Non-Coding RNA Search

Ss1.1-Thy1-THY010012D11.5

Sequence:


               
               TCTCTCCTCCTCTCTATTCCCAACGATTGCAGACAGCACCCCCCTCAGAGCACCACCCCC
ACCCCCCTCTTAGCTGTGCTGCACCGTGCCTAGCAGCAGCTTCTCGTATGGAGGTGGAAT
GTCAGGCCTAGACCCAGCCAGGGTCAGGTGCGCAGTCAGTGGGCATCCTGCTCCCATGCG
TAGCTGCGAAGCAGGTGACTGCCGTGATGTGCAGCATCTAGAAAAGGCCGTCCGGTATTA
GATGAGTGCTGCTGGAAAGGTTTGCTCGCTTCTCTCTTTTGATCATTAATTTTTTATACG
GACACATACATAATTCCAAAAGTGAATGCTTTCAACTTTTTATTTTCAGAAAAGTGTTTT
TAATTAAAAATATGTGGTAGGGATCAGTGAATAAAGTATACTTAATTTGAGGTAGAAGAG
CTGAACCAAGAGGTATCTTATTAAAGAAACCTGATCTGATTGTGCAGAGCACATATATGA
AGAAATATGTAAGCCGGTAGGGTGGGTCAGAGGGTCAGGATCAATACGAGATGATGTGAT
GTTGAAAACGTTCTGAAAGACAACTGTTTTTATGGTTGTTTTTTTTTTTCCCCCCAACTA
AACTACCATGTTCTACAAGAAGTTGGTTTCATAATGGTGCATTGCTGAATCATCAATTAA
ATGATTTTAGTTGCTTCGGATTTTAGTCTTAGGTTTTAACAACTCTTGAGCTTTCCCACC
CTCATGTTTCATTTCTTTTTTTAAGGTGAACTATCAACCTTTAAAAATTTTTTTAGATTT
AGAATTGATAAGTTATAGTCTGTTGTAAGCCATTGTCCTGTTAGCAGAGCTAATGTTTGG
TCTTGGACAGCCTGACTTCCATGCTCTTTTGATCTGGTGGAGCCTGTACACAAGCCTCAG
TGTCTCCGGCAACCTGTGTCCCTGTGACGTGCACATAGAAAGACACTCTGCTTCCGGACG
GCCCTTTGTGGTCCACAGTTGCTTACTCAGGGGTTCATAATAGTGACATAAAAATACCGC
CAGCTGTCTAATAGTATTTTAAGACTGCTTGTCTGTTACAAGGGTGTTAGGGTTCTTTCA
GCAATTCCACGAACATACTGTCCACTAGACCTCTGGAAATGTCCCCAGCCCCATCCTGGC
TTGGGCAGTGGCCTGTGTACAGAGGCCATCTGCGTGCTTTCGCGTGGCACTGCCTCATCA
GGGCACTGGGGGTCCCACGAAGCATCGTCAGTGGAACGGTTGCCGCAGGCTTTGATCTGT
CTTCCCCACTGTTATACAGCCTTTCACTAAAAGGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTCTCCTCCTCTCTATTCCCAACGATTGCAGACAGCACCCCCCTCAGAGCACCACCCCC
ACCCCCCTCTTAGCTGTGCTGCACCGTGCCTAGCAGCAGCTTCTCGTATGGAGGTGGAAT
GTCAGGCCTAGACCCAGCCAGGGTCAGGTGCGCAGTCAGTGGGCATCCTGCTCCCATGCG
TAGCTGCGAAGCAGGTGACTGCCGTGATGTGCAGCATCTAGAAAAGGCCGTCCGGTATTA
GATGAGTGCTGCTGGAAAGGTTTGCTCGCTTCTCTCTTTTGATCATTAATTTTTTATACG
GACACATACATAATTCCAAAAGTGAATGCTTTCAACTTTTTATTTTCAGAAAAGTGTTTT
TAATTAAAAATATGTGGTAGGGATCAGTGAATAAAGTATACTTAATTTGAGGTAGAAGAG
CTGAACCAAGAGGTATCTTATTAAAGAAACCTGATCTGATTGTGCAGAGCACATATATGA
AGAAATATGTAAGCCGGTAGGGTGGGTCAGAGGGTCAGGATCAATACGAGATGATGTGAT
GTTGAAAACGTTCTGAAAGACAACTGTTTTTATGGTTGTTTTTTTTTTTCCCCCCAACTA
AACTACCATGTTCTACAAGAAGTTGGTTTCATAATGGTGCATTGCTGAATCATCAATTAA
ATGATTTTAGTTGCTTCGGATTTTAGTCTTAGGTTTTAACAACTCTTGAGCTTTCCCACC
CTCATGTTTCATTTCTTTTTTTAAGGTGAACTATCAACCTTTAAAAATTTTTTTAGATTT
AGAATTGATAAGTTATAGTCTGTTGTAAGCCATTGTCCTGTTAGCAGAGCTAATGTTTGG
TCTTGGACAGCCTGACTTCCATGCTCTTTTGATCTGGTGGAGCCTGTACACAAGCCTCAG
TGTCTCCGGCAACCTGTGTCCCTGTGACGTGCACATAGAAAGACACTCTGCTTCCGGACG
GCCCTTTGTGGTCCACAGTTGCTTACTCAGGGGTTCATAATAGTGACATAAAAATACCGC
CAGCTGTCTAATAGTATTTTAAGACTGCTTGTCTGTTACAAGGGTGTTAGGGTTCTTTCA
GCAATTCCACGAACATACTGTCCACTAGACCTCTGGAAATGTCCCCAGCCCCATCCTGGC
TTGGGCAGTGGCCTGTGTACAGAGGCCATCTGCGTGCTTTCGCGTGGCACTGCCTCATCA
GGGCACTGGGGGTCCCACGAAGCATCGTCAGTGGAACGGTTGCCGCAGGCTTTGATCTGT
CTTCCCCACTGTTATACAGCCTTTCACTAAAAGGAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               166-1211, gnl|bosTau2|chr12 (19830108-19831101)
               

               
               166-1211, gnl|Hg17|chr7 (29895333-29896401)
               

               
               166-1211, gnl|Mm7|chr6 (54607258-54608129)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               166-1211, gnl|bosTau2|chr12 (19830108-19831101)
               

               
               166-1211, gnl|Hg17|chr7 (29895333-29896401)
               

               
               166-1211, gnl|Mm7|chr6 (54607258-54608129)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               lnt (0.142308)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               med (0.116252)
               

               
               spc (0.113366)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lnt (0.142308)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               med (0.116252)
               

               
               spc (0.113366)

	166-1211, gnl\|bosTau2\|chr12 (19830108-19831101)
	166-1211, gnl\|Hg17\|chr7 (29895333-29896401)
	166-1211, gnl\|Mm7\|chr6 (54607258-54608129)

	lnt (0.142308)
	thg (0.126791)
	ese (0.126502)
	med (0.116252)
	spc (0.113366)