Ss1.1-Thy1-THY010015E10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATGAGCGGGGGCGCAGCTGCGGCGGAGCGGCTGACGCCGGGTCCGCGCCCACTGTATCCC CCTCCCTGTTTTCTCCCTCCGCTTCCCACTCCTTCCCCCGCCCGCCCAGAGCTGCCCGCC CGGGAGAGCTGCTCAGAGCTACCGGGGAGATTCAGGTGGTGAAGACTTAATCTGCTGGGA AGTAGAAGAGTACTTCTTCACTTGAAAAATGCCTCCCAAGTTCAAGCGCCACCTAAATGA TGATGATGTCACTGGTTCTGTGAAAAGTGAAAGGAGAAATCTTTTAGAAGATGATTCAGA TGAAGAAGAGGACTTTTTTCTAAGGGGACCATCTGGACCAAGATTTGGACCTAGAAATGA TAAAATTAAGCATGTTCAGAATCAGGTGGATGAAGTCATTGATGTCATGCAAGAAAATAT TACAAAGGTAATTGAAAGAGGGGAGAGACTAGATGAACTACAGGACAAATCAGAAAGCTT ATCGGATAATGCAACAGCTTTTAGCAACAGATCCAAACAACTTCGAAGGCAAATGTGGTG GCGCGGATGCAAAATAAAAGCCATCATGGCTTTGGTTGCTGCTATCCTTTTGTTAGTGAT TATCATTCTTGTAGTTGTGAAATACCATACTTGATTTGATGACAGATCTTCATTAAACAA AATCTGGGACAGTAATAAAAGATTGCTGCATAATTTAAATGAAACCCATGTATATAACTT TCAAAGCTTCTTTTTCAAGAAATTAAGAGGCAAGTGTCACTTCAAATTGGAGCACTGAGA ATATCCAGTTATCTTCTCCCCTTCCAACAAAATGTGTTTTTAATAATTATGTTTAAGGCA AAGATAATAGCAACCTCGATTTTACCATATTCCAAGGGTCTGATTTGAAACTAGATACTT GCCAGTTCACTATCTGTGTATATAATTTAACACTGATAACAATATTTCATACTGTTATTT TAATGGCATAAAGACTTGGATTCATTGCATCAAGTTGGGAGTCAGACTGGTGGTCAGGGA GCCTCTGTAGAGTACCAAATCATTATGCTGAAAGACATGTATAACCATTCGACCAATCTT TGCAAGATTTTTCTCATGTTACAATTGCTTTGCAAGCAATTTTCACAGGTTTATGGGTAT AGCAAAAGCTAAATGTTATAAACGTTGCTGCCTTTCAGCTATAACTAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATGAGCGGGGGCGCAGCTGCGGCGGAGCGGCTGACGCCGGGTCCGCGCCCACTGTATCCC CCTCCCTGTTTTCTCCCTCCGCTTCCCACTCCTTCCCCCGCCCGCCCAGAGCTGCCCGCC CGGGAGAGCTGCTCAGAGCTACCGGGGAGATTCAGGTGGTGAAGACTTAATCTGCTGGGA AGTAGAAGAGTACTTCTTCACTTGAAAAATGCCTCCCAAGTTCAAGCGCCACCTAAATGA TGATGATGTCACTGGTTCTGTGAAAAGTGAAAGGAGAAATCTTTTAGAAGATGATTCAGA TGAAGAAGAGGACTTTTTTCTAAGGGGACCATCTGGACCAAGATTTGGACCTAGAAATGA TAAAATTAAGCATGTTCAGAATCAGGTGGATGAAGTCATTGATGTCATGCAAGAAAATAT TACAAAGGTAATTGAAAGAGGGGAGAGACTAGATGAACTACAGGACAAATCAGAAAGCTT ATCGGATAATGCAACAGCTTTTAGCAACAGATCCAAACAACTTCGAAGGCAAATGTGGTG GCGCGGATGCAAAATAAAAGCCATCATGGCTTTGGTTGCTGCTATCCTTTTGTTAGTGAT TATCATTCTTGTAGTTGTGAAATACCATACTTGATTTGATGACAGATCTTCATTAAACAA AATCTGGGACAGTAATAAAAGATTGCTGCATAATTTAAATGAAACCCATGTATATAACTT TCAAAGCTTCTTTTTCAAGAAATTAAGAGGCAAGTGTCACTTCAAATTGGAGCACTGAGA ATATCCAGTTATCTTCTCCCCTTCCAACAAAATGTGTTTTTAATAATTATGTTTAAGGCA AAGATAATAGCAACCTCGATTTTACCATATTCCAAGGGTCTGATTTGAAACTAGATACTT GCCAGTTCACTATCTGTGTATATAATTTAACACTGATAACAATATTTCATACTGTTATTT TAATGGCATAAAGACTTGGATTCATTGCATCAAGTTGGGAGTCAGACTGGTGGTCAGGGA GCCTCTGTAGAGTACCAAATCATTATGCTGAAAGACATGTATAACCATTCGACCAATCTT TGCAAGATTTTTCTCATGTTACAATTGCTTTGCAAGCAATTTTCACAGGTTTATGGGTAT AGCAAAAGCTAAATGTTATAAACGTTGCTGCCTTTCAGCTATAACTAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 373-473, gnl|bosTau2|chr16 (27728710-27728610) | |
| 373-473, gnl|canFam2|chr7 (30262614-30262508) | |
| 373-473, gnl|danRer3|chr20 (15190264-15190368) | |
| 373-473, gnl|dasNov1|scaffold_115434 (4786-4892) | |
| 373-473, gnl|echTel1|scaffold_310645 (117258-117152) | |
| 373-473, gnl|galGal2|chr8 (4655613-4655718) | |
| 373-473, gnl|hg17|chr1 (168411510-168411616) | |
| 373-473, gnl|Hg17|chr1 (168411611-168411511) | |
| 373-473, gnl|loxAfr1|scaffold_27419 (7731-7625) | |
| 373-473, gnl|mm7|chr1 (162549526-162549420) | |
| 373-473, gnl|Mm7|chr1 (162549423-162549523) | |
| 373-473, gnl|monDom2|scaffold_16 (22796834-22796940) | |
| 373-473, gnl|oryCun1|scaffold_194343 (128180-128286) | |
| 373-473, gnl|panTro1|chr1 (150709902-150710008) | |
| 373-473, gnl|rheMac2|chr1 (201404505-201404611) | |
| 373-473, gnl|rn3|chr13 (78273542-78273436) | |
| 373-473, gnl|tetNig1|chrUn_random (83577006-83577112) | |
| 373-473, gnl|xenTro1|scaffold_74 (923380-923275) | |
| 606-1188, gnl|bosTau2|chr16 (27721834-27721251) | |
| 606-1188, gnl|Hg17|chr1 (168405331-168404750) | |
| 606-1188, gnl|Mm7|chr1 (162555773-162556349) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 373-473, gnl|bosTau2|chr16 (27728710-27728610) | |
| 373-473, gnl|canFam2|chr7 (30262614-30262508) | |
| 373-473, gnl|danRer3|chr20 (15190264-15190368) | |
| 373-473, gnl|dasNov1|scaffold_115434 (4786-4892) | |
| 373-473, gnl|echTel1|scaffold_310645 (117258-117152) | |
| 373-473, gnl|galGal2|chr8 (4655613-4655718) | |
| 373-473, gnl|hg17|chr1 (168411510-168411616) | |
| 373-473, gnl|Hg17|chr1 (168411611-168411511) | |
| 373-473, gnl|loxAfr1|scaffold_27419 (7731-7625) | |
| 373-473, gnl|mm7|chr1 (162549526-162549420) | |
| 373-473, gnl|Mm7|chr1 (162549423-162549523) | |
| 373-473, gnl|monDom2|scaffold_16 (22796834-22796940) | |
| 373-473, gnl|oryCun1|scaffold_194343 (128180-128286) | |
| 373-473, gnl|panTro1|chr1 (150709902-150710008) | |
| 373-473, gnl|rheMac2|chr1 (201404505-201404611) | |
| 373-473, gnl|rn3|chr13 (78273542-78273436) | |
| 373-473, gnl|tetNig1|chrUn_random (83577006-83577112) | |
| 373-473, gnl|xenTro1|scaffold_74 (923380-923275) | |
| 606-1188, gnl|bosTau2|chr16 (27721834-27721251) | |
| 606-1188, gnl|Hg17|chr1 (168405331-168404750) | |
| 606-1188, gnl|Mm7|chr1 (162555773-162556349) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| cbr (0.767853) | |
| liv (0.292569) | |
| tra (0.246184) | |
| fcc (0.197785) | |
| sag (0.182715) | |
| fco (0.157208) | |
| bfe (0.149858) | |
| spl (0.143184) | |
| lyg (0.133103) | |
| sug (0.127291) | |
| bla (0.124347) | |
| pgl (0.118483) | |
| spc (0.113366) | |
| jej (0.0989218) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbr (0.767853) | |
| liv (0.292569) | |
| tra (0.246184) | |
| fcc (0.197785) | |
| sag (0.182715) | |
| fco (0.157208) | |
| bfe (0.149858) | |
| spl (0.143184) | |
| lyg (0.133103) | |
| sug (0.127291) | |
| bla (0.124347) | |
| pgl (0.118483) | |
| spc (0.113366) | |
| jej (0.0989218) |