Non-Coding RNA Search

Ss1.1-Thy1-THY010022C02.5

Sequence:


               
               AGAGCCCGGCCGCGGCGCTATCACTGACGTGTCTCTCGGCGAGGCGCGGCGCCCCGGACC
AGGCCGGGCGGGCAGTAGAGCTGCACTCGCAGCGCAGCGGAGCCGGAGCGCGACCCGGAG
CCCGACCTGGAGCCCAGCAGCCGCCGCCATGGCGATCAAGTTTCTGGAGGTCATCAAGCC
CTTCTGTGTCATCCTGCCAGAAATTCAGAAGCCGGAGCGGAAGATTCAGTTTAAGGAGAA
AGTGCTATGGACTGCCATCACCCTCTTCATCTTCTTGGTCTGCTGCCAGATCCCCCTGTT
TGGCATCATGTCTTCAGACTCAGCCGACCCTTTCTATTGGATGAGAGTGATCCTTGCCTC
AAACAGAGGCACATTGATGGAGCTCGGTATCTCTCCCATTGTCACTTCTGGCCTCATCAT
GCAGCTCTTGGCTGGCGCCAAAATAATTGAAGTTGGTGACACCCCAAAAGACCGAGCCCT
CTTCAACGGAGCTCAGAAGTTATTTGGCATGATCATCACCATTGGCCAGTCCATCGTGTA
TGTGATGACGGGGATGTATGGAGACCCTTCTGAAATGGGGGCTGGGATCTGCCTGTTGAT
CACCATACAGCTCTTTGTTGCTGGCCTGATTGTTCTGCTTCTGGATGAACTTCTGCAAAA
GGGGTATGGCCTGGGCTCTGGGATCTCCCTCTTCATTGCCACAAACATCTGCGAGACCAT
CGTGTGGAAGGCTTTCAGCCCTACCACTGTCAACACTGGCCGAGGAATGGAGTTTGAAGG
TGCCATCATTGCCCTGTTCCACCTGCTGGCCACACGCACGGACAAGGTCCGGGCCCTTCG
AGAGGCCTTCTACCGCCAGAATCTCCCCAACCTCATGAATCTGATTGCCACCATCTTTGT
CTTTGCCGTGGTCATCTACTTCCAGGGCTTCCGCGTGGACCTGCCGATCAAGTCAGCCCG
TTACCGAGGCCAGTACAACACCTACCCTATCAAGCTCTTCTATACCTCCAACATCCCCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGCCCGGCCGCGGCGCTATCACTGACGTGTCTCTCGGCGAGGCGCGGCGCCCCGGACC
AGGCCGGGCGGGCAGTAGAGCTGCACTCGCAGCGCAGCGGAGCCGGAGCGCGACCCGGAG
CCCGACCTGGAGCCCAGCAGCCGCCGCCATGGCGATCAAGTTTCTGGAGGTCATCAAGCC
CTTCTGTGTCATCCTGCCAGAAATTCAGAAGCCGGAGCGGAAGATTCAGTTTAAGGAGAA
AGTGCTATGGACTGCCATCACCCTCTTCATCTTCTTGGTCTGCTGCCAGATCCCCCTGTT
TGGCATCATGTCTTCAGACTCAGCCGACCCTTTCTATTGGATGAGAGTGATCCTTGCCTC
AAACAGAGGCACATTGATGGAGCTCGGTATCTCTCCCATTGTCACTTCTGGCCTCATCAT
GCAGCTCTTGGCTGGCGCCAAAATAATTGAAGTTGGTGACACCCCAAAAGACCGAGCCCT
CTTCAACGGAGCTCAGAAGTTATTTGGCATGATCATCACCATTGGCCAGTCCATCGTGTA
TGTGATGACGGGGATGTATGGAGACCCTTCTGAAATGGGGGCTGGGATCTGCCTGTTGAT
CACCATACAGCTCTTTGTTGCTGGCCTGATTGTTCTGCTTCTGGATGAACTTCTGCAAAA
GGGGTATGGCCTGGGCTCTGGGATCTCCCTCTTCATTGCCACAAACATCTGCGAGACCAT
CGTGTGGAAGGCTTTCAGCCCTACCACTGTCAACACTGGCCGAGGAATGGAGTTTGAAGG
TGCCATCATTGCCCTGTTCCACCTGCTGGCCACACGCACGGACAAGGTCCGGGCCCTTCG
AGAGGCCTTCTACCGCCAGAATCTCCCCAACCTCATGAATCTGATTGCCACCATCTTTGT
CTTTGCCGTGGTCATCTACTTCCAGGGCTTCCGCGTGGACCTGCCGATCAAGTCAGCCCG
TTACCGAGGCCAGTACAACACCTACCCTATCAAGCTCTTCTATACCTCCAACATCCCCAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|40538882|ref|NP_954865.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|40538882|ref|NP_954865.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               802-921, - strand, RNAz p=0.801246

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               802-921, - strand, RNAz p=0.801246

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               105-602, gnl|bosTau2|chr13 (32976104-32976590)
               

               
               105-602, gnl|Hg17|chr7 (128300478-128300023)
               


               
               763-932, gnl|bosTau2|chr22 (47084323-47084153)
               

               
               763-932, gnl|canFam2|chr20 (5085826-5085992)
               

               
               763-932, gnl|danRer3|chrUn (106206287-106206122)
               

               
               763-932, gnl|dasNov1|scaffold_39253 (10744-10910)
               

               
               763-932, gnl|echTel1|scaffold_169947 (7005-6839)
               

               
               763-932, gnl|fr1|chrUn (57791823-57791657)
               

               
               763-932, gnl|galGal2|chr12 (9565040-9564876)
               

               
               763-932, gnl|hg17|chr3 (129266416-129266582)
               

               
               763-932, gnl|Hg17|chr3 (129266416-129266586)
               

               
               763-932, gnl|loxAfr1|scaffold_8280 (36442-36608)
               

               
               763-932, gnl|mm7|chr6 (88583819-88583653)
               

               
               763-932, gnl|Mm7|chr6 (88583817-88583647)
               

               
               763-932, gnl|monDom2|scaffold_5 (46619592-46619758)
               

               
               763-932, gnl|oryCun1|scaffold_198424 (201141-200975)
               

               
               763-932, gnl|panTro1|chr2 (131150979-131151145)
               

               
               763-932, gnl|rheMac2|chr11 (86784842-86784676)
               

               
               763-932, gnl|rn3|chr4 (122847375-122847209)
               

               
               763-932, gnl|tetNig1|chr11 (1780715-1780881)
               

               
               763-932, gnl|xenTro1|scaffold_72 (781460-781626)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               105-602, gnl|bosTau2|chr13 (32976104-32976590)
               

               
               105-602, gnl|Hg17|chr7 (128300478-128300023)
               


               
               763-932, gnl|bosTau2|chr22 (47084323-47084153)
               

               
               763-932, gnl|canFam2|chr20 (5085826-5085992)
               

               
               763-932, gnl|danRer3|chrUn (106206287-106206122)
               

               
               763-932, gnl|dasNov1|scaffold_39253 (10744-10910)
               

               
               763-932, gnl|echTel1|scaffold_169947 (7005-6839)
               

               
               763-932, gnl|fr1|chrUn (57791823-57791657)
               

               
               763-932, gnl|galGal2|chr12 (9565040-9564876)
               

               
               763-932, gnl|hg17|chr3 (129266416-129266582)
               

               
               763-932, gnl|Hg17|chr3 (129266416-129266586)
               

               
               763-932, gnl|loxAfr1|scaffold_8280 (36442-36608)
               

               
               763-932, gnl|mm7|chr6 (88583819-88583653)
               

               
               763-932, gnl|Mm7|chr6 (88583817-88583647)
               

               
               763-932, gnl|monDom2|scaffold_5 (46619592-46619758)
               

               
               763-932, gnl|oryCun1|scaffold_198424 (201141-200975)
               

               
               763-932, gnl|panTro1|chr2 (131150979-131151145)
               

               
               763-932, gnl|rheMac2|chr11 (86784842-86784676)
               

               
               763-932, gnl|rn3|chr4 (122847375-122847209)
               

               
               763-932, gnl|tetNig1|chr11 (1780715-1780881)
               

               
               763-932, gnl|xenTro1|scaffold_72 (781460-781626)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               nca (0.136874)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               ecc (0.115035)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nca (0.136874)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               ecc (0.115035)

	105-602, gnl\|bosTau2\|chr13 (32976104-32976590)
	105-602, gnl\|Hg17\|chr7 (128300478-128300023)

	763-932, gnl\|bosTau2\|chr22 (47084323-47084153)
	763-932, gnl\|canFam2\|chr20 (5085826-5085992)
	763-932, gnl\|danRer3\|chrUn (106206287-106206122)
	763-932, gnl\|dasNov1\|scaffold_39253 (10744-10910)
	763-932, gnl\|echTel1\|scaffold_169947 (7005-6839)
	763-932, gnl\|fr1\|chrUn (57791823-57791657)
	763-932, gnl\|galGal2\|chr12 (9565040-9564876)
	763-932, gnl\|hg17\|chr3 (129266416-129266582)
	763-932, gnl\|Hg17\|chr3 (129266416-129266586)
	763-932, gnl\|loxAfr1\|scaffold_8280 (36442-36608)
	763-932, gnl\|mm7\|chr6 (88583819-88583653)
	763-932, gnl\|Mm7\|chr6 (88583817-88583647)
	763-932, gnl\|monDom2\|scaffold_5 (46619592-46619758)
	763-932, gnl\|oryCun1\|scaffold_198424 (201141-200975)
	763-932, gnl\|panTro1\|chr2 (131150979-131151145)
	763-932, gnl\|rheMac2\|chr11 (86784842-86784676)
	763-932, gnl\|rn3\|chr4 (122847375-122847209)
	763-932, gnl\|tetNig1\|chr11 (1780715-1780881)
	763-932, gnl\|xenTro1\|scaffold_72 (781460-781626)