Ss1.1-Thy1-THY010026A09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGTCCGGAACTGGCGGGGGGAGGCGGCAACATTGTTTCAAGTTGGACAAATTGACAAGA GCGAGAGATACGCTGCGTTCCATCCCGACCTGGGGCCGCCGTGCAGGGCCCTGTTTCCCC CTCCTCGGCCCCCGAGAGCTGGGTGCCGCTTTCTGCTGGGTTCCCAGGCCCCCGCTCCAG GGCCGGGCTGATTCGACTCGCTAGCGCTTCATGGAGAACTTCCAAAAAGTGGAAAAGATC GGAGAGGGCACGTACGGAGTTGTGTACAAAGCCAAAAACAAGGTGACGGGAGAAGTGGTG GCGCTTAAAAAAATCCGCCTGGACACTGAGACGGAGGGTGTACCCAGTACTGCCATTCGA GAGATCTCTCTGCTTAAGGAGCTTAACCACCCTAATATTGTCAAGTTGCTGGATGTCATT CACACAGAAAACAAACTCTACCTGGTTTTTGAGTTTCTGCACCAGGATCTCAAGAAATTC ATGGATGCCTCTGCTCTCACTGGCATTCCTCTTCCCCTCATAAAGAGTTATCTGTTCCAG CTGCTTCAGGGGCTAGCTTTTTGCCATTCTCATCGGGTCTTGCACCGAGACCTTAAACCT CAGAATCTGCTTATCAACGCAGAAGGATCTATCAAGTTAGCAGACTTTGGACTGGCCAGA GCCTTTGGAGTCCCTGTTCGTACATACACCCATGAGGTGGTGACTTTGTGGTACAGAGCA CCTGAAATCCTTCTGGGCTGCAAATACTACTCTACAGCCGTGGACATCTGGAGCCTGGGC TGCATCTTTGCTGAGATGGTGACCCGCCGGGCTCTGTTCCCTGGAGATTCTGAGATTGAC CAGCTCTTCCGGATCTTTCGGACTCTTGGGACCCCAGATGAGGTGGTTTGGCCAGGAGTT ACTTCCATGCCTGATTATAAACCGAGTTTCCCTAAGTGGGCCAGGCAAGATTTTAGCAAA GTTGTGCCTCCCCTGGATGAAGATGGACGGAGCTTGTTATCGCAAATGCTGCACTACGAC CCCAACAAGCGGATTTCAGCAAAGGCAGCTCTGGCTCACCCTTTCTTCCAGGATGTGACC AAGCCAGTACCTCACCTTCGACTTTGATGGCCTTTGTGAACCCTACCCCTCGTCTCACCC TCTCCTCCAGTGGGGGCCTGATCTGGCTTGGCCCAGGGCTTTTAGCCCACTGTTCTTGTC TGGCTGCCTTAGCACTCACCTGCTCCTCTCAGCCAGCCAACTTTGGAGAAACAGGGGGTA GAGGGGAGCAATAGGTGAAATTGAAAGGAAGCTTCAGTATTAGATGCACTTAAGTCAGCC TCCACCACCCTCCCCCCCTCCTCTTAGTCGTTACTTATGAGAGCTGGTATTTAAAAAAAA CAAAAAAAAAGACTGACTCTTTCTCCTCCCACCACACAGGGATTGCCATCCAGTCTCTGA AAGCCCAGAAATTATTTTCTGTGTTTGGGAGACCCCAAATCTCCTGCAGCCATTGCGTAA AGCTAACTGATAACAGCGGGGCTAAGTTGGAACTTTTGAAACCCAAGCAAAACAGAAACA TAGGGAGGGACCTGTTTTAAAGAATTAGGTTAAAAAAATAGATCCAACCAGTTTATGCCC TAGTTGTAGTGTTTCATCTCACCTAACAGTCTGGGAGATTCAAGACTCCCAGTCTCTGCG GTGCTAGTGAGGCGGCAGTAGAAATGGTTGCTCCTAGTCTTCTTGCCTGTCCCTCCTACA GGCAAGAGGTGTCTGGGACGCTCTGGGACAAAGACAATGCTTCACTGAGGCCTTAAGAGG CAAGTGAAAAATGTTTGAATTTTTCTCTTCCTTTTAAGAGTCTTAGTTCATCAGGTGCTA AGTCCTATCTTCCTCTGAAGGCCACCCTCATAAGAGTGAAAGTTAAGGTTTAGACATCGT TTTGAGAATGCTGACACTTTTTTAGGGCTGTGACTGAGTGGGGGCATTGGGGAAAAAATA TTTCTTTAAAAGAAGGATGAACAATTATATTTATATTTCAGGTTATAGTAGTTTTTTAAG TGGGAATGGGTGGATTTGTTGCCCTGTGCACCTTGGGGTTTATAATGCAAATGTTTTAAA AAAATTTTTTTTTCTTTTTATGATTTTGTCTCTTTCCTCCAACCTTTTGTCCTTGAGTGT TCTTGCTGTTAACATTATTTGTAATTTAGTTTATAATTCATTAAAAAAAAGTTCTTAGTT TTAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGTCCGGAACTGGCGGGGGGAGGCGGCAACATTGTTTCAAGTTGGACAAATTGACAAGA GCGAGAGATACGCTGCGTTCCATCCCGACCTGGGGCCGCCGTGCAGGGCCCTGTTTCCCC CTCCTCGGCCCCCGAGAGCTGGGTGCCGCTTTCTGCTGGGTTCCCAGGCCCCCGCTCCAG GGCCGGGCTGATTCGACTCGCTAGCGCTTCATGGAGAACTTCCAAAAAGTGGAAAAGATC GGAGAGGGCACGTACGGAGTTGTGTACAAAGCCAAAAACAAGGTGACGGGAGAAGTGGTG GCGCTTAAAAAAATCCGCCTGGACACTGAGACGGAGGGTGTACCCAGTACTGCCATTCGA GAGATCTCTCTGCTTAAGGAGCTTAACCACCCTAATATTGTCAAGTTGCTGGATGTCATT CACACAGAAAACAAACTCTACCTGGTTTTTGAGTTTCTGCACCAGGATCTCAAGAAATTC ATGGATGCCTCTGCTCTCACTGGCATTCCTCTTCCCCTCATAAAGAGTTATCTGTTCCAG CTGCTTCAGGGGCTAGCTTTTTGCCATTCTCATCGGGTCTTGCACCGAGACCTTAAACCT CAGAATCTGCTTATCAACGCAGAAGGATCTATCAAGTTAGCAGACTTTGGACTGGCCAGA GCCTTTGGAGTCCCTGTTCGTACATACACCCATGAGGTGGTGACTTTGTGGTACAGAGCA CCTGAAATCCTTCTGGGCTGCAAATACTACTCTACAGCCGTGGACATCTGGAGCCTGGGC TGCATCTTTGCTGAGATGGTGACCCGCCGGGCTCTGTTCCCTGGAGATTCTGAGATTGAC CAGCTCTTCCGGATCTTTCGGACTCTTGGGACCCCAGATGAGGTGGTTTGGCCAGGAGTT ACTTCCATGCCTGATTATAAACCGAGTTTCCCTAAGTGGGCCAGGCAAGATTTTAGCAAA GTTGTGCCTCCCCTGGATGAAGATGGACGGAGCTTGTTATCGCAAATGCTGCACTACGAC CCCAACAAGCGGATTTCAGCAAAGGCAGCTCTGGCTCACCCTTTCTTCCAGGATGTGACC AAGCCAGTACCTCACCTTCGACTTTGATGGCCTTTGTGAACCCTACCCCTCGTCTCACCC TCTCCTCCAGTGGGGGCCTGATCTGGCTTGGCCCAGGGCTTTTAGCCCACTGTTCTTGTC TGGCTGCCTTAGCACTCACCTGCTCCTCTCAGCCAGCCAACTTTGGAGAAACAGGGGGTA GAGGGGAGCAATAGGTGAAATTGAAAGGAAGCTTCAGTATTAGATGCACTTAAGTCAGCC TCCACCACCCTCCCCCCCTCCTCTTAGTCGTTACTTATGAGAGCTGGTATTTAAAAAAAA CAAAAAAAAAGACTGACTCTTTCTCCTCCCACCACACAGGGATTGCCATCCAGTCTCTGA AAGCCCAGAAATTATTTTCTGTGTTTGGGAGACCCCAAATCTCCTGCAGCCATTGCGTAA AGCTAACTGATAACAGCGGGGCTAAGTTGGAACTTTTGAAACCCAAGCAAAACAGAAACA TAGGGAGGGACCTGTTTTAAAGAATTAGGTTAAAAAAATAGATCCAACCAGTTTATGCCC TAGTTGTAGTGTTTCATCTCACCTAACAGTCTGGGAGATTCAAGACTCCCAGTCTCTGCG GTGCTAGTGAGGCGGCAGTAGAAATGGTTGCTCCTAGTCTTCTTGCCTGTCCCTCCTACA GGCAAGAGGTGTCTGGGACGCTCTGGGACAAAGACAATGCTTCACTGAGGCCTTAAGAGG CAAGTGAAAAATGTTTGAATTTTTCTCTTCCTTTTAAGAGTCTTAGTTCATCAGGTGCTA AGTCCTATCTTCCTCTGAAGGCCACCCTCATAAGAGTGAAAGTTAAGGTTTAGACATCGT TTTGAGAATGCTGACACTTTTTTAGGGCTGTGACTGAGTGGGGGCATTGGGGAAAAAATA TTTCTTTAAAAGAAGGATGAACAATTATATTTATATTTCAGGTTATAGTAGTTTTTTAAG TGGGAATGGGTGGATTTGTTGCCCTGTGCACCTTGGGGTTTATAATGCAAATGTTTTAAA AAAATTTTTTTTTCTTTTTATGATTTTGTCTCTTTCCTCCAACCTTTTGTCCTTGAGTGT TCTTGCTGTTAACATTATTTGTAATTTAGTTTATAATTCATTAAAAAAAAGTTCTTAGTT TTAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 837-1888, + strand, RNAz p=0.977167 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 837-1888, + strand, RNAz p=0.977167 |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 212-770, gnl|bosTau2|chr16 (50986902-50986344) | |
| 212-770, gnl|Hg17|chr10 (62214467-62221727) | |
| 212-770, gnl|Mm7|chr10 (68949637-68944209) | |
| 798-977, gnl|bosTau2|chr19 (49574870-49574691) | |
| 798-977, gnl|canFam2|chr9 (7631210-7630975) | |
| 798-977, gnl|danRer3|chr11 (1457878-1458108) | |
| 798-977, gnl|dasNov1|scaffold_22862 (23344-23100) | |
| 798-977, gnl|echTel1|scaffold_167980 (753-990) | |
| 798-977, gnl|fr1|chrUn (124266881-124267111) | |
| 798-977, gnl|galGal2|chrUn (75659413-75659651) | |
| 798-977, gnl|hg17|chr17 (71510849-71511087) | |
| 798-977, gnl|Hg17|chr17 (71510870-71511049) | |
| 798-977, gnl|loxAfr1|scaffold_47223 (6888-7123) | |
| 798-977, gnl|mm7|chr11 (116327119-116327355) | |
| 798-977, gnl|Mm7|chr11 (116327138-116327317) | |
| 798-977, gnl|monDom2|scaffold_18 (33846782-33847014) | |
| 798-977, gnl|oryCun1|scaffold_182088 (12152-11920) | |
| 798-977, gnl|panTro1|chr19 (74869506-74869744) | |
| 798-977, gnl|rheMac2|chr16 (71332527-71332765) | |
| 798-977, gnl|rn3|chr10 (106344452-106344687) | |
| 798-977, gnl|tetNig1|chr11 (7144139-7144357) | |
| 798-977, gnl|xenTro1|scaffold_85 (1879825-1880063) | |
| 1788-2230, gnl|bosTau2|chr1 (36103301-36102859) | |
| 1788-2230, gnl|Hg17|chr12 (54652363-54652834) | |
| 1946-2223, gnl|bosTau2|chr14 (28284092-28283828) | |
| 1946-2223, gnl|Hg17|chr12 (54652540-54652833) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 212-770, gnl|bosTau2|chr16 (50986902-50986344) | |
| 212-770, gnl|Hg17|chr10 (62214467-62221727) | |
| 212-770, gnl|Mm7|chr10 (68949637-68944209) | |
| 798-977, gnl|bosTau2|chr19 (49574870-49574691) | |
| 798-977, gnl|canFam2|chr9 (7631210-7630975) | |
| 798-977, gnl|danRer3|chr11 (1457878-1458108) | |
| 798-977, gnl|dasNov1|scaffold_22862 (23344-23100) | |
| 798-977, gnl|echTel1|scaffold_167980 (753-990) | |
| 798-977, gnl|fr1|chrUn (124266881-124267111) | |
| 798-977, gnl|galGal2|chrUn (75659413-75659651) | |
| 798-977, gnl|hg17|chr17 (71510849-71511087) | |
| 798-977, gnl|Hg17|chr17 (71510870-71511049) | |
| 798-977, gnl|loxAfr1|scaffold_47223 (6888-7123) | |
| 798-977, gnl|mm7|chr11 (116327119-116327355) | |
| 798-977, gnl|Mm7|chr11 (116327138-116327317) | |
| 798-977, gnl|monDom2|scaffold_18 (33846782-33847014) | |
| 798-977, gnl|oryCun1|scaffold_182088 (12152-11920) | |
| 798-977, gnl|panTro1|chr19 (74869506-74869744) | |
| 798-977, gnl|rheMac2|chr16 (71332527-71332765) | |
| 798-977, gnl|rn3|chr10 (106344452-106344687) | |
| 798-977, gnl|tetNig1|chr11 (7144139-7144357) | |
| 798-977, gnl|xenTro1|scaffold_85 (1879825-1880063) | |
| 1788-2230, gnl|bosTau2|chr1 (36103301-36102859) | |
| 1788-2230, gnl|Hg17|chr12 (54652363-54652834) | |
| 1946-2223, gnl|bosTau2|chr14 (28284092-28283828) | |
| 1946-2223, gnl|Hg17|chr12 (54652540-54652833) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| amn (0.417711) | |
| fty (0.351679) | |
| clu (0.239292) | |
| cty (0.20816) | |
| eye (0.170503) | |
| fat (0.147427) | |
| liv (0.146284) | |
| spl (0.143184) | |
| bla (0.124347) | |
| eep (0.122564) | |
| eru (0.120048) | |
| med (0.116252) | |
| eje (0.0988338) | |
| ldo (0.0970026) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.417711) | |
| fty (0.351679) | |
| clu (0.239292) | |
| cty (0.20816) | |
| eye (0.170503) | |
| fat (0.147427) | |
| liv (0.146284) | |
| spl (0.143184) | |
| bla (0.124347) | |
| eep (0.122564) | |
| eru (0.120048) | |
| med (0.116252) | |
| eje (0.0988338) | |
| ldo (0.0970026) |