Ss1.1-Thy1-THY010012E01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGCCTTCCCTTTCCTCGCCTCTCGTTTCCCCCCTCCCATCCCGTTTCCTCGGCCGCTCC GCTCCCTGGCGTGACTCGGCACTGAGAGCCCCGGGAGAAGACGCCACGGTCGCCACCTCC TGTGTCCAGGCCTCGGCCTTCCTGAGTCTACCCCCGTCCCCTCCCGGGTCGTCTTCTCCT TCAGTTTTGAAACCGGTGGCGTCGCGGCCACCTTGCCAGGCTCTCTGAGAATGGTAGGTG TAAAGCCGGTCGGGAGTGACCCGGATTTCCAGCCGGAGCTGAGCGGCGCGGGCTCCAGAC TCGCTGTGGTCAAATTCACCATGCGAGGGTGTGGACCATGTTTAAGGATTGCCCCAGCAT TCAGTTCTATGAGTAATAAGTATCCACAAGCAGTTTTCTTGGAAGTAGATGTACATCAGT GTCAGGGAACTGCTGCCACCAACAACATATCAGCGACACCTACATTTTTGTTTTTCCGAA ACAAAGTGAGAATTGATCAGTATCAAGGAGCAGATGCCGTGGGATTAGAAGAAAAAATCA AGCAGCACTTAGAAAACGACCCTGGAAGCAATGAGGACACAGATATTCCAAAAGGCTATA TGGATTTAATGCCTTTTATTAACAAAGCTGGCTGTGAATGTCTTAATGAAAGTGACGAGC ATGGATTTGACAACTGTTTACGAAAAGACATGACCTTCCTGGAATCTGATTGTGATGAAC AGCTACTTATTACTGTGGCATTCAATCAGCCTGTTAAGCTTTACTCAATGAAATTTCAAG GGCCAGATAATGGTCAGGGTCCTAAATATGTAAAAATTTTTATCAATCTACCCCGATCTA TGGATTTTGAAGAGGCAGAAAGAAGCGAACCAACTCAAGCTCTGGAACTAACAGAGGATG ATATTAAAGAAGATGGTATTGTTCCACTTCGTTATGTTAAGTTTCAGAATGTTAACAGTG TAACTATATTTGTTCAGTCCAATCAAGGTGAAGAAGAAACAACAAGAATTTCATATTTTA CTTTTATTGGGACTCCGGTCCAGGCAACAAATATGAATGACTTCAAACGAGTAGTTGGCA AAAAAGGAGAAAGCCACTGAGGTACAAAAGACACTGGAAGACCGTATTGCAATCAGATCT ACAGCTCCTGGATAATTGCTTGATTCTCGCCAGAGACTTTTCAATATTTCATTCATTGCC ATTACCAATAAATCATTGCTTTTGTTCGGATGGTATCACTAGTGTTTCTATTGTAATCTT GATACATGCAGTTGTAAATAAAAGTAATAACTACTTTTGCCAAGCTTAATTTTTGTCATT CTAAAGTAAGTGTTTTCCCTTTATATATATTTGAAAATTGGCCACCTTCTGATTATAGTA GAGACTTAAGTATCTGGTCACATATTGATCAAAAGCCAGTTTCTCTCTTTAGAGGAGAAC TATTCTGGGGAATTAAGGAGTGCATGCGCGTTCCTGTGCACACACACAAAGCAAGTAGTT TTGTTAAGTGGACTTGGAACGGATCCATGTTCAGATGAGTACAACTCGTGTGTTTGTTAG ACAGCATTTGGATATCTGGGCTGTATAAATTACTCAAATTATAAATGATCAGAAATAAGT TTATTAAGATTTAACTGTTCTCACCTAAAATTGTTAGTTAATGGGACCACCAATTTTAAA CCCTTCTGGATAAACTTTTAGAATTTGATTCAGCTATTTTCTGTACTAATAAAGGTATGT TGAAATCCGACAGGGAAAAACATAGTGCTCAGAATTCCTGAAGCAATAGGAATTGGTATC TTTCAATCAAGTGTTTATTATTTTAATTACCAGAAGATACAGTGTAAATATACAGAGAAC ATGATTTAATGTTGAAAATGAATTGGCCAAATGTGTTTTAGAGATCTTTCATAAAAGGCT GGCAAAACAAAGCATCTGTTCTTTATTTTTTAAATCTTAAAACTGTAATCTAGAAAGTAT TGATGAATTTGATTTTTTAATTTTTCTGTTTTTAAAATTAATTTTAAATTTCAGTGTTTT AAAAATTCAGTGTTTGACAAGATAACATAAGACTTAATTTTGATTCAGTTAATTAAATAA TTTGAGGGCATATTTGTCTAGGACTATAGTCAAGATACTAATTAGCCTTTGAGACACCAA CGTATTTATACATGTTTCTGAAAAAAATCATGCACAGTTTTTGTGTTAAAATCGTCACTT TCTGAAACCCCCTGTGTCATTACATAATGTTTAGTTCCTTTGTATGTAAGCATATTAACT GGTCTATGGTGATGTCTGTGTATCTTATGTATTTCATGGTTATGTTGCCTTGGGTCAGGT GGAAGCAGAAGGTCAAGAAATAAAATAAAAGTTTATAACACTCCTTAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGCCTTCCCTTTCCTCGCCTCTCGTTTCCCCCCTCCCATCCCGTTTCCTCGGCCGCTCC GCTCCCTGGCGTGACTCGGCACTGAGAGCCCCGGGAGAAGACGCCACGGTCGCCACCTCC TGTGTCCAGGCCTCGGCCTTCCTGAGTCTACCCCCGTCCCCTCCCGGGTCGTCTTCTCCT TCAGTTTTGAAACCGGTGGCGTCGCGGCCACCTTGCCAGGCTCTCTGAGAATGGTAGGTG TAAAGCCGGTCGGGAGTGACCCGGATTTCCAGCCGGAGCTGAGCGGCGCGGGCTCCAGAC TCGCTGTGGTCAAATTCACCATGCGAGGGTGTGGACCATGTTTAAGGATTGCCCCAGCAT TCAGTTCTATGAGTAATAAGTATCCACAAGCAGTTTTCTTGGAAGTAGATGTACATCAGT GTCAGGGAACTGCTGCCACCAACAACATATCAGCGACACCTACATTTTTGTTTTTCCGAA ACAAAGTGAGAATTGATCAGTATCAAGGAGCAGATGCCGTGGGATTAGAAGAAAAAATCA AGCAGCACTTAGAAAACGACCCTGGAAGCAATGAGGACACAGATATTCCAAAAGGCTATA TGGATTTAATGCCTTTTATTAACAAAGCTGGCTGTGAATGTCTTAATGAAAGTGACGAGC ATGGATTTGACAACTGTTTACGAAAAGACATGACCTTCCTGGAATCTGATTGTGATGAAC AGCTACTTATTACTGTGGCATTCAATCAGCCTGTTAAGCTTTACTCAATGAAATTTCAAG GGCCAGATAATGGTCAGGGTCCTAAATATGTAAAAATTTTTATCAATCTACCCCGATCTA TGGATTTTGAAGAGGCAGAAAGAAGCGAACCAACTCAAGCTCTGGAACTAACAGAGGATG ATATTAAAGAAGATGGTATTGTTCCACTTCGTTATGTTAAGTTTCAGAATGTTAACAGTG TAACTATATTTGTTCAGTCCAATCAAGGTGAAGAAGAAACAACAAGAATTTCATATTTTA CTTTTATTGGGACTCCGGTCCAGGCAACAAATATGAATGACTTCAAACGAGTAGTTGGCA AAAAAGGAGAAAGCCACTGAGGTACAAAAGACACTGGAAGACCGTATTGCAATCAGATCT ACAGCTCCTGGATAATTGCTTGATTCTCGCCAGAGACTTTTCAATATTTCATTCATTGCC ATTACCAATAAATCATTGCTTTTGTTCGGATGGTATCACTAGTGTTTCTATTGTAATCTT GATACATGCAGTTGTAAATAAAAGTAATAACTACTTTTGCCAAGCTTAATTTTTGTCATT CTAAAGTAAGTGTTTTCCCTTTATATATATTTGAAAATTGGCCACCTTCTGATTATAGTA GAGACTTAAGTATCTGGTCACATATTGATCAAAAGCCAGTTTCTCTCTTTAGAGGAGAAC TATTCTGGGGAATTAAGGAGTGCATGCGCGTTCCTGTGCACACACACAAAGCAAGTAGTT TTGTTAAGTGGACTTGGAACGGATCCATGTTCAGATGAGTACAACTCGTGTGTTTGTTAG ACAGCATTTGGATATCTGGGCTGTATAAATTACTCAAATTATAAATGATCAGAAATAAGT TTATTAAGATTTAACTGTTCTCACCTAAAATTGTTAGTTAATGGGACCACCAATTTTAAA CCCTTCTGGATAAACTTTTAGAATTTGATTCAGCTATTTTCTGTACTAATAAAGGTATGT TGAAATCCGACAGGGAAAAACATAGTGCTCAGAATTCCTGAAGCAATAGGAATTGGTATC TTTCAATCAAGTGTTTATTATTTTAATTACCAGAAGATACAGTGTAAATATACAGAGAAC ATGATTTAATGTTGAAAATGAATTGGCCAAATGTGTTTTAGAGATCTTTCATAAAAGGCT GGCAAAACAAAGCATCTGTTCTTTATTTTTTAAATCTTAAAACTGTAATCTAGAAAGTAT TGATGAATTTGATTTTTTAATTTTTCTGTTTTTAAAATTAATTTTAAATTTCAGTGTTTT AAAAATTCAGTGTTTGACAAGATAACATAAGACTTAATTTTGATTCAGTTAATTAAATAA TTTGAGGGCATATTTGTCTAGGACTATAGTCAAGATACTAATTAGCCTTTGAGACACCAA CGTATTTATACATGTTTCTGAAAAAAATCATGCACAGTTTTTGTGTTAAAATCGTCACTT TCTGAAACCCCCTGTGTCATTACATAATGTTTAGTTCCTTTGTATGTAAGCATATTAACT GGTCTATGGTGATGTCTGTGTATCTTATGTATTTCATGGTTATGTTGCCTTGGGTCAGGT GGAAGCAGAAGGTCAAGAAATAAAATAAAAGTTTATAACACTCCTTAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 792-911, - strand, RNAz p=0.589338 | |
| 1132-1242, + strand, RNAz p=0.904318 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 792-911, - strand, RNAz p=0.589338 | |
| 1132-1242, + strand, RNAz p=0.904318 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 424-599, gnl|bosTau2|chr24 (41477860-41477685) | |
| 424-599, gnl|Hg17|chr18 (52442692-52442517) | |
| 424-599, gnl|Mm7|chr18 (64068818-64068643) | |
| 600-725, gnl|bosTau2|chr24 (41460200-41460075) | |
| 600-725, gnl|canFam2|chr1 (22199134-22198981) | |
| 600-725, gnl|dasNov1|scaffold_316 (211011-211144) | |
| 600-725, gnl|echTel1|scaffold_301797 (99795-99950) | |
| 600-725, gnl|fr1|chrUn (322610364-322610228) | |
| 600-725, gnl|galGal2|chrUn (4959370-4959523) | |
| 600-725, gnl|hg17|chr18 (52436214-52436367) | |
| 600-725, gnl|Hg17|chr18 (52436355-52436230) | |
| 600-725, gnl|loxAfr1|scaffold_4668 (83991-84129) | |
| 600-725, gnl|mm7|chr18 (64066149-64066303) | |
| 600-725, gnl|Mm7|chr18 (64066291-64066166) | |
| 600-725, gnl|monDom2|scaffold_20 (46132383-46132228) | |
| 600-725, gnl|oryCun1|scaffold_204137 (156159-156313) | |
| 600-725, gnl|panTro1|chr17 (49310985-49311139) | |
| 600-725, gnl|rheMac2|chr18 (49877706-49877859) | |
| 600-725, gnl|rn3|chr18 (59909628-59909781) | |
| 600-725, gnl|tetNig1|chrUn_random (82548832-82548693) | |
| 600-725, gnl|xenTro1|scaffold_431 (541566-541430) | |
| 792-964, gnl|bosTau2|chr24 (41456550-41456378) | |
| 792-964, gnl|canFam2|chr1 (22202867-22202649) | |
| 792-964, gnl|danRer3|chrNA (188858077-188857897) | |
| 792-964, gnl|dasNov1|scaffold_94053 (3615-3400) | |
| 792-964, gnl|echTel1|scaffold_301797 (95943-96157) | |
| 792-964, gnl|fr1|chrUn (322610949-322610756) | |
| 792-964, gnl|galGal2|chrUn (4958150-4958353) | |
| 792-964, gnl|hg17|chr18 (52432648-52432863) | |
| 792-964, gnl|Hg17|chr18 (52432826-52432654) | |
| 792-964, gnl|loxAfr1|scaffold_34856 (3692-3910) | |
| 792-964, gnl|mm7|chr18 (64063334-64063551) | |
| 792-964, gnl|Mm7|chr18 (64063512-64063340) | |
| 792-964, gnl|monDom2|scaffold_20 (46143914-46143706) | |
| 792-964, gnl|oryCun1|scaffold_204137 (151496-151710) | |
| 792-964, gnl|panTro1|chr17 (49307404-49307619) | |
| 792-964, gnl|rheMac2|chr18 (49874124-49874339) | |
| 792-964, gnl|rn3|chr18 (59906447-59906669) | |
| 792-964, gnl|tetNig1|chrUn_random (82549269-82549090) | |
| 792-964, gnl|xenTro1|scaffold_431 (544867-544655) | |
| 974-1281, gnl|bosTau2|chr14 (21000434-21000744) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 424-599, gnl|bosTau2|chr24 (41477860-41477685) | |
| 424-599, gnl|Hg17|chr18 (52442692-52442517) | |
| 424-599, gnl|Mm7|chr18 (64068818-64068643) | |
| 600-725, gnl|bosTau2|chr24 (41460200-41460075) | |
| 600-725, gnl|canFam2|chr1 (22199134-22198981) | |
| 600-725, gnl|dasNov1|scaffold_316 (211011-211144) | |
| 600-725, gnl|echTel1|scaffold_301797 (99795-99950) | |
| 600-725, gnl|fr1|chrUn (322610364-322610228) | |
| 600-725, gnl|galGal2|chrUn (4959370-4959523) | |
| 600-725, gnl|hg17|chr18 (52436214-52436367) | |
| 600-725, gnl|Hg17|chr18 (52436355-52436230) | |
| 600-725, gnl|loxAfr1|scaffold_4668 (83991-84129) | |
| 600-725, gnl|mm7|chr18 (64066149-64066303) | |
| 600-725, gnl|Mm7|chr18 (64066291-64066166) | |
| 600-725, gnl|monDom2|scaffold_20 (46132383-46132228) | |
| 600-725, gnl|oryCun1|scaffold_204137 (156159-156313) | |
| 600-725, gnl|panTro1|chr17 (49310985-49311139) | |
| 600-725, gnl|rheMac2|chr18 (49877706-49877859) | |
| 600-725, gnl|rn3|chr18 (59909628-59909781) | |
| 600-725, gnl|tetNig1|chrUn_random (82548832-82548693) | |
| 600-725, gnl|xenTro1|scaffold_431 (541566-541430) | |
| 792-964, gnl|bosTau2|chr24 (41456550-41456378) | |
| 792-964, gnl|canFam2|chr1 (22202867-22202649) | |
| 792-964, gnl|danRer3|chrNA (188858077-188857897) | |
| 792-964, gnl|dasNov1|scaffold_94053 (3615-3400) | |
| 792-964, gnl|echTel1|scaffold_301797 (95943-96157) | |
| 792-964, gnl|fr1|chrUn (322610949-322610756) | |
| 792-964, gnl|galGal2|chrUn (4958150-4958353) | |
| 792-964, gnl|hg17|chr18 (52432648-52432863) | |
| 792-964, gnl|Hg17|chr18 (52432826-52432654) | |
| 792-964, gnl|loxAfr1|scaffold_34856 (3692-3910) | |
| 792-964, gnl|mm7|chr18 (64063334-64063551) | |
| 792-964, gnl|Mm7|chr18 (64063512-64063340) | |
| 792-964, gnl|monDom2|scaffold_20 (46143914-46143706) | |
| 792-964, gnl|oryCun1|scaffold_204137 (151496-151710) | |
| 792-964, gnl|panTro1|chr17 (49307404-49307619) | |
| 792-964, gnl|rheMac2|chr18 (49874124-49874339) | |
| 792-964, gnl|rn3|chr18 (59906447-59906669) | |
| 792-964, gnl|tetNig1|chrUn_random (82549269-82549090) | |
| 792-964, gnl|xenTro1|scaffold_431 (544867-544655) | |
| 974-1281, gnl|bosTau2|chr14 (21000434-21000744) |
| Expressed library(ies): 38 entry(ies) | More info |
| Expressed library(ies): 38 entry(ies) | Help | Less info |
| clu (1.43575) | |
| amn (0.835422) | |
| liv (0.731422) | |
| lin (0.728014) | |
| mgp (0.692042) | |
| fcc (0.593354) | |
| bfe (0.449573) | |
| ret (0.3862) | |
| thg (0.380373) | |
| tra (0.369276) | |
| rec (0.346141) | |
| cbl (0.344392) | |
| fhi (0.339155) | |
| nco (0.323468) | |
| csp (0.322373) | |
| mga (0.32041) | |
| hyp (0.285673) | |
| kid (0.259471) | |
| bla (0.248694) | |
| ebs (0.236602) | |
| jca (0.22792) | |
| hea (0.204499) | |
| fty (0.17584) | |
| eli (0.151814) | |
| isp (0.150376) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| ssp (0.13552) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| ova (0.129132) | |
| sug (0.127291) | |
| pgl (0.118483) | |
| med (0.116252) | |
| spc (0.113366) | |
| nbm (0.0993246) | |
| jej (0.0989218) | |
| ldo (0.0970026) |
| Expressed library(ies): 38 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (1.43575) | |
| amn (0.835422) | |
| liv (0.731422) | |
| lin (0.728014) | |
| mgp (0.692042) | |
| fcc (0.593354) | |
| bfe (0.449573) | |
| ret (0.3862) | |
| thg (0.380373) | |
| tra (0.369276) | |
| rec (0.346141) | |
| cbl (0.344392) | |
| fhi (0.339155) | |
| nco (0.323468) | |
| csp (0.322373) | |
| mga (0.32041) | |
| hyp (0.285673) | |
| kid (0.259471) | |
| bla (0.248694) | |
| ebs (0.236602) | |
| jca (0.22792) | |
| hea (0.204499) | |
| fty (0.17584) | |
| eli (0.151814) | |
| isp (0.150376) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| ssp (0.13552) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| ova (0.129132) | |
| sug (0.127291) | |
| pgl (0.118483) | |
| med (0.116252) | |
| spc (0.113366) | |
| nbm (0.0993246) | |
| jej (0.0989218) | |
| ldo (0.0970026) |