Non-Coding RNA Search

Ss1.1-Thy1-THY010012D02.5

Sequence:


               
               ATTTTGTGCCCGTATCTGGTTGATTTCTGGACGGTCGCTGCGGTGACCGCTCCCCACCCC
CAACTTTGCTGCTGTCTCGCGCATCTCCCTCCCTCCCCCCACCCCCGACCCTGCTCGGGT
TCCCTCCAGGCCTTCTGCCCCTGGTCGCTCGGGCTCGCCGCGCTGTCACCCGCTGCTGTC
GTCGGGAGGAAAGATGAGTGGGAGGGCTGAGTTTCGAGAGCCGAATGCAGAAGTTCCAAG
ACCAATTCCCCACATAGGGGCTGATTACATTCCAACTGAGGAAGAAAGAAGAGTCTTTGC
AGAATGCAATGATGAAAGCTTCTGGTTCAGATCTGTACCTTTGGCTGCAACAAGTATGTT
GATTACTCAAGGATTGATTAGTAAAGGAATCCTTTCAAGTCATCCCAGATATGGTTCTAT
ACCTAAACTTATATTTGCTTGCATCATGGGATACTTTGCTGGAAAGCTTTCTTATGTGAA
AACTTGCCAAGAGAAGTTTAAGAATCTTGAGAATTCCCCTCTTGGAGAAGCTTTACGATC
AGGACAGGCACGACGATCTTCACCAACTGGGCACTATTCTCAGAAGTCAAGATATGACTC
AAACGTGAGTGGTCATTCATCTTTTGCGACATCCCCAGCAGCAGACAACATAGAAAAAGA
GATGCTTCCTCATTATGAGCCGATTCCATTCAGTGCTTCTGTGAACGAATCTGCTCCCAC
TGGTATTACTGACCATATTGCCCAAGGACCTGATCCCAACATTGAAGAAAGTCCTAAAAG
AAAAAATGTTACATATGAGGAATTAAGGAATAAGAACAGAGAGTCATATGAAGTTACTTT
AACACATAAGACTGACCCCTCAGTCAGGCCTATGCAGGAAAGAATGCCAAAAAAAGAAGT
CAAAGTAAACAAATATGGAGATACTTGGGATGAGTGAAAAATTGCATCATTTGGACCTAC
GGAAGGAGTTTGAATATCCAGCTTCATCTGGGTGATCATGAACATCTGCATGCTTTGAGC
TCAGCAGCAGTCTTCATAAACACATTTAAACCTAGAACCTGGGGTTTTGTGGTTTGGCTT
AAGAGAGTGTAATACTCTGGAATCACCTTATATGGAAATAAATATGCTACCTGCATGTTG
AATTGGGGTGGGAGGGGGGAAGCAAGCGTTAAACTTTACATCAGAAATTATTAAAAAGCC
TTTCTCTGGTGTTTGCTGTATTCTCTTAATGTCTGTGGTAAATAAAATATAAAGGTACAT
CCTTATATGGAAATAAATATGCTACCTGCATGTTGAATTGGGGTGGGAGGGGGGAAGCAA
GCGTTAAACTTTACATCAGAAATTATTAAAAAGCCTTTCTCTGGTGTTTGCTGTATTCTC
TTAATGTCTGTGGTAAATAAAATATAAAGGTACATGCATCTTTATTGATTTTCTGGTTTT
CTTGTTTGCAGTCCATTTAAGTACAATTATAACTGAGTAGTGTTTTGGAGGGATAGGAAA
TAAAGTCATCTGACCATTTAATAATATGATGAATGTAACTGATGTAAATAATCCAACATA
TAATGAATAGCTCAATGTCTTAAAAAAGCATTGTTTGAAAAATTTGCATATTCCAGGGGA
ATAAAAATTTGGTAAACTTTAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTTGTGCCCGTATCTGGTTGATTTCTGGACGGTCGCTGCGGTGACCGCTCCCCACCCC
CAACTTTGCTGCTGTCTCGCGCATCTCCCTCCCTCCCCCCACCCCCGACCCTGCTCGGGT
TCCCTCCAGGCCTTCTGCCCCTGGTCGCTCGGGCTCGCCGCGCTGTCACCCGCTGCTGTC
GTCGGGAGGAAAGATGAGTGGGAGGGCTGAGTTTCGAGAGCCGAATGCAGAAGTTCCAAG
ACCAATTCCCCACATAGGGGCTGATTACATTCCAACTGAGGAAGAAAGAAGAGTCTTTGC
AGAATGCAATGATGAAAGCTTCTGGTTCAGATCTGTACCTTTGGCTGCAACAAGTATGTT
GATTACTCAAGGATTGATTAGTAAAGGAATCCTTTCAAGTCATCCCAGATATGGTTCTAT
ACCTAAACTTATATTTGCTTGCATCATGGGATACTTTGCTGGAAAGCTTTCTTATGTGAA
AACTTGCCAAGAGAAGTTTAAGAATCTTGAGAATTCCCCTCTTGGAGAAGCTTTACGATC
AGGACAGGCACGACGATCTTCACCAACTGGGCACTATTCTCAGAAGTCAAGATATGACTC
AAACGTGAGTGGTCATTCATCTTTTGCGACATCCCCAGCAGCAGACAACATAGAAAAAGA
GATGCTTCCTCATTATGAGCCGATTCCATTCAGTGCTTCTGTGAACGAATCTGCTCCCAC
TGGTATTACTGACCATATTGCCCAAGGACCTGATCCCAACATTGAAGAAAGTCCTAAAAG
AAAAAATGTTACATATGAGGAATTAAGGAATAAGAACAGAGAGTCATATGAAGTTACTTT
AACACATAAGACTGACCCCTCAGTCAGGCCTATGCAGGAAAGAATGCCAAAAAAAGAAGT
CAAAGTAAACAAATATGGAGATACTTGGGATGAGTGAAAAATTGCATCATTTGGACCTAC
GGAAGGAGTTTGAATATCCAGCTTCATCTGGGTGATCATGAACATCTGCATGCTTTGAGC
TCAGCAGCAGTCTTCATAAACACATTTAAACCTAGAACCTGGGGTTTTGTGGTTTGGCTT
AAGAGAGTGTAATACTCTGGAATCACCTTATATGGAAATAAATATGCTACCTGCATGTTG
AATTGGGGTGGGAGGGGGGAAGCAAGCGTTAAACTTTACATCAGAAATTATTAAAAAGCC
TTTCTCTGGTGTTTGCTGTATTCTCTTAATGTCTGTGGTAAATAAAATATAAAGGTACAT
CCTTATATGGAAATAAATATGCTACCTGCATGTTGAATTGGGGTGGGAGGGGGGAAGCAA
GCGTTAAACTTTACATCAGAAATTATTAAAAAGCCTTTCTCTGGTGTTTGCTGTATTCTC
TTAATGTCTGTGGTAAATAAAATATAAAGGTACATGCATCTTTATTGATTTTCTGGTTTT
CTTGTTTGCAGTCCATTTAAGTACAATTATAACTGAGTAGTGTTTTGGAGGGATAGGAAA
TAAAGTCATCTGACCATTTAATAATATGATGAATGTAACTGATGTAAATAATCCAACATA
TAATGAATAGCTCAATGTCTTAAAAAAGCATTGTTTGAAAAATTTGCATATTCCAGGGGA
ATAAAAATTTGGTAAACTTTAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|62751843|ref|NP_001015648.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|62751843|ref|NP_001015648.1|

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               1081-1260, gnl|bosTau2|chr13 (30448585-30448399)
               

               
               1081-1260, gnl|Hg17|chr4 (48703998-48704189)
               


               
               1264-1416, gnl|bosTau2|chr13 (30448557-30448398)
               

               
               1264-1416, gnl|Hg17|chr4 (48704024-48704190)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1081-1260, gnl|bosTau2|chr13 (30448585-30448399)
               

               
               1081-1260, gnl|Hg17|chr4 (48703998-48704189)
               


               
               1264-1416, gnl|bosTau2|chr13 (30448557-30448398)
               

               
               1264-1416, gnl|Hg17|chr4 (48704024-48704190)

Expressed library(ies): 56 entry(ies)

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Expressed library(ies): 56 entry(ies)

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               fco (1.72929)
               

               
               cbe (1.43541)
               

               
               sug (1.01833)
               

               
               fce (0.814775)
               

               
               ret (0.7724)
               

               
               ski (0.733676)
               

               
               mgp (0.692042)
               

               
               lyg (0.665513)
               

               
               fcc (0.593354)
               

               
               spc (0.566829)
               

               
               ova (0.516529)
               

               
               tbr (0.462535)
               

               
               ece (0.45861)
               

               
               isp (0.451128)
               

               
               lin (0.436808)
               

               
               lnt (0.426925)
               

               
               aor (0.390549)
               

               
               ldo (0.38801)
               

               
               thg (0.380373)
               

               
               sag (0.36543)
               

               
               pgl (0.35545)
               

               
               fhi (0.339155)
               

               
               vin (0.332557)
               

               
               cty (0.31224)
               

               
               sme (0.305437)
               

               
               fat (0.294855)
               

               
               cte (0.29274)
               

               
               spl (0.286369)
               

               
               hyp (0.285673)
               

               
               tra (0.246184)
               

               
               ebs (0.236602)
               

               
               pan (0.23596)
               

               
               ecc (0.23007)
               

               
               jca (0.22792)
               

               
               nep (0.183925)
               

               
               mgm (0.180343)
               

               
               sto (0.179824)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               cag (0.151194)
               

               
               lun (0.150489)
               

               
               liv (0.146284)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

Expressed library(ies): 56 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (1.72929)
               

               
               cbe (1.43541)
               

               
               sug (1.01833)
               

               
               fce (0.814775)
               

               
               ret (0.7724)
               

               
               ski (0.733676)
               

               
               mgp (0.692042)
               

               
               lyg (0.665513)
               

               
               fcc (0.593354)
               

               
               spc (0.566829)
               

               
               ova (0.516529)
               

               
               tbr (0.462535)
               

               
               ece (0.45861)
               

               
               isp (0.451128)
               

               
               lin (0.436808)
               

               
               lnt (0.426925)
               

               
               aor (0.390549)
               

               
               ldo (0.38801)
               

               
               thg (0.380373)
               

               
               sag (0.36543)
               

               
               pgl (0.35545)
               

               
               fhi (0.339155)
               

               
               vin (0.332557)
               

               
               cty (0.31224)
               

               
               sme (0.305437)
               

               
               fat (0.294855)
               

               
               cte (0.29274)
               

               
               spl (0.286369)
               

               
               hyp (0.285673)
               

               
               tra (0.246184)
               

               
               ebs (0.236602)
               

               
               pan (0.23596)
               

               
               ecc (0.23007)
               

               
               jca (0.22792)
               

               
               nep (0.183925)
               

               
               mgm (0.180343)
               

               
               sto (0.179824)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               cag (0.151194)
               

               
               lun (0.150489)
               

               
               liv (0.146284)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

	1081-1260, gnl\|bosTau2\|chr13 (30448585-30448399)
	1081-1260, gnl\|Hg17\|chr4 (48703998-48704189)

	1264-1416, gnl\|bosTau2\|chr13 (30448557-30448398)
	1264-1416, gnl\|Hg17\|chr4 (48704024-48704190)

	fco (1.72929)
	cbe (1.43541)
	sug (1.01833)
	fce (0.814775)
	ret (0.7724)
	ski (0.733676)
	mgp (0.692042)
	lyg (0.665513)
	fcc (0.593354)
	spc (0.566829)
	ova (0.516529)
	tbr (0.462535)
	ece (0.45861)
	isp (0.451128)
	lin (0.436808)
	lnt (0.426925)
	aor (0.390549)
	ldo (0.38801)
	thg (0.380373)
	sag (0.36543)
	pgl (0.35545)
	fhi (0.339155)
	vin (0.332557)
	cty (0.31224)
	sme (0.305437)
	fat (0.294855)
	cte (0.29274)
	spl (0.286369)
	hyp (0.285673)
	tra (0.246184)
	ebs (0.236602)
	pan (0.23596)
	ecc (0.23007)
	jca (0.22792)
	nep (0.183925)
	mgm (0.180343)
	sto (0.179824)
	fbs (0.175346)
	rec (0.17307)
	nje (0.16592)
	cje (0.165235)
	nco (0.161734)
	mga (0.160205)
	cag (0.151194)
	lun (0.150489)
	liv (0.146284)
	csk (0.140746)
	hlv (0.139256)
	che (0.136314)
	ssp (0.13552)
	nmm (0.132802)
	kid (0.129735)
	bla (0.124347)
	eru (0.120048)
	nbm (0.0993246)
	eje (0.0988338)