Non-Coding RNA Search

Ss1.1-Thy1-THY010013B03.5

Sequence:


               
               ATGGAGCCTGGAACAAACTCTTTTCGAGTAGAATTTCCTGATTTTTCCAGCACCATTCTG
CAGAAACTAAACCAGCAGCGCCAGCAGGGACAATTATGTGATGTCTCCATTGTTGTCCAA
GGCCACATTTTCCGGGCACACAAAGCTGTTCTTGCTGCCAGTTCACCCTACTTCTGTGAC
CAGGTACTCCTGAAAAACAGCAGGAGGATTGTTTTGCCTGATGTGATGAACCCCAGAGTG
TTTGAGAACATTCTCCTATCAAGTTACACGGGACGTCTAGTAATGCCTGCTCCAGAAATT
GTCAGTTACTTAACAGCAGCAAGCTTCCTCCAGATGTGGCATGTGGTAGACAAATGCACT
GAGGTTTTAGAGGGAAACCCCACAGTCCTTTGTCAGAAGCTAAATCATGGCAGTGACCAC
CAGTCTCCAAGCAGCAGTAGTTATAATGGCCTGGTAGAGAGCTTTGAGCTGGGCTCTGGG
GGCCACACCGATTTCCCCAAAGCCCAGGAACTGAGGGATGGAGAGAATGAAGAGGAGAGC
ACCAAAGACGAGCTGTCATCTCAGCTCACCGAGCATGAATACCTTCCTAGCAACTCGTCC
ACAGAGCACGACCGGCTGAGCACTGAAATGGCGAGCCAGGATGGGGAGGAGGGGGCCAGC
GACAGCGCCGAGTTCCACTACACCCGGCCCATGTACAGCAAGCCCAGCATCATGGCTCAC
AAACGCTGGATCCATGTGAAGCCCGAGCGCTTCGAACAAGCGTGCGAGGGCATGGATGTG
CACGCGCCCTACGACGAGCACCAGGTCACAGAGTCCATCAACACCATGCAGACAGAGCAC
TCCGTCCAGCCCTCGGGAGTAGAGGAGGACTTCCACATCGGGGAGAAAAAGGTGGAAGCG
GAGTTTGATGAACAGGCTGATGAAAGCAATTATGACGAGCAGGTGGACTTCTATGGCTCT
TCCATGGAAGAGTTCTCCGGAGAGAGGTCAGATGGGAATCTGATTGGGCACAGACAGGAG
GCTGCCCTGGCATCGGGTTACACTGAGAATATTGAAATGGTCACAGGAATTAAAGAAGAA
GCTTCCCACCTGGGATTCTCAGCCAGCGACAAGCTGTATCCATGTCAGTGTGGGAAAAGT
TTCACGCACAAGAGTCAGAGAGATCGACACATGAGCATGCACCTTGGCCTTCGGCCTTAT
GGCTGTGGTGTCTGTGGTAAGAAATTCAAAATGAAGCATCATCTCGTGGGCCACATGAAA
ATTCACACAGGCATCAAGCCATATGAGTGTAATATCTGTGCAAAGAGATTTATGTGGAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGGAGCCTGGAACAAACTCTTTTCGAGTAGAATTTCCTGATTTTTCCAGCACCATTCTG
CAGAAACTAAACCAGCAGCGCCAGCAGGGACAATTATGTGATGTCTCCATTGTTGTCCAA
GGCCACATTTTCCGGGCACACAAAGCTGTTCTTGCTGCCAGTTCACCCTACTTCTGTGAC
CAGGTACTCCTGAAAAACAGCAGGAGGATTGTTTTGCCTGATGTGATGAACCCCAGAGTG
TTTGAGAACATTCTCCTATCAAGTTACACGGGACGTCTAGTAATGCCTGCTCCAGAAATT
GTCAGTTACTTAACAGCAGCAAGCTTCCTCCAGATGTGGCATGTGGTAGACAAATGCACT
GAGGTTTTAGAGGGAAACCCCACAGTCCTTTGTCAGAAGCTAAATCATGGCAGTGACCAC
CAGTCTCCAAGCAGCAGTAGTTATAATGGCCTGGTAGAGAGCTTTGAGCTGGGCTCTGGG
GGCCACACCGATTTCCCCAAAGCCCAGGAACTGAGGGATGGAGAGAATGAAGAGGAGAGC
ACCAAAGACGAGCTGTCATCTCAGCTCACCGAGCATGAATACCTTCCTAGCAACTCGTCC
ACAGAGCACGACCGGCTGAGCACTGAAATGGCGAGCCAGGATGGGGAGGAGGGGGCCAGC
GACAGCGCCGAGTTCCACTACACCCGGCCCATGTACAGCAAGCCCAGCATCATGGCTCAC
AAACGCTGGATCCATGTGAAGCCCGAGCGCTTCGAACAAGCGTGCGAGGGCATGGATGTG
CACGCGCCCTACGACGAGCACCAGGTCACAGAGTCCATCAACACCATGCAGACAGAGCAC
TCCGTCCAGCCCTCGGGAGTAGAGGAGGACTTCCACATCGGGGAGAAAAAGGTGGAAGCG
GAGTTTGATGAACAGGCTGATGAAAGCAATTATGACGAGCAGGTGGACTTCTATGGCTCT
TCCATGGAAGAGTTCTCCGGAGAGAGGTCAGATGGGAATCTGATTGGGCACAGACAGGAG
GCTGCCCTGGCATCGGGTTACACTGAGAATATTGAAATGGTCACAGGAATTAAAGAAGAA
GCTTCCCACCTGGGATTCTCAGCCAGCGACAAGCTGTATCCATGTCAGTGTGGGAAAAGT
TTCACGCACAAGAGTCAGAGAGATCGACACATGAGCATGCACCTTGGCCTTCGGCCTTAT
GGCTGTGGTGTCTGTGGTAAGAAATTCAAAATGAAGCATCATCTCGTGGGCCACATGAAA
ATTCACACAGGCATCAAGCCATATGAGTGTAATATCTGTGCAAAGAGATTTATGTGGAGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5JU97_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5JU97_HUMAN

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               80-199, - strand, RNAz p=0.59475
               

               
               400-519, - strand, RNAz p=0.764596
               

               
               1203-1320, + strand, RNAz p=0.572322

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-199, - strand, RNAz p=0.59475
               

               
               400-519, - strand, RNAz p=0.764596
               

               
               1203-1320, + strand, RNAz p=0.572322

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1320, gnl|bosTau2|chr11 (75123657-75122338)
               

               
               1-1320, gnl|Hg17|chr9 (126674343-126675662)
               

               
               1-1320, gnl|Mm7|chr2 (33462411-33461092)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1320, gnl|bosTau2|chr11 (75123657-75122338)
               

               
               1-1320, gnl|Hg17|chr9 (126674343-126675662)
               

               
               1-1320, gnl|Mm7|chr2 (33462411-33461092)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               hea (0.204499)
               

               
               sug (0.127291)
               

               
               ebs (0.118301)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.204499)
               

               
               sug (0.127291)
               

               
               ebs (0.118301)

	80-199, - strand, RNAz p=0.59475
	400-519, - strand, RNAz p=0.764596
	1203-1320, + strand, RNAz p=0.572322

	1-1320, gnl\|bosTau2\|chr11 (75123657-75122338)
	1-1320, gnl\|Hg17\|chr9 (126674343-126675662)
	1-1320, gnl\|Mm7\|chr2 (33462411-33461092)