCTGCTACACCAGAGGTGGCCGAATCATCTCCACCTCT
TCCCGCTCCGTGATGCTGCACTACCGCTCAGACCTGCTCCAGATGCTTGACACGCTGGTC
TTCTCCAGCCTCCTGCTGTTCGGCTTTGCAGAGCAGAAGCAGATCCTGGAGGTGGAGCTA
TACCCGGAATACAGAGAGAACTCGTACGTGCCGACCACCGGCGCCATTATCGAGATCCAC
AGCAAGCGCATCCAGCTGTACGGCGCCTACCTCCGCATCCATGCCCACTTCACTGGGCTC
AGGTACCTGCTGTACAACTTCCCCATGACCTGCGCCTTCGTCGGCGTCGCCAGCAACTTC
ACCTTCCTCAGTGTCATCGTGCTCTTCAGCTACATGCAGTGGGTGTGGGGCGGCGTCTGG
CCCCGACACCGCCTCTCTTTGCAGGTAAACGTCCGAAACAGAGACGGCTCCCGAAAGAAA
GTCCAGCGAAGGATTGCTGCCCGCCAGCCAGGCACAGGGCCCCAAAGCCAGGAGGCGGCC
CCTCAGCTGTCACAGGTTACAGAGCACAGGGAGAGCCCTGCAGCCCCCTCGGGGACAGCT
GCAGAGGGCCAGCTGTCCCCAGAGGAGAAGCCAGATCAGCAGCAGCCCCTGAGTGGCGAG
GAGGAGCCAGAGCCCGAGGCCAGTGACGGTTCAGGCTCCTGGGAAGATGCAACCCTGTTG
ACAGAGACCAGCCTGCCAGTTCCTGCCCCTACCCTTGCCCCGGAGACCGTGGGCAGCTCC
GAATCCTCCGCGGGCACCGTCCGCCAGCGCCCTATGTGCTCCAGTTCCTGAAGAGAACGG
GGCAGCGTCCCCACCTTCCAGCCCTCCCCCCCCCACCCCTTTTCCGTGCCGTGGCTCCCC
GAATAAACTATTTTCGTGCCAGCTAAAAAAAAAAAAAAAAAAAAAAAA
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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
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125-300, gnl|bosTau2|chr29 (32131398-32131203) |
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125-300, gnl|canFam2|chr18 (56985359-56984960) |
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125-300, gnl|dasNov1|scaffold_5984 (45962-45579) |
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125-300, gnl|echTel1|scaffold_47630 (1049-1427) |
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125-300, gnl|hg17|chr11 (62233135-62233498) |
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125-300, gnl|Hg17|chr11 (62233385-62233223) |
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125-300, gnl|loxAfr1|scaffold_7523 (11490-11101) |
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125-300, gnl|mm7|chr19 (8518081-8517751) |
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125-300, gnl|oryCun1|scaffold_92642 (1987-1629) |
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125-300, gnl|panTro1|chr9 (63230087-63230450) |
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125-300, gnl|rheMac2|chr14 (11377212-11376846) |
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125-300, gnl|rn3|chr1 (211666521-211666201) |
| |
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545-864, gnl|bosTau2|chr29 (32127617-32127298) |
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545-864, gnl|Hg17|chr11 (62229667-62229348) |
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545-864, gnl|Mm7|chr19 (8521268-8521587) |
| |
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945-1093, gnl|bosTau2|chr29 (32123027-32122879) |
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945-1093, gnl|Hg17|chr11 (62218760-62218612) |
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945-1093, gnl|Mm7|chr19 (8525332-8525480) |
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1291-1466, gnl|bosTau2|chr29 (32121217-32121046) |
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1291-1466, gnl|Hg17|chr11 (62215499-62215326) |
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1291-1466, gnl|Mm7|chr19 (8527538-8527711) |
| |
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1708-1944, gnl|bosTau2|chr29 (32120274-32120034) |
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1708-1944, gnl|Hg17|chr11 (62214570-62214325) |
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1708-1944, gnl|Mm7|chr19 (8528619-8528832) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
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125-300, gnl|bosTau2|chr29 (32131398-32131203) |
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125-300, gnl|canFam2|chr18 (56985359-56984960) |
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125-300, gnl|dasNov1|scaffold_5984 (45962-45579) |
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125-300, gnl|echTel1|scaffold_47630 (1049-1427) |
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125-300, gnl|hg17|chr11 (62233135-62233498) |
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125-300, gnl|Hg17|chr11 (62233385-62233223) |
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125-300, gnl|loxAfr1|scaffold_7523 (11490-11101) |
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125-300, gnl|mm7|chr19 (8518081-8517751) |
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125-300, gnl|oryCun1|scaffold_92642 (1987-1629) |
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125-300, gnl|panTro1|chr9 (63230087-63230450) |
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125-300, gnl|rheMac2|chr14 (11377212-11376846) |
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125-300, gnl|rn3|chr1 (211666521-211666201) |
| |
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545-864, gnl|bosTau2|chr29 (32127617-32127298) |
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545-864, gnl|Hg17|chr11 (62229667-62229348) |
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545-864, gnl|Mm7|chr19 (8521268-8521587) |
| |
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945-1093, gnl|bosTau2|chr29 (32123027-32122879) |
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945-1093, gnl|Hg17|chr11 (62218760-62218612) |
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945-1093, gnl|Mm7|chr19 (8525332-8525480) |
| |
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1291-1466, gnl|bosTau2|chr29 (32121217-32121046) |
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1291-1466, gnl|Hg17|chr11 (62215499-62215326) |
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1291-1466, gnl|Mm7|chr19 (8527538-8527711) |
| |
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1708-1944, gnl|bosTau2|chr29 (32120274-32120034) |
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1708-1944, gnl|Hg17|chr11 (62214570-62214325) |
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1708-1944, gnl|Mm7|chr19 (8528619-8528832) |
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eep (0.245128) |
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ebs (0.236602) |
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ecc (0.23007) |
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eje (0.197668) |
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mcp (0.170648) |
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eye (0.170503) |
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nco (0.161734) |
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hyp (0.142837) |
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lnt (0.142308) |
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jca (0.11396) |
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eep (0.245128) |
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ebs (0.236602) |
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ecc (0.23007) |
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eje (0.197668) |
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mcp (0.170648) |
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eye (0.170503) |
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nco (0.161734) |
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hyp (0.142837) |
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lnt (0.142308) |
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jca (0.11396) |
