Non-Coding RNA Search

Ss1.1-Thy1-THY010026H06.5

Sequence:


               
               CGTTCTAGTTCCGAGCCCAGGTGGCATCCCCGCCTGCCTCGGCCTCCAGGAGGCGGGGCA
CAGCAGCAGGGAGGCGGTCTATGGCCCGCCAATGACTTGGGGACGAGCAGAGGGGCGAGA
GTGGTCCTTTACTCTAGCCCAACGTCACGGCGCAAGCCCCGCCCCCTCGCCGACTGCGGC
TGGGCGCTGAGCGAGTGAAAGAACCACGGTGCGGACGGCGAACCCGGTGTGCTACAATGC
TGCTGCTGCGCAAAGTTGTGCTTCCAGGAATCCAGCAGGCCTGCAGACTCAAGTCCACTC
CCTCAAGGCTCTGCATTCAGGCCTGCTCTACAAATGATTCATTTCAGCCCCAGCACCACA
TCCTCGCCTTCTCTGGTGATCACTCCAGCACCAAGGGATGGAGAGTCATGGGGACCCTGC
TAGGCCTCGGTGCAGTGTTGGCCTATCATGACTACCAGTGCAAGGCTGCTCAGGAGCCAC
CACGCATATACACGAGGGAGGAAGTGAGATCCCACAGCAGCCCTGAGACTGGGATTTGGG
TGACTTTGGGCTCTGAGGTCTTTGACGTCACAGAATTTGTGGACCTACACCCAGGGGGGC
CATCAAAGCTGATGCTAGCAGCCGGGGGTCCTCTAGAGCCCTTCTGGGCCCTCTATGCTG
TTCACGACCAGCCCCACGTGCGAGAGATACTGGCTCAGTACAAGATTGGGGAACTGAGCC
CTGAAGACAAGGCACCCTCCACCTTGAAGACCTCTGACCCTTATGCTAATGATCCTATAC
GTCACCCAGCCCTGAAGGTTAACAGCCAGCGCCCTTTTAATGCAGAACCTCCCCCTGAGC
TGCTGACAGAAAACTACATCACACCCAACCCGATCTTCTTCACTAGGAATCACTTGCCTG
TGCCTAACCTGGACCCAGACACCTATCGCCTGCATGTAGTAGGGCCACCTGGGGGTCAGT
CACTGTACCTATCCCTGGATGACTTGTACCAGTTCCCCAAGCATGAGATCACAGTCACTT
TGCAGTGTGCTGGCAACCGGCGCTCTGAGATGACTCGGTTCAAAGAAGTAAGAGGTCTGG
AGTGGAATACAGGGGCAATTAGCACTGCACGCTGGGCTGGGGCACGGCTCTGTGATGTGT
TAGCCCAGGCTGGTCACCAACTCTCTGAAGCTGAGGCCCATGTCTGCTTTGAGGGATTGG
ACTCAGACCCCACAGGGACTGCTTATGGAGCATCCATCCCTCTGGCTCGGGCCATGGACC
CTGAAGCTGAGGTCCTGCTGGCATATGAGATGAATGGACAGCCTCTGCCTCGTGACCATG
GCTTCCCTGTGCGGGTGGTGGTTCCTGGCGTAGTGGGTGCTCGCCATGTCAAATGGCTGG
GCAAAGTCAGCGTGGAACCAGAGGAAAGTCACAGCCACTGGCAGCGGCGGGATTACAAAG
GCTTCTCTCCATCTGTGGACTGGGACACTGTAGATTTTGACTCGGCTCCATCTATTCAGG
AACTTCCTGTCCAGTCAGCCATCACACAGCCCAAAGACGGGGAGACAATAGAGTCAAGGG
AGGTGACTATCAAGGGCTATGCATGGAGTGGTGGAGGAAGAGCTGTGGTCAGGGTGGATG
TGTCTCTGGATGGGGGCCTAACCTGGCAGGCGGCTGAGCTGGATGGAGAAGAACAGCGTC
CCCGAAAAGCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGTTCTAGTTCCGAGCCCAGGTGGCATCCCCGCCTGCCTCGGCCTCCAGGAGGCGGGGCA
CAGCAGCAGGGAGGCGGTCTATGGCCCGCCAATGACTTGGGGACGAGCAGAGGGGCGAGA
GTGGTCCTTTACTCTAGCCCAACGTCACGGCGCAAGCCCCGCCCCCTCGCCGACTGCGGC
TGGGCGCTGAGCGAGTGAAAGAACCACGGTGCGGACGGCGAACCCGGTGTGCTACAATGC
TGCTGCTGCGCAAAGTTGTGCTTCCAGGAATCCAGCAGGCCTGCAGACTCAAGTCCACTC
CCTCAAGGCTCTGCATTCAGGCCTGCTCTACAAATGATTCATTTCAGCCCCAGCACCACA
TCCTCGCCTTCTCTGGTGATCACTCCAGCACCAAGGGATGGAGAGTCATGGGGACCCTGC
TAGGCCTCGGTGCAGTGTTGGCCTATCATGACTACCAGTGCAAGGCTGCTCAGGAGCCAC
CACGCATATACACGAGGGAGGAAGTGAGATCCCACAGCAGCCCTGAGACTGGGATTTGGG
TGACTTTGGGCTCTGAGGTCTTTGACGTCACAGAATTTGTGGACCTACACCCAGGGGGGC
CATCAAAGCTGATGCTAGCAGCCGGGGGTCCTCTAGAGCCCTTCTGGGCCCTCTATGCTG
TTCACGACCAGCCCCACGTGCGAGAGATACTGGCTCAGTACAAGATTGGGGAACTGAGCC
CTGAAGACAAGGCACCCTCCACCTTGAAGACCTCTGACCCTTATGCTAATGATCCTATAC
GTCACCCAGCCCTGAAGGTTAACAGCCAGCGCCCTTTTAATGCAGAACCTCCCCCTGAGC
TGCTGACAGAAAACTACATCACACCCAACCCGATCTTCTTCACTAGGAATCACTTGCCTG
TGCCTAACCTGGACCCAGACACCTATCGCCTGCATGTAGTAGGGCCACCTGGGGGTCAGT
CACTGTACCTATCCCTGGATGACTTGTACCAGTTCCCCAAGCATGAGATCACAGTCACTT
TGCAGTGTGCTGGCAACCGGCGCTCTGAGATGACTCGGTTCAAAGAAGTAAGAGGTCTGG
AGTGGAATACAGGGGCAATTAGCACTGCACGCTGGGCTGGGGCACGGCTCTGTGATGTGT
TAGCCCAGGCTGGTCACCAACTCTCTGAAGCTGAGGCCCATGTCTGCTTTGAGGGATTGG
ACTCAGACCCCACAGGGACTGCTTATGGAGCATCCATCCCTCTGGCTCGGGCCATGGACC
CTGAAGCTGAGGTCCTGCTGGCATATGAGATGAATGGACAGCCTCTGCCTCGTGACCATG
GCTTCCCTGTGCGGGTGGTGGTTCCTGGCGTAGTGGGTGCTCGCCATGTCAAATGGCTGG
GCAAAGTCAGCGTGGAACCAGAGGAAAGTCACAGCCACTGGCAGCGGCGGGATTACAAAG
GCTTCTCTCCATCTGTGGACTGGGACACTGTAGATTTTGACTCGGCTCCATCTATTCAGG
AACTTCCTGTCCAGTCAGCCATCACACAGCCCAAAGACGGGGAGACAATAGAGTCAAGGG
AGGTGACTATCAAGGGCTATGCATGGAGTGGTGGAGGAAGAGCTGTGGTCAGGGTGGATG
TGTCTCTGGATGGGGGCCTAACCTGGCAGGCGGCTGAGCTGGATGGAGAAGAACAGCGTC
CCCGAAAAGCCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61862848|ref|XP_612598.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61862848|ref|XP_612598.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               525-684, - strand, RNAz p=0.568198
               

               
               1165-1284, - strand, RNAz p=0.940694

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               525-684, - strand, RNAz p=0.568198
               

               
               1165-1284, - strand, RNAz p=0.940694

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               10-228, gnl|bosTau2|chr5 (33614579-33614363)
               

               
               10-228, gnl|Hg17|chr12 (54677177-54677392)
               

               
               10-228, gnl|Mm7|chr10 (128175920-128175618)
               


               
               463-1692, gnl|bosTau2|chr5 (33612029-33610800)
               

               
               463-1692, gnl|Hg17|chr12 (54683650-54684896)
               

               
               463-1692, gnl|Mm7|chr10 (128173696-128172467)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-228, gnl|bosTau2|chr5 (33614579-33614363)
               

               
               10-228, gnl|Hg17|chr12 (54677177-54677392)
               

               
               10-228, gnl|Mm7|chr10 (128175920-128175618)
               


               
               463-1692, gnl|bosTau2|chr5 (33612029-33610800)
               

               
               463-1692, gnl|Hg17|chr12 (54683650-54684896)
               

               
               463-1692, gnl|Mm7|chr10 (128173696-128172467)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cty (0.31224)
               

               
               cst (0.280073)
               

               
               cov (0.264306)
               

               
               csp (0.161186)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.31224)
               

               
               cst (0.280073)
               

               
               cov (0.264306)
               

               
               csp (0.161186)

	525-684, - strand, RNAz p=0.568198
	1165-1284, - strand, RNAz p=0.940694

	10-228, gnl\|bosTau2\|chr5 (33614579-33614363)
	10-228, gnl\|Hg17\|chr12 (54677177-54677392)
	10-228, gnl\|Mm7\|chr10 (128175920-128175618)

	463-1692, gnl\|bosTau2\|chr5 (33612029-33610800)
	463-1692, gnl\|Hg17\|chr12 (54683650-54684896)
	463-1692, gnl\|Mm7\|chr10 (128173696-128172467)