Non-Coding RNA Search

Ss1.1-Thy1-THY010023B04.5

Sequence:


               
               GAGCATCTTTTATTCTGCTTTAAGGCCTCCTTGCCCCCGCGCCCCGGCAGTAGGCTTTGT
CCAGAGGGGCTACACAGTGTTCTGGCCGCCGATGCCTCATCTCTGCTGTGCTGACACGGT
CCCCCCAGCAGGCCACTCAGCGGCCCCACAGCAGGATCTCCTCTGTGGCCAGGTGCATCA
GGGCGTGGAAGTTCAGGTGCAGGTATTTTCTCCAGAAGCGCCGGTCCCGCCCGTACACCT
GGGCTGGATAGCGGGGACTCCCAATGCCGTGGAAGACGCGGGCTACAGCCCTGCCTGAGA
ACTGCTGCTCAGGCCACGAGGACAGCAGGTGGCGGATGTCCCGTCGGATCTGAGCCTCCC
AGTCCTGGAGCGTGGCCTGGCCTGGCTCGGGGCCCTCACGAGGACAGCAGGTGGCGGATG
TCCCGTCGGATCCAAAGTAGCGGCGGAGCAGGGCCTTGAGCCTGCCACTGCGTTCCTCAT
CGGGCTGCTCCAGGCACGGCCCACAGCTGGGGAAGGCCACGCTGTGAAAAGCCCAGTAGG
TGTGGTGCAGGCGGGCCAGGGCTTCTCGCTCTCGGGCCTGCACGCGTCCATGTAGGAAGT
CACAGATCTGATCCTTCTCCTGGGCGGTCAGGTCCCCGGGGGAGCGCAGGTGGAAGGCTA
GCACCTTGAAATCCACTAGCACCCCCGTGCCCCGAGGCAGACCTGTCCTGGGCTCCGGGT
CCCACTGTAGCTGCCGGAGGGCCCGCCGCACGGGGGCCAGCTCCCAGCCCATGGAGTCTG
CCAGCTCCACCACATCGAACTCCACAGAAGCTGTGTTCTCAGGGCTCTGCTGGGCTAAGC
ACGCAGCCAGGGGAGGACACCTGCGGGCCAGGGCCTGGAGCTGGGTGGGGCCCCCAGGGC
AGCGCAGGTGGCAGCGGGCATAGGTGGGTTCCAGCAGCTTCAGCCAGCGCTGTGGGTGCA
GCTCCAGGTAGCAGAGCAGGGTCTCAATGGCCTCCTCGGGCACATCCAGGGCCTGCACCA
TTGGCTGCACTGGGAGTGCCCGCTCGTGGCCCGGGCACCGGGCTGTGAGCTCCACGTGGG
GGTGGTCGGCATCCCGGGGGACTGTGGCCGCCGAGCTCTCCTGGCTCTCGCCTGGGTCAG
GCACCAGGGGCTGCTGAGCGTGGCCGCAAGCAGGGAACACGTGCTGCACCAGCTTCTTCA
CGGCGAGGAAGTCGATGGCGTCGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCATCTTTTATTCTGCTTTAAGGCCTCCTTGCCCCCGCGCCCCGGCAGTAGGCTTTGT
CCAGAGGGGCTACACAGTGTTCTGGCCGCCGATGCCTCATCTCTGCTGTGCTGACACGGT
CCCCCCAGCAGGCCACTCAGCGGCCCCACAGCAGGATCTCCTCTGTGGCCAGGTGCATCA
GGGCGTGGAAGTTCAGGTGCAGGTATTTTCTCCAGAAGCGCCGGTCCCGCCCGTACACCT
GGGCTGGATAGCGGGGACTCCCAATGCCGTGGAAGACGCGGGCTACAGCCCTGCCTGAGA
ACTGCTGCTCAGGCCACGAGGACAGCAGGTGGCGGATGTCCCGTCGGATCTGAGCCTCCC
AGTCCTGGAGCGTGGCCTGGCCTGGCTCGGGGCCCTCACGAGGACAGCAGGTGGCGGATG
TCCCGTCGGATCCAAAGTAGCGGCGGAGCAGGGCCTTGAGCCTGCCACTGCGTTCCTCAT
CGGGCTGCTCCAGGCACGGCCCACAGCTGGGGAAGGCCACGCTGTGAAAAGCCCAGTAGG
TGTGGTGCAGGCGGGCCAGGGCTTCTCGCTCTCGGGCCTGCACGCGTCCATGTAGGAAGT
CACAGATCTGATCCTTCTCCTGGGCGGTCAGGTCCCCGGGGGAGCGCAGGTGGAAGGCTA
GCACCTTGAAATCCACTAGCACCCCCGTGCCCCGAGGCAGACCTGTCCTGGGCTCCGGGT
CCCACTGTAGCTGCCGGAGGGCCCGCCGCACGGGGGCCAGCTCCCAGCCCATGGAGTCTG
CCAGCTCCACCACATCGAACTCCACAGAAGCTGTGTTCTCAGGGCTCTGCTGGGCTAAGC
ACGCAGCCAGGGGAGGACACCTGCGGGCCAGGGCCTGGAGCTGGGTGGGGCCCCCAGGGC
AGCGCAGGTGGCAGCGGGCATAGGTGGGTTCCAGCAGCTTCAGCCAGCGCTGTGGGTGCA
GCTCCAGGTAGCAGAGCAGGGTCTCAATGGCCTCCTCGGGCACATCCAGGGCCTGCACCA
TTGGCTGCACTGGGAGTGCCCGCTCGTGGCCCGGGCACCGGGCTGTGAGCTCCACGTGGG
GGTGGTCGGCATCCCGGGGGACTGTGGCCGCCGAGCTCTCCTGGCTCTCGCCTGGGTCAG
GCACCAGGGGCTGCTGAGCGTGGCCGCAAGCAGGGAACACGTGCTGCACCAGCTTCTTCA
CGGCGAGGAAGTCGATGGCGTCGG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|39644917|gb|AAH13277.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|39644917|gb|AAH13277.2|

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               126-432, gnl|bosTau2|chr14 (3254065-3253751)
               

               
               126-432, gnl|Hg17|chr8 (145707613-145707960)
               

               
               126-432, gnl|Mm7|chr15 (76786282-76786594)
               


               
               522-705, gnl|bosTau2|chr14 (3253337-3253154)
               

               
               522-705, gnl|Hg17|chr8 (145708335-145708518)
               

               
               522-705, gnl|Mm7|chr15 (76787028-76787211)
               


               
               858-991, gnl|bosTau2|chr14 (3252841-3252708)
               

               
               858-991, gnl|Hg17|chr8 (145708830-145708963)
               

               
               858-991, gnl|Mm7|chr15 (76787536-76787669)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               126-432, gnl|bosTau2|chr14 (3254065-3253751)
               

               
               126-432, gnl|Hg17|chr8 (145707613-145707960)
               

               
               126-432, gnl|Mm7|chr15 (76786282-76786594)
               


               
               522-705, gnl|bosTau2|chr14 (3253337-3253154)
               

               
               522-705, gnl|Hg17|chr8 (145708335-145708518)
               

               
               522-705, gnl|Mm7|chr15 (76787028-76787211)
               


               
               858-991, gnl|bosTau2|chr14 (3252841-3252708)
               

               
               858-991, gnl|Hg17|chr8 (145708830-145708963)
               

               
               858-991, gnl|Mm7|chr15 (76787536-76787669)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fce (0.271592)
               

               
               nbm (0.198649)
               

               
               ill (0.175593)
               

               
               nmm (0.132802)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               nbm (0.198649)
               

               
               ill (0.175593)
               

               
               nmm (0.132802)

	126-432, gnl\|bosTau2\|chr14 (3254065-3253751)
	126-432, gnl\|Hg17\|chr8 (145707613-145707960)
	126-432, gnl\|Mm7\|chr15 (76786282-76786594)

	522-705, gnl\|bosTau2\|chr14 (3253337-3253154)
	522-705, gnl\|Hg17\|chr8 (145708335-145708518)
	522-705, gnl\|Mm7\|chr15 (76787028-76787211)

	858-991, gnl\|bosTau2\|chr14 (3252841-3252708)
	858-991, gnl\|Hg17\|chr8 (145708830-145708963)
	858-991, gnl\|Mm7\|chr15 (76787536-76787669)