Ss1.1-Thy1-THY010022B01.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCCCGGCTCCCGCGCCCTATTTGGTCTCTGCGGGTTAGGCAGCAGGAGGGGAGGCGTGC GCGGCGGAAGGGGACGCGGAGCGGACTCGGGTGCGCGAAGGCTCCTCTCTCACTCGCGCA GCCGCTACCTCGGTTGCGAGCCCACGAGGCCTCCGCGTCTTGCCCTCGGAACAATGGGAC TCGGCTCGCGAGGTTTCTTGGCGGTGCTGGCTCTAGGGGCCGTGCTGGCGATAGCGCTGC TGAAGATTGTCGCCGACAGCACAGACTTGGAGGAATCTGCAGACAAGAAGAATTCTATGT CTCTAAAAGGCAACGGTGCTGACCCAACAGCCCTGCAGGTGCCTTTAGGCCGTACAAATG AATCTTCTAACTTCACTGTGAAACTATCAGCAACTCAAGTTTCCCCAGTCTCAAAGGTGA CAACTACCACCTCGAAACCCATAGCAAAATCGTCAACAACTCCAGTTTCTTCAAAGAATT CAACAACCCCCACTTTGAAAACCACAGCAAAACCATCAACAACTCCTGTTTCCTCAGTCT CCAAGAATGCAACAGCCGCCACCTTGAAACCCATAGCAACAACTAAAATGACACCACAGG TCTCAACAAATACGACTTCCACCACCATAAGGTCTACACCCAAAATAACAAGTGTTTCAC AGAATATATCCCAGATGTCAACATCCACAATGAACACAACCCACAATAGTTCGGTGACAT CTGTTTCTCCATCAGTAACAATCACAGCAACTATTAATTCTAAGGAAAATAAAGGATCAA AATTTGATACCGGCAGCTTTGTTGGTGGTATTGTATTAACACTGGGAGTTTTATCTTTTC TTTACATTGGCTGCAAAATGTATTATTCAAGAAGAGGCATTCGGTATAGAACCATTGACG AACATGATGCCATCATTTAAGGGACTCTAAGGACCAAAAGAAAGAAGAAAGATTGATGCA GCCCTATCATTCTCTTCTTGAAAATAGCTAAACAGGCCATGCATATAATGTACAATGTAT TATATAAGTATGTAAAGATTCCTTGTGATTACTAAAGGTAAAAAGGGTTTGGTTTGGGTT TTTTAATGAACATATAGAGCATACCAGTTAATTCAATAGCTATAATATTCATTTTTGGAA AACATAATAAGACAAGTCCTGTCCATTTTCTGTGGCATTGGTTGCCTAGGGCCGGTAATT GGAAGACATTATCACTGAAGGGCATGATGCCATCTGGTCACACAAATAAGGAGCTTGTCC AAACGCTTTTGATGTCCTTTCTGCTCACACAAAGAACCTCAGTGCGATTAAGAGCTGAAT GTATCCTAATTACCAATGTCACGTAGCAGAAATTATATGAACAAACCAATATGAATAAAC CAAGCCGTAAGTATAATTTTAGTTTAAGTGTCTCTACAGAGGCATCGATAATACATATGT TTAAAGCTTAGTTATTTGGTTTAGAAATAAAATTCATACCCTCTCCCACCAAAGTATAGA ACTAGAAACAATACCTGGGTTTATCCTTGTTAGCCATTGGTGAGCATGTACTTTCAATAA CTTCTTTTGAGCTTTCAATGGCTATTGATGTAATTACCTTTTTTTCCCTCTATAATTTCA GTAAAATGCGATGTTTAACATGAGAATATTTTAAAGACTTAGTTGTTTTAAAAAGATTAT TTGCTACTGTGAGAATATTGTCAGCACTGGAAGTTGCTTTATTTCATATTCAGCTATTGA TTTTATATTTAGTGAATATTTTAACAGACGTAGGACTGCTCTCAATATTTAGAAATTAAA TAATGTAAACAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCCCGGCTCCCGCGCCCTATTTGGTCTCTGCGGGTTAGGCAGCAGGAGGGGAGGCGTGC GCGGCGGAAGGGGACGCGGAGCGGACTCGGGTGCGCGAAGGCTCCTCTCTCACTCGCGCA GCCGCTACCTCGGTTGCGAGCCCACGAGGCCTCCGCGTCTTGCCCTCGGAACAATGGGAC TCGGCTCGCGAGGTTTCTTGGCGGTGCTGGCTCTAGGGGCCGTGCTGGCGATAGCGCTGC TGAAGATTGTCGCCGACAGCACAGACTTGGAGGAATCTGCAGACAAGAAGAATTCTATGT CTCTAAAAGGCAACGGTGCTGACCCAACAGCCCTGCAGGTGCCTTTAGGCCGTACAAATG AATCTTCTAACTTCACTGTGAAACTATCAGCAACTCAAGTTTCCCCAGTCTCAAAGGTGA CAACTACCACCTCGAAACCCATAGCAAAATCGTCAACAACTCCAGTTTCTTCAAAGAATT CAACAACCCCCACTTTGAAAACCACAGCAAAACCATCAACAACTCCTGTTTCCTCAGTCT CCAAGAATGCAACAGCCGCCACCTTGAAACCCATAGCAACAACTAAAATGACACCACAGG TCTCAACAAATACGACTTCCACCACCATAAGGTCTACACCCAAAATAACAAGTGTTTCAC AGAATATATCCCAGATGTCAACATCCACAATGAACACAACCCACAATAGTTCGGTGACAT CTGTTTCTCCATCAGTAACAATCACAGCAACTATTAATTCTAAGGAAAATAAAGGATCAA AATTTGATACCGGCAGCTTTGTTGGTGGTATTGTATTAACACTGGGAGTTTTATCTTTTC TTTACATTGGCTGCAAAATGTATTATTCAAGAAGAGGCATTCGGTATAGAACCATTGACG AACATGATGCCATCATTTAAGGGACTCTAAGGACCAAAAGAAAGAAGAAAGATTGATGCA GCCCTATCATTCTCTTCTTGAAAATAGCTAAACAGGCCATGCATATAATGTACAATGTAT TATATAAGTATGTAAAGATTCCTTGTGATTACTAAAGGTAAAAAGGGTTTGGTTTGGGTT TTTTAATGAACATATAGAGCATACCAGTTAATTCAATAGCTATAATATTCATTTTTGGAA AACATAATAAGACAAGTCCTGTCCATTTTCTGTGGCATTGGTTGCCTAGGGCCGGTAATT GGAAGACATTATCACTGAAGGGCATGATGCCATCTGGTCACACAAATAAGGAGCTTGTCC AAACGCTTTTGATGTCCTTTCTGCTCACACAAAGAACCTCAGTGCGATTAAGAGCTGAAT GTATCCTAATTACCAATGTCACGTAGCAGAAATTATATGAACAAACCAATATGAATAAAC CAAGCCGTAAGTATAATTTTAGTTTAAGTGTCTCTACAGAGGCATCGATAATACATATGT TTAAAGCTTAGTTATTTGGTTTAGAAATAAAATTCATACCCTCTCCCACCAAAGTATAGA ACTAGAAACAATACCTGGGTTTATCCTTGTTAGCCATTGGTGAGCATGTACTTTCAATAA CTTCTTTTGAGCTTTCAATGGCTATTGATGTAATTACCTTTTTTTCCCTCTATAATTTCA GTAAAATGCGATGTTTAACATGAGAATATTTTAAAGACTTAGTTGTTTTAAAAAGATTAT TTGCTACTGTGAGAATATTGTCAGCACTGGAAGTTGCTTTATTTCATATTCAGCTATTGA TTTTATATTTAGTGAATATTTTAACAGACGTAGGACTGCTCTCAATATTTAGAAATTAAA TAATGTAAACAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 547-663, - strand, RNAz p=0.94721 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 547-663, - strand, RNAz p=0.94721 |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 471-712, gnl|bosTau2|chr15 (2423372-2423619) | |
| 471-712, gnl|canFam2|chr5 (32287204-32286958) | |
| 471-712, gnl|dasNov1|scaffold_43143 (7437-7735) | |
| 471-712, gnl|dasNov1|scaffold_43143 (7729-7442) | |
| 471-712, gnl|echTel1|scaffold_219953 (8531-8804) | |
| 471-712, gnl|echTel1|scaffold_311378 (90075-90372) | |
| 471-712, gnl|hg17|chr1 (172426071-172426371) | |
| 471-712, gnl|hg17|chr11 (101777858-101778149) | |
| 471-712, gnl|loxAfr1|scaffold_51144 (11124-11398) | |
| 471-712, gnl|loxAfr1|scaffold_51144 (11381-11120) | |
| 471-712, gnl|mm7|chr1 (159506106-159505849) | |
| 471-712, gnl|mm7|chr9 (7790066-7789799) | |
| 471-712, gnl|monDom2|scaffold_65 (7540834-7541101) | |
| 471-712, gnl|oryCun1|scaffold_168638 (5022-5304) | |
| 471-712, gnl|oryCun1|scaffold_213523 (53409-53185) | |
| 471-712, gnl|panTro1|chr1 (154829023-154829322) | |
| 471-712, gnl|panTro1|chr9 (103746235-103746526) | |
| 471-712, gnl|rheMac2|chr1 (205328898-205329198) | |
| 471-712, gnl|rheMac2|chr14 (100988418-100988706) | |
| 471-712, gnl|rn3|chr13 (74768361-74768611) | |
| 471-712, gnl|rn3|chr8 (4629748-4629490) | |
| 742-895, gnl|bosTau2|chr15 (2424748-2424901) | |
| 742-895, gnl|canFam2|chr5 (32288540-32288386) | |
| 742-895, gnl|dasNov1|scaffold_43143 (7884-7730) | |
| 742-895, gnl|echTel1|scaffold_311378 (88758-88912) | |
| 742-895, gnl|hg17|chr11 (101777480-101777634) | |
| 742-895, gnl|Hg17|chr11 (101777633-101777480) | |
| 742-895, gnl|mm7|chr9 (7790423-7790269) | |
| 742-895, gnl|Mm7|chr9 (7790268-7790421) | |
| 742-895, gnl|monDom2|scaffold_65 (7538481-7538632) | |
| 742-895, gnl|oryCun1|scaffold_168638 (4667-4821) | |
| 742-895, gnl|panTro1|chr9 (103745861-103746015) | |
| 742-895, gnl|rheMac2|chr14 (100988044-100988198) | |
| 742-895, gnl|rn3|chr8 (4630103-4629949) | |
| 969-1811, gnl|bosTau2|chr15 (2427820-2428666) | |
| 969-1811, gnl|Hg17|chr11 (101774726-101773863) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 471-712, gnl|bosTau2|chr15 (2423372-2423619) | |
| 471-712, gnl|canFam2|chr5 (32287204-32286958) | |
| 471-712, gnl|dasNov1|scaffold_43143 (7437-7735) | |
| 471-712, gnl|dasNov1|scaffold_43143 (7729-7442) | |
| 471-712, gnl|echTel1|scaffold_219953 (8531-8804) | |
| 471-712, gnl|echTel1|scaffold_311378 (90075-90372) | |
| 471-712, gnl|hg17|chr1 (172426071-172426371) | |
| 471-712, gnl|hg17|chr11 (101777858-101778149) | |
| 471-712, gnl|loxAfr1|scaffold_51144 (11124-11398) | |
| 471-712, gnl|loxAfr1|scaffold_51144 (11381-11120) | |
| 471-712, gnl|mm7|chr1 (159506106-159505849) | |
| 471-712, gnl|mm7|chr9 (7790066-7789799) | |
| 471-712, gnl|monDom2|scaffold_65 (7540834-7541101) | |
| 471-712, gnl|oryCun1|scaffold_168638 (5022-5304) | |
| 471-712, gnl|oryCun1|scaffold_213523 (53409-53185) | |
| 471-712, gnl|panTro1|chr1 (154829023-154829322) | |
| 471-712, gnl|panTro1|chr9 (103746235-103746526) | |
| 471-712, gnl|rheMac2|chr1 (205328898-205329198) | |
| 471-712, gnl|rheMac2|chr14 (100988418-100988706) | |
| 471-712, gnl|rn3|chr13 (74768361-74768611) | |
| 471-712, gnl|rn3|chr8 (4629748-4629490) | |
| 742-895, gnl|bosTau2|chr15 (2424748-2424901) | |
| 742-895, gnl|canFam2|chr5 (32288540-32288386) | |
| 742-895, gnl|dasNov1|scaffold_43143 (7884-7730) | |
| 742-895, gnl|echTel1|scaffold_311378 (88758-88912) | |
| 742-895, gnl|hg17|chr11 (101777480-101777634) | |
| 742-895, gnl|Hg17|chr11 (101777633-101777480) | |
| 742-895, gnl|mm7|chr9 (7790423-7790269) | |
| 742-895, gnl|Mm7|chr9 (7790268-7790421) | |
| 742-895, gnl|monDom2|scaffold_65 (7538481-7538632) | |
| 742-895, gnl|oryCun1|scaffold_168638 (4667-4821) | |
| 742-895, gnl|panTro1|chr9 (103745861-103746015) | |
| 742-895, gnl|rheMac2|chr14 (100988044-100988198) | |
| 742-895, gnl|rn3|chr8 (4630103-4629949) | |
| 969-1811, gnl|bosTau2|chr15 (2427820-2428666) | |
| 969-1811, gnl|Hg17|chr11 (101774726-101773863) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| liv (0.731422) | |
| cbl (0.573987) | |
| cty (0.41632) | |
| spl (0.286369) | |
| bla (0.248694) | |
| med (0.232504) | |
| nlu (0.191681) | |
| eye (0.170503) | |
| tbr (0.154178) | |
| lin (0.145603) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| thg (0.126791) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| liv (0.731422) | |
| cbl (0.573987) | |
| cty (0.41632) | |
| spl (0.286369) | |
| bla (0.248694) | |
| med (0.232504) | |
| nlu (0.191681) | |
| eye (0.170503) | |
| tbr (0.154178) | |
| lin (0.145603) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| thg (0.126791) |