Non-Coding RNA Search

Ss1.1-Thy1-THY010026G10.5

Sequence:


               
               TGAAAAACAAAAACTCGAGAACAGTTTTGAAGTTCTGACCGTTTGAACTCTATTTCTGTA
TGTACCTTTTAAGACCGTGATGACCCGTAGGTGACCGAGGGGTCTGAGTGCCCGCTCATC
AGCTGGCACCACGTTCTGCTACCTTGGCCACAAAGCCTGCCTCCCCGTGGGGTCGTCAGC
CTAACCTTGGCTTCTCTCTCGAAGATTCTTTGAAAAGGTCGTGCAGAGAAATCCAGAGAG
TTTGTCCTGAAAGGTACAGGGACACATTTCTAGATGAAACATTTTTTTAAAGAAATGTCC
TTTCCTTTATGTAAAGCGTCTCCCTAGTGCCTTACTGAGAGAGCAGCCGACTCCTTTTGT
CCCCAGGCAGTGGCGTTCCTGGGCAGCGAGTGCCCCGCTCACCCGGGACTGGCCTTCCCG
CTCGTGGGGGACAGAGGGCCACTGCCTCTTTAAAAGCATCCTCGTCGCCTTCCCTCCACC
TCGGACGTGCCCCCTCGGTCAGGCCGCCCCTCCTGCCCCTCCAGCCTCTGGTCAAGTACT
CGTTGAACTCCCACGTGGGTCGAAAACCTAGATGTGGCCCTTGTTTGTGTGCATAGCCTC
AGCCGAGAGCCAGGCCGAAGTGTCCCCGAGGTCCTCTTGAGCCAAACCTTGAATCTCGTT
GCTTGGCGATGTGCCCTGCGTTTGCCGTGTGGGCAGTGAATTAGAAGGAAGCAGGAGAGG
GGGTTATTGCCCTCAGCTGGCTTGAGGACAGAGCACCCCCCTCGTCCCCCAGTGTTGCAG
TCCAGGCCTCCACTGGGCTCCGGGCTCCGCGGATGACCGTGGCAGAAGTTCATGGCAGAG
CGGCTTGTCAAAGTCAGGGCACCTCCCAGGAAAACCACGGGTGTGTTTGTGCAAAGTTCT
CGATCGCTGCTGGACCCAGAGCCCTGGGGACGCACGCCTTCCTCTAGATGTTGGCTGTTG
TGCCTTTGAAAAGCCTTTGAGCACCCCTTGGGAGGCCCCCCTTTTCCGGTGGGAAGTTAG
GGGGGTCCTCGGGCAGTGGCTGGTTGGAGGGGGACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAAAAACAAAAACTCGAGAACAGTTTTGAAGTTCTGACCGTTTGAACTCTATTTCTGTA
TGTACCTTTTAAGACCGTGATGACCCGTAGGTGACCGAGGGGTCTGAGTGCCCGCTCATC
AGCTGGCACCACGTTCTGCTACCTTGGCCACAAAGCCTGCCTCCCCGTGGGGTCGTCAGC
CTAACCTTGGCTTCTCTCTCGAAGATTCTTTGAAAAGGTCGTGCAGAGAAATCCAGAGAG
TTTGTCCTGAAAGGTACAGGGACACATTTCTAGATGAAACATTTTTTTAAAGAAATGTCC
TTTCCTTTATGTAAAGCGTCTCCCTAGTGCCTTACTGAGAGAGCAGCCGACTCCTTTTGT
CCCCAGGCAGTGGCGTTCCTGGGCAGCGAGTGCCCCGCTCACCCGGGACTGGCCTTCCCG
CTCGTGGGGGACAGAGGGCCACTGCCTCTTTAAAAGCATCCTCGTCGCCTTCCCTCCACC
TCGGACGTGCCCCCTCGGTCAGGCCGCCCCTCCTGCCCCTCCAGCCTCTGGTCAAGTACT
CGTTGAACTCCCACGTGGGTCGAAAACCTAGATGTGGCCCTTGTTTGTGTGCATAGCCTC
AGCCGAGAGCCAGGCCGAAGTGTCCCCGAGGTCCTCTTGAGCCAAACCTTGAATCTCGTT
GCTTGGCGATGTGCCCTGCGTTTGCCGTGTGGGCAGTGAATTAGAAGGAAGCAGGAGAGG
GGGTTATTGCCCTCAGCTGGCTTGAGGACAGAGCACCCCCCTCGTCCCCCAGTGTTGCAG
TCCAGGCCTCCACTGGGCTCCGGGCTCCGCGGATGACCGTGGCAGAAGTTCATGGCAGAG
CGGCTTGTCAAAGTCAGGGCACCTCCCAGGAAAACCACGGGTGTGTTTGTGCAAAGTTCT
CGATCGCTGCTGGACCCAGAGCCCTGGGGACGCACGCCTTCCTCTAGATGTTGGCTGTTG
TGCCTTTGAAAAGCCTTTGAGCACCCCTTGGGAGGCCCCCCTTTTCCGGTGGGAAGTTAG
GGGGGTCCTCGGGCAGTGGCTGGTTGGAGGGGGACC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               931-1056, - strand, RNAz p=0.762763

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               931-1056, - strand, RNAz p=0.762763

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               9-1056, gnl|bosTau2|chr13 (39842783-39843876)
               

               
               9-1056, gnl|Hg17|chr20 (55658663-55657608)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-1056, gnl|bosTau2|chr13 (39842783-39843876)
               

               
               9-1056, gnl|Hg17|chr20 (55658663-55657608)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               csp (0.322373)
               

               
               nep (0.183925)
               

               
               nmm (0.132802)
               

               
               eep (0.122564)
               

               
               jca (0.11396)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (0.322373)
               

               
               nep (0.183925)
               

               
               nmm (0.132802)
               

               
               eep (0.122564)
               

               
               jca (0.11396)

	9-1056, gnl\|bosTau2\|chr13 (39842783-39843876)
	9-1056, gnl\|Hg17\|chr20 (55658663-55657608)

	csp (0.322373)
	nep (0.183925)
	nmm (0.132802)
	eep (0.122564)
	jca (0.11396)