Non-Coding RNA Search

Ss1.1-Thy1-THY010018E02.5

Sequence:


               
               GAAGAACCTTGTAGAGGATTTGTCTGAAAATGGGTTTCAAGGATGAACTTTTCTACACAG
CTCAGTGATTTGCTTAAGTCCTACCAACTATTATTAAAATTGACACTGTTAAATATTAAG
ATATTTTTTGATTTCTAGGAACTAGCTATTAGCAGGTGTCCTAAAAATATTTTTGAGCTG
ATTCCCTCAATAAGTAACCCTACTGTCTTGAAAATTCTTAGCCTTTTTCTAGTGATAGAA
AGTGAGGAGTAGGTAGTGTTCTTAGGGTGCCCAGCTGCTCTTGTGTGCCTGGGGCCACAC
TATCACCTGGGTGCAGGGCTTTTCCCAGAAAAACCCCAGGTGCACCAGGAGGAGCTGACA
GCCCTAGGTGTTCCTGTGATTTACCTTAAATGTCGTAGTACTTGCAGCTAAATTCAGCTG
CCCTCTGACCATCATCATTTCTGATACTTGTCTTCCAATTACTTATTACCATGGATGGAA
TGTGAGATTTTTAACAAACAGTAGCGAATGGCATCAAGGTTGTAGTGAAACCAACACTTA
GTAACCAGGAAAGATAACTGGTGGTTTACTGAAACAGAAAAGGCAACTAGGTAGCAAAGT
TCTTCTGAACCTGTGTGCGTAAGTACAAATCATGTCTTTATGGGGTTGGATTTAATCAGA
AATGTCAGTGTTCACAGTGAAAGAAAACTGAGTAGCGTTGTGGATTCCTTCTCTCTTGAG
GGAGAATATGGCCTTTGATGCTCTCTTCTCTGCTACATTCCCTAGACTATCCTGCTCAAG
AAGCCAGAATGTGGTACTAGTGTGTTCTCAGTGAGTGTCATGTTAAGATTACTAAATGCA
TCAGCCAGTGGCAGGAATTGGGTGTCGGGATCCAGACTGAGCAGTGCCCTCAGCTGATAG
CCTCTTGCCGCTCAGGTGCTTACCAGCTCTGACACCGACCACGGGAGGTGAGATTTTTCT
AAGACAGCATTAATTTTGTAATGCAATATGATGGATGCAGAGTCTGATACTGTTTCCCTG
TGGTGGTCCTCAGAGACTGCATCCTCTGTGCACTGTGATGTAGATGGTAGCTGTGTTCTT
TGTAAGCTTTAATCTTATGATTGTCAAAATATGATGTGGTTCCAATTTTTTAAAATTAAA
CGATGAGCTGAGGCTTTATTTCAGCTGGTTTTCAAGTTAAAATTGTGAAATACTGATTTC
CTTCTCTCCACCCACACCAAATATTTTAGTCTATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGAACCTTGTAGAGGATTTGTCTGAAAATGGGTTTCAAGGATGAACTTTTCTACACAG
CTCAGTGATTTGCTTAAGTCCTACCAACTATTATTAAAATTGACACTGTTAAATATTAAG
ATATTTTTTGATTTCTAGGAACTAGCTATTAGCAGGTGTCCTAAAAATATTTTTGAGCTG
ATTCCCTCAATAAGTAACCCTACTGTCTTGAAAATTCTTAGCCTTTTTCTAGTGATAGAA
AGTGAGGAGTAGGTAGTGTTCTTAGGGTGCCCAGCTGCTCTTGTGTGCCTGGGGCCACAC
TATCACCTGGGTGCAGGGCTTTTCCCAGAAAAACCCCAGGTGCACCAGGAGGAGCTGACA
GCCCTAGGTGTTCCTGTGATTTACCTTAAATGTCGTAGTACTTGCAGCTAAATTCAGCTG
CCCTCTGACCATCATCATTTCTGATACTTGTCTTCCAATTACTTATTACCATGGATGGAA
TGTGAGATTTTTAACAAACAGTAGCGAATGGCATCAAGGTTGTAGTGAAACCAACACTTA
GTAACCAGGAAAGATAACTGGTGGTTTACTGAAACAGAAAAGGCAACTAGGTAGCAAAGT
TCTTCTGAACCTGTGTGCGTAAGTACAAATCATGTCTTTATGGGGTTGGATTTAATCAGA
AATGTCAGTGTTCACAGTGAAAGAAAACTGAGTAGCGTTGTGGATTCCTTCTCTCTTGAG
GGAGAATATGGCCTTTGATGCTCTCTTCTCTGCTACATTCCCTAGACTATCCTGCTCAAG
AAGCCAGAATGTGGTACTAGTGTGTTCTCAGTGAGTGTCATGTTAAGATTACTAAATGCA
TCAGCCAGTGGCAGGAATTGGGTGTCGGGATCCAGACTGAGCAGTGCCCTCAGCTGATAG
CCTCTTGCCGCTCAGGTGCTTACCAGCTCTGACACCGACCACGGGAGGTGAGATTTTTCT
AAGACAGCATTAATTTTGTAATGCAATATGATGGATGCAGAGTCTGATACTGTTTCCCTG
TGGTGGTCCTCAGAGACTGCATCCTCTGTGCACTGTGATGTAGATGGTAGCTGTGTTCTT
TGTAAGCTTTAATCTTATGATTGTCAAAATATGATGTGGTTCCAATTTTTTAAAATTAAA
CGATGAGCTGAGGCTTTATTTCAGCTGGTTTTCAAGTTAAAATTGTGAAATACTGATTTC
CTTCTCTCCACCCACACCAAATATTTTAGTCTATTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               955-1071, - strand, RNAz p=0.865872

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               955-1071, - strand, RNAz p=0.865872

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-1236, gnl|bosTau2|chr24 (37811840-37813077)
               

               
               1-1236, gnl|Hg17|chr18 (43615125-43613674)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1236, gnl|bosTau2|chr24 (37811840-37813077)
               

               
               1-1236, gnl|Hg17|chr18 (43615125-43613674)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               cmu (0.186393)
               

               
               ton (0.1755)
               

               
               liv (0.146284)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               eje (0.0988338)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.186393)
               

               
               ton (0.1755)
               

               
               liv (0.146284)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               eje (0.0988338)

	1-1236, gnl\|bosTau2\|chr24 (37811840-37813077)
	1-1236, gnl\|Hg17\|chr18 (43615125-43613674)

	cmu (0.186393)
	ton (0.1755)
	liv (0.146284)
	ova (0.129132)
	thg (0.126791)
	eje (0.0988338)