Non-Coding RNA Search

Ss1.1-Thy1-THY010026C11.5

Sequence:


               
               TTTATAATCAAAAGATTGCTAATCCAGATCCAAAATGACAGACCTTCTTTATGTTCCTTC
TTTCTGTATGAAGTTATAGTCACATAGAGAATCTATGTTTTCCATCATTCTCTTTTATTC
TTCATAGGCTGAATGCAAGGAGTGTCAGCAGTATGTCTGCATATCCATGTTTGCACATTG
AATCAGTTATCCATTGCTAGGTAGCAAACCATCCCAAAACTTCCTGGTTTACAACAACAA
TATTTCTCACAATTCTGTAAGTTGGCTGGGTGGTTTTTCTGCTATTATCTCTGGATTCAT
TCATGCATTGACGTTCAGCTGGTGGGACAGCTCAGAATAGGATCTCTTTCCACATGTTTT
TTTCATCCTTGACTTCTTCTCAGCATGGTGGTCTCAGGTATCCAAAAAGGCAAGGCCCAA
CACATAAGCGCTTATCAAGCCTCTGCTTGTGTCACATTTGTCAGTGTCACATTGACCAAA
GCAGATCACATGGACAGTCAGTGTTAGAGTGGACGACACAGGAGATGCCAGTAGACCTGA
TTGGTTTAGAGCCTTTTCTGTAAGAATCTACCGCACACATGCATGGCAAATTTATGTTTC
AGCGCTTAAAAAAGAAAACAAAAAACTGTGTTAACTTGGACCACACTAACTCAGTTTCTG
AGGAGAAGGCTGAGAGTTTGATTTGGAAAGGAGACTTCCTTTCCATTTAATAAATTTACC
TTCATTGATTAATACTTTTTATTTGATAATATCCTTTTAAACAGTTTCTTTTACCACGGG
CTGATATTGTTTCTTTCATTAAAGAAAAAGACAAAACTTTTCTCCCTGGCCTAGGAACTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTATAATCAAAAGATTGCTAATCCAGATCCAAAATGACAGACCTTCTTTATGTTCCTTC
TTTCTGTATGAAGTTATAGTCACATAGAGAATCTATGTTTTCCATCATTCTCTTTTATTC
TTCATAGGCTGAATGCAAGGAGTGTCAGCAGTATGTCTGCATATCCATGTTTGCACATTG
AATCAGTTATCCATTGCTAGGTAGCAAACCATCCCAAAACTTCCTGGTTTACAACAACAA
TATTTCTCACAATTCTGTAAGTTGGCTGGGTGGTTTTTCTGCTATTATCTCTGGATTCAT
TCATGCATTGACGTTCAGCTGGTGGGACAGCTCAGAATAGGATCTCTTTCCACATGTTTT
TTTCATCCTTGACTTCTTCTCAGCATGGTGGTCTCAGGTATCCAAAAAGGCAAGGCCCAA
CACATAAGCGCTTATCAAGCCTCTGCTTGTGTCACATTTGTCAGTGTCACATTGACCAAA
GCAGATCACATGGACAGTCAGTGTTAGAGTGGACGACACAGGAGATGCCAGTAGACCTGA
TTGGTTTAGAGCCTTTTCTGTAAGAATCTACCGCACACATGCATGGCAAATTTATGTTTC
AGCGCTTAAAAAAGAAAACAAAAAACTGTGTTAACTTGGACCACACTAACTCAGTTTCTG
AGGAGAAGGCTGAGAGTTTGATTTGGAAAGGAGACTTCCTTTCCATTTAATAAATTTACC
TTCATTGATTAATACTTTTTATTTGATAATATCCTTTTAAACAGTTTCTTTTACCACGGG
CTGATATTGTTTCTTTCATTAAAGAAAAAGACAAAACTTTTCTCCCTGGCCTAGGAACTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               623-773, + strand, RNAz p=0.970368

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               623-773, + strand, RNAz p=0.970368

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               107-821, gnl|bosTau2|chr16 (44506866-44507555)
               

               
               107-821, gnl|Hg17|chr1 (171530640-171531603)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               107-821, gnl|bosTau2|chr16 (44506866-44507555)
               

               
               107-821, gnl|Hg17|chr1 (171530640-171531603)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               thg (0.126791)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.126791)

	107-821, gnl\|bosTau2\|chr16 (44506866-44507555)
	107-821, gnl\|Hg17\|chr1 (171530640-171531603)