Ss1.1-Thy1-THY010012H06.5
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
ACCGAGCTCCTTTCTCTTCTCTCTTCGACTTGCTCACTCGCTCGCTCACCTCCCTCCTCG GCACCATGGCCACCTGCAGCCGCCAGTTCACCTCCTCCAGCTCCATGAAGGGCTCCTGTG GCATTGGCGGTGGCTCCAGCCGCATATCCTCCGTCCTGGGCGGAGGCTCCTACCGGGCCC CCAGCGCCTACGGGGGCCTGTCTGTCACCTCCTCCCGCTACTCCTCCGGAGGGGTCTGCG GGCTGGGGGGCGGCTACGGTGGCGGCTTCAGCAGCAGCAGCAGCTTCGGTGGGGCCCTGG GTAGCGGCTTCGGTGGAGGATATGGCGGTGGCCTTGGCGCCGGCTTCGGTGGTGGCTTCG GTGGTGGCTTCGGGGGTGGCTTCGGGGGTGGTGACGGGCTCCTGGTGGGCAGCGAGAAGG TGACCATGCAGAACCTCAACGACCGCCTGGCCTCCTACCTGGACAAGGTGCGCGCCCTGG AGGAGGCCAACGCCGACCTGGAGGTGAAGATCCGCGACTGGTACCAGAGGCAGCGGCCGG CTGAGTCCAAGGACTACAGCCCCTACTTCAAGACCATCGAGGACCTGCGGAACAAGATCC TCACGGCCACCGTGGACAACGCTAATGTCGTGCTGCAGATCGACAATGCCCGCCTGGCCG CTGATGACTTCCGCACCAAGTACGAGACGGAGCTGAACCTGCGCATGAGCGTGGAGGCCG ACATCAACGGGCTGCGCAGGGTGCTGGACGAGCTGACCCTGGCCAGAGCCGACCTGGAGA TGCAGATCGAGAGCCTCAAGGAGGAGCTGGCCTACCTCCGAAAGAACCACGAGGAGGAGA TGAACGCCCTGCGAGGCCAGGTGGGCGGGGACGTCAACGTGGAGATGGACGCCGCCCCCG GCGTGGACCTGAGCCGCATCCTGAACGAGATGCGCGACCAGTACGAGAAGATGGCCGAGA AGAACCGCAAGGATGCCGAGGACTGGTTCTTCAGCAAGACGGAGGAGCTGAACCGCGAGG TGGCCACCAACAGCGAGCTGGTGCAGAGCGGCAAGAGCGAGATCTCCGAGCTCCGGCGCA CCGTGCAGAACCTCGAGATCGAGCTGCAGTCCCAGCTCAGCATGAAAGCGTCTCTGGAGA ACAGCCTGGAGGAGACCAAAGGCCGCTACTGCATGCAGCTCGCCCAGATCCAGGAGCTGA TCAGTGGCGTGGAGGAGCAGCTGGCGCAGCTGCGCTGCGAGATGGAGCAACAGAACCAGG AATACAAGATCCTGCTGGACGTGAAGACGCGGCTGGAGCAGGAGATCGCCACCTACCGCC GCCTGCTGGAGGGCGAGGATGCCCACCTCTCTTCCTCGCAGTTCTCCTCTGGCTCTCAGT CATCCAGAGATGTGACCTCCACTCGCCAGATCCGCACCAAAGTCATGGACGTGCACGACG GCAAGGTGGTGTCTTCCCACGAGCAAGTCCTTCGCACCAAGAACTAAGGCCGCTCTGCAC AGCTCAGGCCTAGGAAGCCGCCCCCCCGCAGATGACACTGGGGGATCCCCTCTCCCCCCA CCTCGAGCACTTCATACCTGAGTCCAGTTTCACCCCTGCCCCTCCCAGCAATCAATAAAG CTTCATTCTGAGTTGCACAAAAAAAAAAAAAAAAAA |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
ACCGAGCTCCTTTCTCTTCTCTCTTCGACTTGCTCACTCGCTCGCTCACCTCCCTCCTCG GCACCATGGCCACCTGCAGCCGCCAGTTCACCTCCTCCAGCTCCATGAAGGGCTCCTGTG GCATTGGCGGTGGCTCCAGCCGCATATCCTCCGTCCTGGGCGGAGGCTCCTACCGGGCCC CCAGCGCCTACGGGGGCCTGTCTGTCACCTCCTCCCGCTACTCCTCCGGAGGGGTCTGCG GGCTGGGGGGCGGCTACGGTGGCGGCTTCAGCAGCAGCAGCAGCTTCGGTGGGGCCCTGG GTAGCGGCTTCGGTGGAGGATATGGCGGTGGCCTTGGCGCCGGCTTCGGTGGTGGCTTCG GTGGTGGCTTCGGGGGTGGCTTCGGGGGTGGTGACGGGCTCCTGGTGGGCAGCGAGAAGG TGACCATGCAGAACCTCAACGACCGCCTGGCCTCCTACCTGGACAAGGTGCGCGCCCTGG AGGAGGCCAACGCCGACCTGGAGGTGAAGATCCGCGACTGGTACCAGAGGCAGCGGCCGG CTGAGTCCAAGGACTACAGCCCCTACTTCAAGACCATCGAGGACCTGCGGAACAAGATCC TCACGGCCACCGTGGACAACGCTAATGTCGTGCTGCAGATCGACAATGCCCGCCTGGCCG CTGATGACTTCCGCACCAAGTACGAGACGGAGCTGAACCTGCGCATGAGCGTGGAGGCCG ACATCAACGGGCTGCGCAGGGTGCTGGACGAGCTGACCCTGGCCAGAGCCGACCTGGAGA TGCAGATCGAGAGCCTCAAGGAGGAGCTGGCCTACCTCCGAAAGAACCACGAGGAGGAGA TGAACGCCCTGCGAGGCCAGGTGGGCGGGGACGTCAACGTGGAGATGGACGCCGCCCCCG GCGTGGACCTGAGCCGCATCCTGAACGAGATGCGCGACCAGTACGAGAAGATGGCCGAGA AGAACCGCAAGGATGCCGAGGACTGGTTCTTCAGCAAGACGGAGGAGCTGAACCGCGAGG TGGCCACCAACAGCGAGCTGGTGCAGAGCGGCAAGAGCGAGATCTCCGAGCTCCGGCGCA CCGTGCAGAACCTCGAGATCGAGCTGCAGTCCCAGCTCAGCATGAAAGCGTCTCTGGAGA ACAGCCTGGAGGAGACCAAAGGCCGCTACTGCATGCAGCTCGCCCAGATCCAGGAGCTGA TCAGTGGCGTGGAGGAGCAGCTGGCGCAGCTGCGCTGCGAGATGGAGCAACAGAACCAGG AATACAAGATCCTGCTGGACGTGAAGACGCGGCTGGAGCAGGAGATCGCCACCTACCGCC GCCTGCTGGAGGGCGAGGATGCCCACCTCTCTTCCTCGCAGTTCTCCTCTGGCTCTCAGT CATCCAGAGATGTGACCTCCACTCGCCAGATCCGCACCAAAGTCATGGACGTGCACGACG GCAAGGTGGTGTCTTCCCACGAGCAAGTCCTTCGCACCAAGAACTAAGGCCGCTCTGCAC AGCTCAGGCCTAGGAAGCCGCCCCCCCGCAGATGACACTGGGGGATCCCCTCTCCCCCCA CCTCGAGCACTTCATACCTGAGTCCAGTTTCACCCCTGCCCCTCCCAGCAATCAATAAAG CTTCATTCTGAGTTGCACAAAAAAAAAAAAAAAAAA |
Coded protein: 1 entry(ies) | More info |
Predicted RNA structure(s): 2 entry(ies) | More info |
Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
123-528, - strand, RNAz p=0.782729 | |
1224-1339, + strand, RNAz p=0.642297 |
Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
123-528, - strand, RNAz p=0.782729 | |
1224-1339, + strand, RNAz p=0.642297 |
Aligned organism(s): 104 entry(ies) | More info |
Aligned organism(s): 104 entry(ies) | Help | Less info |
5-596, gnl|bosTau2|chr23 (370782-371384) | |
5-596, gnl|Hg17|chr17 (36996668-36996088) | |
5-596, gnl|Mm7|chr11 (100316553-100315952) | |
396-528, gnl|bosTau2|chr19 (33898622-33898754) | |
396-528, gnl|canFam2|chr9 (25228468-25228268) | |
396-528, gnl|danRer3|chr19 (1206200-1206388) | |
396-528, gnl|dasNov1|scaffold_5382 (5847-5647) | |
396-528, gnl|echTel1|scaffold_312304 (42611-42412) | |
396-528, gnl|fr1|chrUn (253379363-253379175) | |
396-528, gnl|galGal2|chr27_random (623015-622827) | |
396-528, gnl|hg17|chr17 (36191826-36192026) | |
396-528, gnl|Hg17|chr17 (36192040-36191908) | |
396-528, gnl|loxAfr1|scaffold_3749 (80210-80010) | |
396-528, gnl|mm7|chr11 (99459697-99459897) | |
396-528, gnl|Mm7|chr11 (99459911-99459779) | |
396-528, gnl|monDom2|scaffold_18 (50213893-50214093) | |
396-528, gnl|oryCun1|scaffold_203191 (2977-2777) | |
396-528, gnl|panTro1|chr19 (39439038-39439238) | |
396-528, gnl|rheMac2|chr16 (50899430-50899630) | |
396-528, gnl|rn3|chr10 (88267799-88267999) | |
396-528, gnl|tetNig1|chr18 (5134305-5134493) | |
396-528, gnl|xenTro1|scaffold_574 (218489-218289) | |
676-846, gnl|bosTau2|chr19 (33975611-33975780) | |
676-846, gnl|canFam2|chr9 (25297895-25297695) | |
676-846, gnl|danRer3|chr19 (1139167-1139356) | |
676-846, gnl|dasNov1|scaffold_5382 (70287-70088) | |
676-846, gnl|echTel1|scaffold_319302 (81644-81447) | |
676-846, gnl|fr1|chrUn (253387528-253387366) | |
676-846, gnl|galGal2|chr27_random (597743-597568) | |
676-846, gnl|hg17|chr17 (36110899-36111102) | |
676-846, gnl|Hg17|chr17 (36111078-36110909) | |
676-846, gnl|loxAfr1|scaffold_16243 (16635-16436) | |
676-846, gnl|mm7|chr11 (99391662-99391862) | |
676-846, gnl|Mm7|chr11 (99391841-99391672) | |
676-846, gnl|monDom2|scaffold_18 (50091983-50092164) | |
676-846, gnl|oryCun1|scaffold_185714 (147-346) | |
676-846, gnl|panTro1|chr19 (39357971-39358174) | |
676-846, gnl|rheMac2|chr4 (34810734-34810568) | |
676-846, gnl|rn3|chr10 (88198111-88198310) | |
676-846, gnl|tetNig1|chr18 (5127740-5127901) | |
676-846, gnl|xenTro1|scaffold_574 (403873-403681) | |
681-840, gnl|bosTau2|chr19 (33772631-33772790) | |
681-840, gnl|canFam2|chr9 (25154882-25154695) | |
681-840, gnl|danRer3|chr19 (1223193-1223358) | |
681-840, gnl|dasNov1|scaffold_21574 (58494-58681) | |
681-840, gnl|echTel1|scaffold_319256 (48719-48532) | |
681-840, gnl|fr1|chrUn (253379909-253379737) | |
681-840, gnl|galGal2|chr27_random (546571-546398) | |
681-840, gnl|hg17|chr17 (36274572-36274759) | |
681-840, gnl|Hg17|chr17 (36274739-36274580) | |
681-840, gnl|loxAfr1|scaffold_41873 (4981-4792) | |
681-840, gnl|mm7|chr11 (99528576-99528757) | |
681-840, gnl|Mm7|chr11 (99528738-99528579) | |
681-840, gnl|monDom2|scaffold_18 (50373605-50373787) | |
681-840, gnl|oryCun1|scaffold_206837 (4164-4346) | |
681-840, gnl|panTro1|chr19 (39524351-39524538) | |
681-840, gnl|rheMac2|chr16 (50980984-50981171) | |
681-840, gnl|rn3|chr10 (88339988-88340169) | |
681-840, gnl|tetNig1|chr18 (5133772-5133936) | |
681-840, gnl|xenTro1|scaffold_574 (164846-164672) | |
849-994, gnl|bosTau2|chr23 (584150-584295) | |
849-994, gnl|canFam2|chr9 (24699068-24698885) | |
849-994, gnl|danRer3|chr19 (1116778-1116935) | |
849-994, gnl|dasNov1|scaffold_5357 (1586-1769) | |
849-994, gnl|echTel1|scaffold_317854 (77375-77559) | |
849-994, gnl|fr1|chrUn (253387778-253387608) | |
849-994, gnl|galGal2|chr27_random (555146-554964) | |
849-994, gnl|hg17|chr17 (36789342-36789525) | |
849-994, gnl|Hg17|chr17 (36789497-36789352) | |
849-994, gnl|loxAfr1|scaffold_51018 (34800-34617) | |
849-994, gnl|mm7|chr11 (100147952-100148135) | |
849-994, gnl|Mm7|chr11 (100148107-100147962) | |
849-994, gnl|monDom2|scaffold_18 (51354509-51354692) | |
849-994, gnl|oryCun1|scaffold_210461 (35661-35489) | |
849-994, gnl|panTro1|chr19 (39988981-39989163) | |
849-994, gnl|rheMac2|chr16 (51479212-51479395) | |
849-994, gnl|rn3|chr10 (88988999-88989182) | |
849-994, gnl|tetNig1|chr18 (5133528-5133696) | |
849-994, gnl|xenTro1|scaffold_394 (449977-450157) | |
1117-1339, gnl|bosTau2|chr19 (33589462-33589683) | |
1117-1339, gnl|canFam2|chr9 (25043319-25043073) | |
1117-1339, gnl|danRer3|chr19 (1233618-1233851) | |
1117-1339, gnl|dasNov1|scaffold_4155 (3265-3513) | |
1117-1339, gnl|echTel1|scaffold_158520 (2184-2403) | |
1117-1339, gnl|fr1|chrUn (253380798-253380561) | |
1117-1339, gnl|galGal2|chr27_random (592256-592025) | |
1117-1339, gnl|hg17|chr17 (36388571-36388816) | |
1117-1339, gnl|Hg17|chr17 (36388809-36388588) | |
1117-1339, gnl|loxAfr1|scaffold_72845 (29391-29643) | |
1117-1339, gnl|mm7|chr11 (99647579-99647825) | |
1117-1339, gnl|Mm7|chr11 (99647817-99647596) | |
1117-1339, gnl|monDom2|scaffold_18 (50580761-50581002) | |
1117-1339, gnl|oryCun1|scaffold_206837 (110509-110755) | |
1117-1339, gnl|panTro1|chr19 (39638740-39638985) | |
1117-1339, gnl|rheMac2|chr16 (51095515-51095760) | |
1117-1339, gnl|rn3|chr10 (88498548-88498794) | |
1117-1339, gnl|tetNig1|chr18 (5132907-5133137) | |
1117-1339, gnl|xenTro1|scaffold_394 (449456-449703) | |
1131-1338, gnl|bosTau2|chr19 (33774139-33774346) | |
1131-1338, gnl|Hg17|chr17 (36273115-36272908) | |
1131-1338, gnl|Mm7|chr11 (99527168-99526961) | |
1396-1640, gnl|bosTau2|chr23 (374778-375037) | |
1396-1640, gnl|Hg17|chr17 (36992304-36992057) | |
1396-1640, gnl|Mm7|chr11 (100312442-100312201) |
Aligned organism(s): 104 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
5-596, gnl|bosTau2|chr23 (370782-371384) | |
5-596, gnl|Hg17|chr17 (36996668-36996088) | |
5-596, gnl|Mm7|chr11 (100316553-100315952) | |
396-528, gnl|bosTau2|chr19 (33898622-33898754) | |
396-528, gnl|canFam2|chr9 (25228468-25228268) | |
396-528, gnl|danRer3|chr19 (1206200-1206388) | |
396-528, gnl|dasNov1|scaffold_5382 (5847-5647) | |
396-528, gnl|echTel1|scaffold_312304 (42611-42412) | |
396-528, gnl|fr1|chrUn (253379363-253379175) | |
396-528, gnl|galGal2|chr27_random (623015-622827) | |
396-528, gnl|hg17|chr17 (36191826-36192026) | |
396-528, gnl|Hg17|chr17 (36192040-36191908) | |
396-528, gnl|loxAfr1|scaffold_3749 (80210-80010) | |
396-528, gnl|mm7|chr11 (99459697-99459897) | |
396-528, gnl|Mm7|chr11 (99459911-99459779) | |
396-528, gnl|monDom2|scaffold_18 (50213893-50214093) | |
396-528, gnl|oryCun1|scaffold_203191 (2977-2777) | |
396-528, gnl|panTro1|chr19 (39439038-39439238) | |
396-528, gnl|rheMac2|chr16 (50899430-50899630) | |
396-528, gnl|rn3|chr10 (88267799-88267999) | |
396-528, gnl|tetNig1|chr18 (5134305-5134493) | |
396-528, gnl|xenTro1|scaffold_574 (218489-218289) | |
676-846, gnl|bosTau2|chr19 (33975611-33975780) | |
676-846, gnl|canFam2|chr9 (25297895-25297695) | |
676-846, gnl|danRer3|chr19 (1139167-1139356) | |
676-846, gnl|dasNov1|scaffold_5382 (70287-70088) | |
676-846, gnl|echTel1|scaffold_319302 (81644-81447) | |
676-846, gnl|fr1|chrUn (253387528-253387366) | |
676-846, gnl|galGal2|chr27_random (597743-597568) | |
676-846, gnl|hg17|chr17 (36110899-36111102) | |
676-846, gnl|Hg17|chr17 (36111078-36110909) | |
676-846, gnl|loxAfr1|scaffold_16243 (16635-16436) | |
676-846, gnl|mm7|chr11 (99391662-99391862) | |
676-846, gnl|Mm7|chr11 (99391841-99391672) | |
676-846, gnl|monDom2|scaffold_18 (50091983-50092164) | |
676-846, gnl|oryCun1|scaffold_185714 (147-346) | |
676-846, gnl|panTro1|chr19 (39357971-39358174) | |
676-846, gnl|rheMac2|chr4 (34810734-34810568) | |
676-846, gnl|rn3|chr10 (88198111-88198310) | |
676-846, gnl|tetNig1|chr18 (5127740-5127901) | |
676-846, gnl|xenTro1|scaffold_574 (403873-403681) | |
681-840, gnl|bosTau2|chr19 (33772631-33772790) | |
681-840, gnl|canFam2|chr9 (25154882-25154695) | |
681-840, gnl|danRer3|chr19 (1223193-1223358) | |
681-840, gnl|dasNov1|scaffold_21574 (58494-58681) | |
681-840, gnl|echTel1|scaffold_319256 (48719-48532) | |
681-840, gnl|fr1|chrUn (253379909-253379737) | |
681-840, gnl|galGal2|chr27_random (546571-546398) | |
681-840, gnl|hg17|chr17 (36274572-36274759) | |
681-840, gnl|Hg17|chr17 (36274739-36274580) | |
681-840, gnl|loxAfr1|scaffold_41873 (4981-4792) | |
681-840, gnl|mm7|chr11 (99528576-99528757) | |
681-840, gnl|Mm7|chr11 (99528738-99528579) | |
681-840, gnl|monDom2|scaffold_18 (50373605-50373787) | |
681-840, gnl|oryCun1|scaffold_206837 (4164-4346) | |
681-840, gnl|panTro1|chr19 (39524351-39524538) | |
681-840, gnl|rheMac2|chr16 (50980984-50981171) | |
681-840, gnl|rn3|chr10 (88339988-88340169) | |
681-840, gnl|tetNig1|chr18 (5133772-5133936) | |
681-840, gnl|xenTro1|scaffold_574 (164846-164672) | |
849-994, gnl|bosTau2|chr23 (584150-584295) | |
849-994, gnl|canFam2|chr9 (24699068-24698885) | |
849-994, gnl|danRer3|chr19 (1116778-1116935) | |
849-994, gnl|dasNov1|scaffold_5357 (1586-1769) | |
849-994, gnl|echTel1|scaffold_317854 (77375-77559) | |
849-994, gnl|fr1|chrUn (253387778-253387608) | |
849-994, gnl|galGal2|chr27_random (555146-554964) | |
849-994, gnl|hg17|chr17 (36789342-36789525) | |
849-994, gnl|Hg17|chr17 (36789497-36789352) | |
849-994, gnl|loxAfr1|scaffold_51018 (34800-34617) | |
849-994, gnl|mm7|chr11 (100147952-100148135) | |
849-994, gnl|Mm7|chr11 (100148107-100147962) | |
849-994, gnl|monDom2|scaffold_18 (51354509-51354692) | |
849-994, gnl|oryCun1|scaffold_210461 (35661-35489) | |
849-994, gnl|panTro1|chr19 (39988981-39989163) | |
849-994, gnl|rheMac2|chr16 (51479212-51479395) | |
849-994, gnl|rn3|chr10 (88988999-88989182) | |
849-994, gnl|tetNig1|chr18 (5133528-5133696) | |
849-994, gnl|xenTro1|scaffold_394 (449977-450157) | |
1117-1339, gnl|bosTau2|chr19 (33589462-33589683) | |
1117-1339, gnl|canFam2|chr9 (25043319-25043073) | |
1117-1339, gnl|danRer3|chr19 (1233618-1233851) | |
1117-1339, gnl|dasNov1|scaffold_4155 (3265-3513) | |
1117-1339, gnl|echTel1|scaffold_158520 (2184-2403) | |
1117-1339, gnl|fr1|chrUn (253380798-253380561) | |
1117-1339, gnl|galGal2|chr27_random (592256-592025) | |
1117-1339, gnl|hg17|chr17 (36388571-36388816) | |
1117-1339, gnl|Hg17|chr17 (36388809-36388588) | |
1117-1339, gnl|loxAfr1|scaffold_72845 (29391-29643) | |
1117-1339, gnl|mm7|chr11 (99647579-99647825) | |
1117-1339, gnl|Mm7|chr11 (99647817-99647596) | |
1117-1339, gnl|monDom2|scaffold_18 (50580761-50581002) | |
1117-1339, gnl|oryCun1|scaffold_206837 (110509-110755) | |
1117-1339, gnl|panTro1|chr19 (39638740-39638985) | |
1117-1339, gnl|rheMac2|chr16 (51095515-51095760) | |
1117-1339, gnl|rn3|chr10 (88498548-88498794) | |
1117-1339, gnl|tetNig1|chr18 (5132907-5133137) | |
1117-1339, gnl|xenTro1|scaffold_394 (449456-449703) | |
1131-1338, gnl|bosTau2|chr19 (33774139-33774346) | |
1131-1338, gnl|Hg17|chr17 (36273115-36272908) | |
1131-1338, gnl|Mm7|chr11 (99527168-99526961) | |
1396-1640, gnl|bosTau2|chr23 (374778-375037) | |
1396-1640, gnl|Hg17|chr17 (36992304-36992057) | |
1396-1640, gnl|Mm7|chr11 (100312442-100312201) |
Expressed library(ies): 7 entry(ies) | More info |
Expressed library(ies): 7 entry(ies) | Help | Less info |
ton (4.914) | |
nep (2.39102) | |
pla (0.267344) | |
eep (0.245128) | |
eru (0.240096) | |
mcp (0.170648) | |
eye (0.170503) |
Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
ton (4.914) | |
nep (2.39102) | |
pla (0.267344) | |
eep (0.245128) | |
eru (0.240096) | |
mcp (0.170648) | |
eye (0.170503) |