Non-Coding RNA Search

Ss1.1-Thy1-THY010026B07.5

Sequence:


               
               ACCGGAAGTAGTGGGTGGTGCGCGGGCTCTGAACGGAAGGCTTCCGCCAGCCCGGCGGAC
AGAATGGTGGGCAGCGGCAGGAAGCGAAGGCCTGGCGGGGAGGGCTCGCAGTGTGAAAAG
CCAGTGGATGTGAAGAAGAGTAAGTCCTGTGAGGCTGACATCCCCACCGATCTTCGAAAA
GAAGTAGAAAGTCATTACAGGCTTTCTCTGCCAGAAGATTTCTATCACTTCTGGAAGTTC
TGTGAAGAACTCGATCCTGAAAAGCCAGCTGATTCACTTTCTCTAAGCCTTGGACTTCGA
TTAGTGGGTCCTTATGATATCCTTGCCGGGAAACATAAAATGAAGAAAAGGTCAGCTAGC
CTGAATTGTAACCTTCACTGGCGATTCTACTATGATCCTCCAGAGTTCCAGACCATTATC
ATCGGAGACAGTAAAACCCAATTCCACATGGGCTATTTCAGGGATTCTCCTGATGAACTT
CCTGTGTTTGTTGGTACAAATGAAGCAAAGAAAAATTGTGTAATTGTTCCAAATGGTGAT
AACGTATTTGCTGCAGTCAAATTATTTTTGATGAAAAAACTGAAAGAAGTAACAGATAAA
AAGAAAATTAGTCTCTTGAAAAACATAGATGAGAAACTCACAGAAGCAGCCAGAGAACTG
GGGTTCTCGCTGGAGCAGAGAACTGCAAAGATGAAACAGAGAGATAAGAAAGTTGTGACA
AAGACCTTTCATGGCGCAGGCTTGGTTGTTCCAGTAGATAAAAATGATGTTGGATACAGA
GAGCTCCCAGAAACAGATGCCAACCTCCGGAGAATCTGTAAGACCATCGCTGAGGCCCCT
GGTGACGATGAGAGACTGAAAGCTTTCGCGCCCATTCAGGAGATGATGACTTACGTGCAG
TTTGCTAACGATGAGTGCGATTACGGGATGGGGCTTGAGCTGGGGACGGACCTTTTCTGT
CACGGTTCCCACTATTTTCATAAAGTTGCTGGCCAGCTTTTACCTCTTGCATATAATCTG
CTGAAGAGGAATCTCTTTGCAGAAATTATCGAGGGTCACCTGGCAGACAGGAGGAGAGAG
GATGTGGACCAGCTTGCAGTGTAAGCGAGGGCACCTCTCTGGTGCCCAGGACTGGAAGCA
TTCGTGTGGAACTTGTTTTTTTAAGGGATACTGAAAATAAACTGACGGAAACACTTACTA
AAACCTCTTACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCGGAAGTAGTGGGTGGTGCGCGGGCTCTGAACGGAAGGCTTCCGCCAGCCCGGCGGAC
AGAATGGTGGGCAGCGGCAGGAAGCGAAGGCCTGGCGGGGAGGGCTCGCAGTGTGAAAAG
CCAGTGGATGTGAAGAAGAGTAAGTCCTGTGAGGCTGACATCCCCACCGATCTTCGAAAA
GAAGTAGAAAGTCATTACAGGCTTTCTCTGCCAGAAGATTTCTATCACTTCTGGAAGTTC
TGTGAAGAACTCGATCCTGAAAAGCCAGCTGATTCACTTTCTCTAAGCCTTGGACTTCGA
TTAGTGGGTCCTTATGATATCCTTGCCGGGAAACATAAAATGAAGAAAAGGTCAGCTAGC
CTGAATTGTAACCTTCACTGGCGATTCTACTATGATCCTCCAGAGTTCCAGACCATTATC
ATCGGAGACAGTAAAACCCAATTCCACATGGGCTATTTCAGGGATTCTCCTGATGAACTT
CCTGTGTTTGTTGGTACAAATGAAGCAAAGAAAAATTGTGTAATTGTTCCAAATGGTGAT
AACGTATTTGCTGCAGTCAAATTATTTTTGATGAAAAAACTGAAAGAAGTAACAGATAAA
AAGAAAATTAGTCTCTTGAAAAACATAGATGAGAAACTCACAGAAGCAGCCAGAGAACTG
GGGTTCTCGCTGGAGCAGAGAACTGCAAAGATGAAACAGAGAGATAAGAAAGTTGTGACA
AAGACCTTTCATGGCGCAGGCTTGGTTGTTCCAGTAGATAAAAATGATGTTGGATACAGA
GAGCTCCCAGAAACAGATGCCAACCTCCGGAGAATCTGTAAGACCATCGCTGAGGCCCCT
GGTGACGATGAGAGACTGAAAGCTTTCGCGCCCATTCAGGAGATGATGACTTACGTGCAG
TTTGCTAACGATGAGTGCGATTACGGGATGGGGCTTGAGCTGGGGACGGACCTTTTCTGT
CACGGTTCCCACTATTTTCATAAAGTTGCTGGCCAGCTTTTACCTCTTGCATATAATCTG
CTGAAGAGGAATCTCTTTGCAGAAATTATCGAGGGTCACCTGGCAGACAGGAGGAGAGAG
GATGTGGACCAGCTTGCAGTGTAAGCGAGGGCACCTCTCTGGTGCCCAGGACTGGAAGCA
TTCGTGTGGAACTTGTTTTTTTAAGGGATACTGAAAATAAACTGACGGAAACACTTACTA
AAACCTCTTACA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q9NWY4_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9NWY4_HUMAN

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               176-1210, gnl|bosTau2|chr10 (28689840-28688811)
               

               
               176-1210, gnl|Hg17|chr5 (179446558-179445213)
               

               
               176-1210, gnl|Mm7|chr8 (59285428-59299224)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               176-1210, gnl|bosTau2|chr10 (28689840-28688811)
               

               
               176-1210, gnl|Hg17|chr5 (179446558-179445213)
               

               
               176-1210, gnl|Mm7|chr8 (59285428-59299224)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               spl (0.286369)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               duo (0.172801)
               

               
               eli (0.151814)
               

               
               lnt (0.142308)
               

               
               ssp (0.13552)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               med (0.116252)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.286369)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               duo (0.172801)
               

               
               eli (0.151814)
               

               
               lnt (0.142308)
               

               
               ssp (0.13552)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               med (0.116252)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)

	176-1210, gnl\|bosTau2\|chr10 (28689840-28688811)
	176-1210, gnl\|Hg17\|chr5 (179446558-179445213)
	176-1210, gnl\|Mm7\|chr8 (59285428-59299224)

	spl (0.286369)
	tes (0.207814)
	fcc (0.197785)
	eje (0.197668)
	duo (0.172801)
	eli (0.151814)
	lnt (0.142308)
	ssp (0.13552)
	ova (0.129132)
	ret (0.128733)
	tra (0.123092)
	med (0.116252)
	spc (0.113366)
	nbm (0.0993246)