Non-Coding RNA Search

Ss1.1-Thy1-THY010018D03.5

Sequence:


               
               AATGCGTTGGGTGGGCACCTGTGCAACCAGTAGTTATGCGCGGCTTGGAGGACCCTGGGC
CTCGCCCTAAAGCTACCCCGTGCGGGTGCGTGAAGCCAACTCTGGAGACAGGGAATCTTT
TAACAGAGCCAATTGGATACTTGGAATCCTGTTTCTTAGCCAAGAATGGTACTCCAAGGC
AGCCAACCATTTGTAGCCACTCACGGGCCTGTTTGAGGATTAGAAAAAGTATCTTTAATA
ATCCTGAACATTCCTTGATGGGCTTAGAACAGTTTTCTCACGTTTGGATTTTGTTTGTTT
TTCACAAAAACGGTCATTTGAGCTGTAAGGCCAAAGTGCAGCCTCCTAGGCTGAATGGTG
CAAAGACTGGTGTTTTCTCCACAAGGAGTCCCCATCGTCCCAATGCAATAGGACTGACTC
TGGCCAAACTGGAAAAGGTGGAAGTAATGCCACCAGAGAGAAGCATCCGGTGCTGTAGGA
AATAGTTTTAAGCTGAACCTGGAAAGATGGTCATGGGCTTGTTTCTCTGTATTTTCACTC
TTATGCAGGAGACTGTCTTAACTTTGGAAATTAGAGGAAGCAAATGGAAAAAAGGTTAAA
GTAGTTGGCCATCAAGCAGAGAAAACCTCTGTTAATATCTTGGTTTATACCTTCCATAAT
TTTTTCAGTGCATATATACTAGAAATGTGTGTTGATATGTAATCCCACTGTTTTATAACC
TCAAAACCTTAAGGTTTGTAAAAACTTTCCATGGCAATTAATGTTAATTTTAAGAGGTCG
CACACTGTTTTTGTTTTATAGGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATGCGTTGGGTGGGCACCTGTGCAACCAGTAGTTATGCGCGGCTTGGAGGACCCTGGGC
CTCGCCCTAAAGCTACCCCGTGCGGGTGCGTGAAGCCAACTCTGGAGACAGGGAATCTTT
TAACAGAGCCAATTGGATACTTGGAATCCTGTTTCTTAGCCAAGAATGGTACTCCAAGGC
AGCCAACCATTTGTAGCCACTCACGGGCCTGTTTGAGGATTAGAAAAAGTATCTTTAATA
ATCCTGAACATTCCTTGATGGGCTTAGAACAGTTTTCTCACGTTTGGATTTTGTTTGTTT
TTCACAAAAACGGTCATTTGAGCTGTAAGGCCAAAGTGCAGCCTCCTAGGCTGAATGGTG
CAAAGACTGGTGTTTTCTCCACAAGGAGTCCCCATCGTCCCAATGCAATAGGACTGACTC
TGGCCAAACTGGAAAAGGTGGAAGTAATGCCACCAGAGAGAAGCATCCGGTGCTGTAGGA
AATAGTTTTAAGCTGAACCTGGAAAGATGGTCATGGGCTTGTTTCTCTGTATTTTCACTC
TTATGCAGGAGACTGTCTTAACTTTGGAAATTAGAGGAAGCAAATGGAAAAAAGGTTAAA
GTAGTTGGCCATCAAGCAGAGAAAACCTCTGTTAATATCTTGGTTTATACCTTCCATAAT
TTTTTCAGTGCATATATACTAGAAATGTGTGTTGATATGTAATCCCACTGTTTTATAACC
TCAAAACCTTAAGGTTTGTAAAAACTTTCCATGGCAATTAATGTTAATTTTAAGAGGTCG
CACACTGTTTTTGTTTTATAGGTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55959836|emb|CAI12806.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55959836|emb|CAI12806.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               150-269, - strand, RNAz p=0.869497
               

               
               175-280, + strand, RNAz p=0.534968

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               150-269, - strand, RNAz p=0.869497
               

               
               175-280, + strand, RNAz p=0.534968

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               110-296, gnl|bosTau2|chr8 (33124881-33124694)
               

               
               110-296, gnl|canFam2|chr11 (58228369-58228596)
               

               
               110-296, gnl|danRer3|chr1 (27958241-27958038)
               

               
               110-296, gnl|dasNov1|scaffold_76800 (7857-7629)
               

               
               110-296, gnl|echTel1|scaffold_322530 (12050-12271)
               

               
               110-296, gnl|fr1|chrUn (118602611-118602369)
               

               
               110-296, gnl|hg17|chr9 (97757982-97758210)
               

               
               110-296, gnl|Hg17|chr9 (97758177-97757990)
               

               
               110-296, gnl|loxAfr1|scaffold_5788 (52468-52240)
               

               
               110-296, gnl|mm7|chr4 (46401363-46401590)
               

               
               110-296, gnl|Mm7|chr4 (46401558-46401371)
               

               
               110-296, gnl|monDom2|scaffold_19 (13348829-13349051)
               

               
               110-296, gnl|oryCun1|scaffold_184474 (10636-10863)
               

               
               110-296, gnl|panTro1|chr11 (81972680-81972908)
               

               
               110-296, gnl|rheMac2|chr15 (38312724-38312496)
               

               
               110-296, gnl|rn3|chr5 (62950388-62950616)
               

               
               110-296, gnl|tetNig1|chr18 (6471753-6471935)
               

               
               110-296, gnl|xenTro1|scaffold_196 (440871-441107)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               110-296, gnl|bosTau2|chr8 (33124881-33124694)
               

               
               110-296, gnl|canFam2|chr11 (58228369-58228596)
               

               
               110-296, gnl|danRer3|chr1 (27958241-27958038)
               

               
               110-296, gnl|dasNov1|scaffold_76800 (7857-7629)
               

               
               110-296, gnl|echTel1|scaffold_322530 (12050-12271)
               

               
               110-296, gnl|fr1|chrUn (118602611-118602369)
               

               
               110-296, gnl|hg17|chr9 (97757982-97758210)
               

               
               110-296, gnl|Hg17|chr9 (97758177-97757990)
               

               
               110-296, gnl|loxAfr1|scaffold_5788 (52468-52240)
               

               
               110-296, gnl|mm7|chr4 (46401363-46401590)
               

               
               110-296, gnl|Mm7|chr4 (46401558-46401371)
               

               
               110-296, gnl|monDom2|scaffold_19 (13348829-13349051)
               

               
               110-296, gnl|oryCun1|scaffold_184474 (10636-10863)
               

               
               110-296, gnl|panTro1|chr11 (81972680-81972908)
               

               
               110-296, gnl|rheMac2|chr15 (38312724-38312496)
               

               
               110-296, gnl|rn3|chr5 (62950388-62950616)
               

               
               110-296, gnl|tetNig1|chr18 (6471753-6471935)
               

               
               110-296, gnl|xenTro1|scaffold_196 (440871-441107)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               cov (0.132153)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.132153)

	150-269, - strand, RNAz p=0.869497
	175-280, + strand, RNAz p=0.534968

	110-296, gnl\|bosTau2\|chr8 (33124881-33124694)
	110-296, gnl\|canFam2\|chr11 (58228369-58228596)
	110-296, gnl\|danRer3\|chr1 (27958241-27958038)
	110-296, gnl\|dasNov1\|scaffold_76800 (7857-7629)
	110-296, gnl\|echTel1\|scaffold_322530 (12050-12271)
	110-296, gnl\|fr1\|chrUn (118602611-118602369)
	110-296, gnl\|hg17\|chr9 (97757982-97758210)
	110-296, gnl\|Hg17\|chr9 (97758177-97757990)
	110-296, gnl\|loxAfr1\|scaffold_5788 (52468-52240)
	110-296, gnl\|mm7\|chr4 (46401363-46401590)
	110-296, gnl\|Mm7\|chr4 (46401558-46401371)
	110-296, gnl\|monDom2\|scaffold_19 (13348829-13349051)
	110-296, gnl\|oryCun1\|scaffold_184474 (10636-10863)
	110-296, gnl\|panTro1\|chr11 (81972680-81972908)
	110-296, gnl\|rheMac2\|chr15 (38312724-38312496)
	110-296, gnl\|rn3\|chr5 (62950388-62950616)
	110-296, gnl\|tetNig1\|chr18 (6471753-6471935)
	110-296, gnl\|xenTro1\|scaffold_196 (440871-441107)