Non-Coding RNA Search

Ss1.1-Thy1-THY010023C02.5

Sequence:


               
               ACACATGACATAAGCAGCCCGCGCCTGCAGAGGTGAGGGCGCCAGGCCCGCGGAGAAGCA
CGTTGCCCGCCTGCTTCAGTTCTCAAGCACTATGGCGGCCCCCGTCCAGCAGCCTCTTCA
GCCTGGTGGCGGGAAGCGCAAGGGCAAGGCTCAGTACCTGCAGGCCAAGCGGGCTCGGCG
CTGCGAAGGCGGCGGGCCCCGGCAGTTGGAGCCGGGGCTACAGGGCATTCTCATCACCTG
CAACATGAATGAGCGCAAGTGTGTGGAGGAGGCCTACAGTCTGCTCAACGAATACGGCGA
CGACATGTACGGGCCAGAAAAGTTTTCAGACAAGGATCAGCAACCCTCAGGGAGTGAGGG
AGAAGACGATGATGATGTGGAGGCTGCCTTGAAGAAAGAAGTTGGTGACATTAAGGCATC
CACAGAGATGAGGTTAAGAAGATTCCAGTCAGTGGAGAGTGGAGCAAATAATGTCGTCTT
CATCAGGACTCTTGGCATAGAACCTGAGAAATTAGTGCATCATATTCTCCAAGATATGTA
CAAAACCAAGAAGAAGAAGACTCGAGTTATTCTACGAATGTTACCCATCTCAGGCACATG
CAAGGCTTTCTTAGAAGATATGAAAAAATACGCAGAAACATTTTTGGAACCTTGGTTTAA
AGCTCCAAACAAAGGAACATTTCAGATTGTATACAAATCTCGGAATAATAGTCATATGAA
TAGAGAAGAAGTTATCAAAGAATTGGCAGGAATAGTAGGCAGCCTTAATTCGGAAAATAA
AGTGGATCTTACCAATCCACAGTACACCGTGGTAGTAGAAATCATTAAAGCTGTCTGCTG
CCTGAGTGTTGTGAAGGATTACACGTTGCTCAGAAAATACAATCTCCAGGAAGTGGTGAA
GAGTGCCAAGGACTCATCACAGCTTAACCCGAAGCAGGCAGCACAAGCAGGAAATGGTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACACATGACATAAGCAGCCCGCGCCTGCAGAGGTGAGGGCGCCAGGCCCGCGGAGAAGCA
CGTTGCCCGCCTGCTTCAGTTCTCAAGCACTATGGCGGCCCCCGTCCAGCAGCCTCTTCA
GCCTGGTGGCGGGAAGCGCAAGGGCAAGGCTCAGTACCTGCAGGCCAAGCGGGCTCGGCG
CTGCGAAGGCGGCGGGCCCCGGCAGTTGGAGCCGGGGCTACAGGGCATTCTCATCACCTG
CAACATGAATGAGCGCAAGTGTGTGGAGGAGGCCTACAGTCTGCTCAACGAATACGGCGA
CGACATGTACGGGCCAGAAAAGTTTTCAGACAAGGATCAGCAACCCTCAGGGAGTGAGGG
AGAAGACGATGATGATGTGGAGGCTGCCTTGAAGAAAGAAGTTGGTGACATTAAGGCATC
CACAGAGATGAGGTTAAGAAGATTCCAGTCAGTGGAGAGTGGAGCAAATAATGTCGTCTT
CATCAGGACTCTTGGCATAGAACCTGAGAAATTAGTGCATCATATTCTCCAAGATATGTA
CAAAACCAAGAAGAAGAAGACTCGAGTTATTCTACGAATGTTACCCATCTCAGGCACATG
CAAGGCTTTCTTAGAAGATATGAAAAAATACGCAGAAACATTTTTGGAACCTTGGTTTAA
AGCTCCAAACAAAGGAACATTTCAGATTGTATACAAATCTCGGAATAATAGTCATATGAA
TAGAGAAGAAGTTATCAAAGAATTGGCAGGAATAGTAGGCAGCCTTAATTCGGAAAATAA
AGTGGATCTTACCAATCCACAGTACACCGTGGTAGTAGAAATCATTAAAGCTGTCTGCTG
CCTGAGTGTTGTGAAGGATTACACGTTGCTCAGAAAATACAATCTCCAGGAAGTGGTGAA
GAGTGCCAAGGACTCATCACAGCTTAACCCGAAGCAGGCAGCACAAGCAGGAAATGGTAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q8BNB9_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8BNB9_MOUSE

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               42-329, gnl|bosTau2|chr25 (18400908-18400621)
               

               
               42-329, gnl|Hg17|chr16 (20660619-20660325)
               

               
               42-329, gnl|Mm7|chr7 (115643057-115642787)
               


               
               498-753, gnl|bosTau2|chr25 (18398213-18397958)
               

               
               498-753, gnl|Hg17|chr16 (20656782-20656527)
               

               
               498-753, gnl|Mm7|chr7 (115640556-115640301)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               42-329, gnl|bosTau2|chr25 (18400908-18400621)
               

               
               42-329, gnl|Hg17|chr16 (20660619-20660325)
               

               
               42-329, gnl|Mm7|chr7 (115643057-115642787)
               


               
               498-753, gnl|bosTau2|chr25 (18398213-18397958)
               

               
               498-753, gnl|Hg17|chr16 (20656782-20656527)
               

               
               498-753, gnl|Mm7|chr7 (115640556-115640301)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               fbs (0.175346)
               

               
               cut (0.169924)
               

               
               lun (0.150489)
               

               
               cst (0.140036)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)
               

               
               cut (0.169924)
               

               
               lun (0.150489)
               

               
               cst (0.140036)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

	42-329, gnl\|bosTau2\|chr25 (18400908-18400621)
	42-329, gnl\|Hg17\|chr16 (20660619-20660325)
	42-329, gnl\|Mm7\|chr7 (115643057-115642787)

	498-753, gnl\|bosTau2\|chr25 (18398213-18397958)
	498-753, gnl\|Hg17\|chr16 (20656782-20656527)
	498-753, gnl\|Mm7\|chr7 (115640556-115640301)

	fbs (0.175346)
	cut (0.169924)
	lun (0.150489)
	cst (0.140036)
	jca (0.11396)
	cty (0.10408)