Ss1.1-Thy1-THY010012H04.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGATTCGCGCGGCAGCCCCAGTCTTAAGTGCGCAATTCTCCTGCCTGAGTGAAAGCTCCA CACAGCCACCACTGCCCTTCGGAATGGCCAACAGGGGACCTGCCTATGGTCTGAGCCGGG AGGTGCAGCAGAAGATTGAGAAACAATACGATGCAGATCTGGAGCAGATCCTGATCCAGT GGATCACTACCCAGTGCCGCAAGGATGTGGGCCGGCCCCAGCCTGGGCGCGAAAACTTTC AGAACTGGCTCAAGGACGGCACGGTGCTGTGTGAGCTTATTAATGGGCTGTACCCCGAGG GGCAGGCCCCCGTGAAGAAGATCCAGGCCTCCACCATGGCCTTCAAGCAGATGGAACAGA TCTCCCAGTTCCTGCAAGCAGCCGAGCGCTATGGCATCAACACCACCGACATCTTCCAGA CTGTGGACCTCTGGGAAGGAAAGAACATGGCCTGTGTGCAGCGGACGCTGATGAACCTGG GCGGGCTAGCGGTAGCCCGGGATGATGGGCTCTTTTCCGGGGATCCCAACTGGTTTCCCA AGAAATCTAAGGAAAACCCCCGGAACTTCTCCGACAACCAGCTGCAGGAGGGCAAGAATG TGATCGGGTTGCAGATGGGGACCAACCGCGGGGCATCCCAGGCAGGCATGACCGGCTATG GCATGCCACGCCAGATCCTCTGATCCTGCCCACAGCCCTGCCCCCGCCCGCCGTGAATGG TTAATATATATATATATTTTAGCAATGACATTCCCCGAGAGCCCCGGGAGCTCTCACACT CCCGCCTGCCAGGGTGGGGGCCTGGCCTGTCTCCTCTTGGGGTGCCCGGCGGTGGCCTCT CCCCTGTGCTTTACTAATACATTCCTTTCTCCAGACCCACCAGAACTGGACCAATGGACT TTTTTCCCTGGGACCAAAACTGAGGGGTGGGGGTTGCTCGCCCCATGCCCCTCTCCCCAC CAAGCCTCTTCTCTTTTTCTCGGGCTTCCCCCCCACCACCCCAGCCCCAATAACCCGGGC TCTGTGCCTTAGTCTGTTCCTTGGCTAGGGGTCAAGGATGCTGCCTAATGGCCCTCTCCC CACAAGTATGCCTCGCCCGCAGCCGTGGCTGCAGGGACTTAATCTCTAGGGAGGGGCTGT GGCAGCTGCCACCCCAGCCCAGCTGGACTGCACTCACCACAGTTCTGGGGCAGCTTGCCC CGAGAGAGGTCCTCTGGCTTCTCATTTTCCATTCCTCTCGCCCAGCTAAGGGGTAGGGGT GAGGGGACTGGGGAGGGAGGGTTGCCCACTGCGGGCTGGGGCTTGAAGAACCTGAGTTTG CTGATTTAAATAAAGAATCTCTGTCTTTTTTGAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGATTCGCGCGGCAGCCCCAGTCTTAAGTGCGCAATTCTCCTGCCTGAGTGAAAGCTCCA CACAGCCACCACTGCCCTTCGGAATGGCCAACAGGGGACCTGCCTATGGTCTGAGCCGGG AGGTGCAGCAGAAGATTGAGAAACAATACGATGCAGATCTGGAGCAGATCCTGATCCAGT GGATCACTACCCAGTGCCGCAAGGATGTGGGCCGGCCCCAGCCTGGGCGCGAAAACTTTC AGAACTGGCTCAAGGACGGCACGGTGCTGTGTGAGCTTATTAATGGGCTGTACCCCGAGG GGCAGGCCCCCGTGAAGAAGATCCAGGCCTCCACCATGGCCTTCAAGCAGATGGAACAGA TCTCCCAGTTCCTGCAAGCAGCCGAGCGCTATGGCATCAACACCACCGACATCTTCCAGA CTGTGGACCTCTGGGAAGGAAAGAACATGGCCTGTGTGCAGCGGACGCTGATGAACCTGG GCGGGCTAGCGGTAGCCCGGGATGATGGGCTCTTTTCCGGGGATCCCAACTGGTTTCCCA AGAAATCTAAGGAAAACCCCCGGAACTTCTCCGACAACCAGCTGCAGGAGGGCAAGAATG TGATCGGGTTGCAGATGGGGACCAACCGCGGGGCATCCCAGGCAGGCATGACCGGCTATG GCATGCCACGCCAGATCCTCTGATCCTGCCCACAGCCCTGCCCCCGCCCGCCGTGAATGG TTAATATATATATATATTTTAGCAATGACATTCCCCGAGAGCCCCGGGAGCTCTCACACT CCCGCCTGCCAGGGTGGGGGCCTGGCCTGTCTCCTCTTGGGGTGCCCGGCGGTGGCCTCT CCCCTGTGCTTTACTAATACATTCCTTTCTCCAGACCCACCAGAACTGGACCAATGGACT TTTTTCCCTGGGACCAAAACTGAGGGGTGGGGGTTGCTCGCCCCATGCCCCTCTCCCCAC CAAGCCTCTTCTCTTTTTCTCGGGCTTCCCCCCCACCACCCCAGCCCCAATAACCCGGGC TCTGTGCCTTAGTCTGTTCCTTGGCTAGGGGTCAAGGATGCTGCCTAATGGCCCTCTCCC CACAAGTATGCCTCGCCCGCAGCCGTGGCTGCAGGGACTTAATCTCTAGGGAGGGGCTGT GGCAGCTGCCACCCCAGCCCAGCTGGACTGCACTCACCACAGTTCTGGGGCAGCTTGCCC CGAGAGAGGTCCTCTGGCTTCTCATTTTCCATTCCTCTCGCCCAGCTAAGGGGTAGGGGT GAGGGGACTGGGGAGGGAGGGTTGCCCACTGCGGGCTGGGGCTTGAAGAACCTGAGTTTG CTGATTTAAATAAAGAATCTCTGTCTTTTTTGAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 471-1308, - strand, RNAz p=0.998244 | |
| 696-841, - strand, RNAz p=0.98405 | |
| 873-985, + strand, RNAz p=0.994426 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 471-1308, - strand, RNAz p=0.998244 | |
| 696-841, - strand, RNAz p=0.98405 | |
| 873-985, + strand, RNAz p=0.994426 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 2-993, gnl|bosTau2|chr11 (84892217-84893210) | |
| 2-993, gnl|Hg17|chr8 (107779503-107778502) | |
| 2-993, gnl|Mm7|chr1 (172475305-172477212) | |
| 1019-1347, gnl|bosTau2|chr11 (84893216-84893545) | |
| 1019-1347, gnl|canFam2|chr38 (25242314-25242066) | |
| 1019-1347, gnl|canFam2|chr38 (25241841-25242301) | |
| 1019-1347, gnl|dasNov1|scaffold_208933 (3613-3873) | |
| 1019-1347, gnl|dasNov1|scaffold_208933 (4087-3627) | |
| 1019-1347, gnl|echTel1|scaffold_325198 (40352-40597) | |
| 1019-1347, gnl|echTel1|scaffold_325198 (40806-40366) | |
| 1019-1347, gnl|hg17|chr1 (167953192-167953673) | |
| 1019-1347, gnl|hg17|chr8 (30224982-30225260) | |
| 1019-1347, gnl|Hg17|chr8 (107778496-107778148) | |
| 1019-1347, gnl|loxAfr1|scaffold_30056 (4518-4256) | |
| 1019-1347, gnl|loxAfr1|scaffold_30056 (4051-4504) | |
| 1019-1347, gnl|mm7|chr1 (172477537-172477295) | |
| 1019-1347, gnl|mm7|chr1 (172477042-172477521) | |
| 1019-1347, gnl|Mm7|chr1 (172477214-172477541) | |
| 1019-1347, gnl|monDom2|scaffold_13 (61788735-61788383) | |
| 1019-1347, gnl|monDom2|scaffold_13 (61788152-61788712) | |
| 1019-1347, gnl|oryCun1|scaffold_211351 (45115-45358) | |
| 1019-1347, gnl|oryCun1|scaffold_211351 (45581-45129) | |
| 1019-1347, gnl|panTro1|chr1_random (31612209-31611728) | |
| 1019-1347, gnl|panTro1|chr7 (31290859-31291126) | |
| 1019-1347, gnl|rheMac2|chr1 (200967166-200967647) | |
| 1019-1347, gnl|rheMac2|chr8 (30486004-30486241) | |
| 1019-1347, gnl|rn3|chr13 (88701045-88700801) | |
| 1019-1347, gnl|rn3|chr13 (88700577-88701035) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-993, gnl|bosTau2|chr11 (84892217-84893210) | |
| 2-993, gnl|Hg17|chr8 (107779503-107778502) | |
| 2-993, gnl|Mm7|chr1 (172475305-172477212) | |
| 1019-1347, gnl|bosTau2|chr11 (84893216-84893545) | |
| 1019-1347, gnl|canFam2|chr38 (25242314-25242066) | |
| 1019-1347, gnl|canFam2|chr38 (25241841-25242301) | |
| 1019-1347, gnl|dasNov1|scaffold_208933 (3613-3873) | |
| 1019-1347, gnl|dasNov1|scaffold_208933 (4087-3627) | |
| 1019-1347, gnl|echTel1|scaffold_325198 (40352-40597) | |
| 1019-1347, gnl|echTel1|scaffold_325198 (40806-40366) | |
| 1019-1347, gnl|hg17|chr1 (167953192-167953673) | |
| 1019-1347, gnl|hg17|chr8 (30224982-30225260) | |
| 1019-1347, gnl|Hg17|chr8 (107778496-107778148) | |
| 1019-1347, gnl|loxAfr1|scaffold_30056 (4518-4256) | |
| 1019-1347, gnl|loxAfr1|scaffold_30056 (4051-4504) | |
| 1019-1347, gnl|mm7|chr1 (172477537-172477295) | |
| 1019-1347, gnl|mm7|chr1 (172477042-172477521) | |
| 1019-1347, gnl|Mm7|chr1 (172477214-172477541) | |
| 1019-1347, gnl|monDom2|scaffold_13 (61788735-61788383) | |
| 1019-1347, gnl|monDom2|scaffold_13 (61788152-61788712) | |
| 1019-1347, gnl|oryCun1|scaffold_211351 (45115-45358) | |
| 1019-1347, gnl|oryCun1|scaffold_211351 (45581-45129) | |
| 1019-1347, gnl|panTro1|chr1_random (31612209-31611728) | |
| 1019-1347, gnl|panTro1|chr7 (31290859-31291126) | |
| 1019-1347, gnl|rheMac2|chr1 (200967166-200967647) | |
| 1019-1347, gnl|rheMac2|chr8 (30486004-30486241) | |
| 1019-1347, gnl|rn3|chr13 (88701045-88700801) | |
| 1019-1347, gnl|rn3|chr13 (88700577-88701035) |
| Expressed library(ies): 29 entry(ies) | More info |
| Expressed library(ies): 29 entry(ies) | Help | Less info |
| clu (2.15363) | |
| nlu (1.53345) | |
| pty (0.856287) | |
| jca (0.797721) | |
| cst (0.560146) | |
| nep (0.551775) | |
| cty (0.41632) | |
| ute (0.398353) | |
| jej (0.395687) | |
| ese (0.379507) | |
| eru (0.360144) | |
| mcp (0.341297) | |
| nco (0.323468) | |
| csp (0.322373) | |
| cag (0.302389) | |
| lnt (0.284616) | |
| nca (0.273748) | |
| med (0.232504) | |
| fty (0.17584) | |
| ill (0.175593) | |
| ton (0.1755) | |
| nje (0.16592) | |
| cli (0.152812) | |
| csk (0.140746) | |
| che (0.136314) | |
| nmm (0.132802) | |
| eep (0.122564) | |
| ebs (0.118301) | |
| eje (0.0988338) |
| Expressed library(ies): 29 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (2.15363) | |
| nlu (1.53345) | |
| pty (0.856287) | |
| jca (0.797721) | |
| cst (0.560146) | |
| nep (0.551775) | |
| cty (0.41632) | |
| ute (0.398353) | |
| jej (0.395687) | |
| ese (0.379507) | |
| eru (0.360144) | |
| mcp (0.341297) | |
| nco (0.323468) | |
| csp (0.322373) | |
| cag (0.302389) | |
| lnt (0.284616) | |
| nca (0.273748) | |
| med (0.232504) | |
| fty (0.17584) | |
| ill (0.175593) | |
| ton (0.1755) | |
| nje (0.16592) | |
| cli (0.152812) | |
| csk (0.140746) | |
| che (0.136314) | |
| nmm (0.132802) | |
| eep (0.122564) | |
| ebs (0.118301) | |
| eje (0.0988338) |