Non-Coding RNA Search

Ss1.1-Thy1-THY010027A06.5

Sequence:


               
               TTCCGTCGGGTGGGTTGTTTCCTGCTTGGGCTCAAGAGGCAGCAGCCAGAGCGGCGCGGG
GAGGAGCTTCGCGCGCAAGGGTGAACGCCCGCTCTACGTGCTCGTTCGCCTTGCGACCGC
TGCGCGCGAGTCCGGTGTCCCCGCGGCGGGCAGCAGAGGCGGCGTCGGTGGATCGCGGAG
GGGGCGGAGGGAGTCCGCGGCGGCGGCTGCAGCAGCGAAATGGCGGAGACCGTGGCGGAC
ACCCGGCGGCTGATCACCAAGCCGCAGAACCTGAATGACGCTTACGGGCCTCCCAGCAAC
TTCCTCGAGATCGATGTGAGCAATCCGCAGACAGTGGGGGTCGGCCGGGGCCGCTTTACC
ACCTACGAAATCAGGGTCAAGACAAATCTGCCTATTTTCAAGCTGAAGGAATCTACCGTT
AGAAGAAGATACAGTGACTTTGAATGGCTTCGAAGTGAATTAGAAAGAGAGAGCAAGGTT
GTAGTTCCCCCACTCCCTGGGAAAGCATTTTTGCGTCAACTTCCTTTTAGAGGAGATGAT
GGAATATTTGATGACAATTTTATTGAAGAAAGGAAGCAAGGGCTGGAGCAGTTTATAAAC
AAGGTCGCTGGTCATCCTCTGGCACAGAATGAACGTTGTCTTCACATGTTTTTACAGGAT
GAAATAATAGATAAAAGCTATACTCCATCTAAAATAAGACATGCCTGAAATTGGCAAGAA
GGGGCAAAAAAAACTTTCCATGACTATTAATGATTCATATGCACCAGTGAAGAAGTTCTA
ACTAACTTTAGCATGCTGCACAAAAACTGGTATAACATGCCTTCAGTATACTAACACTCA
TATGCTCAGTTTTGTTTTGTTTTGTTTTGGCAGTTGACGAGAAGTTAATTTGCTATAGTG
AAAAATCCCTCATTCCAGCCTTTCTATATAAATAGCTCTTCCTTGCTGTTTTAATGTGGT
TCACGCTGTAGCTTCACAAGCCTGTTACTCCAGTATAATCTGCAGTGTCCTAACTAAAGT
TACTGACTTGGTCTTACCTACAGTTTTTGTGTCATGTTTGCTTTTTGAATCTGATTAACT
AGAATATCTCTCTTATCCCCTTTTTAATATGTGGTGTCACTTGACCTAATTTATGTGTGG
AAGCACTACGCATTGGTTTCCTGTACCCTACATGTAAGAGACACATTTGAGTGCAGAAAG
TATCTCCCTTCAGGCTTGTAATACCCTTCACATGGAAGATCAATGAGGGAAATCTTTATA
TTCTGTATAAAAACAAAATCAAATTTATATACTAAAATCATTTGTCTAAAAATTTAAGTT
GTTTTCAAATAAAAATAAAAATGCATTTCTGATATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCGTCGGGTGGGTTGTTTCCTGCTTGGGCTCAAGAGGCAGCAGCCAGAGCGGCGCGGG
GAGGAGCTTCGCGCGCAAGGGTGAACGCCCGCTCTACGTGCTCGTTCGCCTTGCGACCGC
TGCGCGCGAGTCCGGTGTCCCCGCGGCGGGCAGCAGAGGCGGCGTCGGTGGATCGCGGAG
GGGGCGGAGGGAGTCCGCGGCGGCGGCTGCAGCAGCGAAATGGCGGAGACCGTGGCGGAC
ACCCGGCGGCTGATCACCAAGCCGCAGAACCTGAATGACGCTTACGGGCCTCCCAGCAAC
TTCCTCGAGATCGATGTGAGCAATCCGCAGACAGTGGGGGTCGGCCGGGGCCGCTTTACC
ACCTACGAAATCAGGGTCAAGACAAATCTGCCTATTTTCAAGCTGAAGGAATCTACCGTT
AGAAGAAGATACAGTGACTTTGAATGGCTTCGAAGTGAATTAGAAAGAGAGAGCAAGGTT
GTAGTTCCCCCACTCCCTGGGAAAGCATTTTTGCGTCAACTTCCTTTTAGAGGAGATGAT
GGAATATTTGATGACAATTTTATTGAAGAAAGGAAGCAAGGGCTGGAGCAGTTTATAAAC
AAGGTCGCTGGTCATCCTCTGGCACAGAATGAACGTTGTCTTCACATGTTTTTACAGGAT
GAAATAATAGATAAAAGCTATACTCCATCTAAAATAAGACATGCCTGAAATTGGCAAGAA
GGGGCAAAAAAAACTTTCCATGACTATTAATGATTCATATGCACCAGTGAAGAAGTTCTA
ACTAACTTTAGCATGCTGCACAAAAACTGGTATAACATGCCTTCAGTATACTAACACTCA
TATGCTCAGTTTTGTTTTGTTTTGTTTTGGCAGTTGACGAGAAGTTAATTTGCTATAGTG
AAAAATCCCTCATTCCAGCCTTTCTATATAAATAGCTCTTCCTTGCTGTTTTAATGTGGT
TCACGCTGTAGCTTCACAAGCCTGTTACTCCAGTATAATCTGCAGTGTCCTAACTAAAGT
TACTGACTTGGTCTTACCTACAGTTTTTGTGTCATGTTTGCTTTTTGAATCTGATTAACT
AGAATATCTCTCTTATCCCCTTTTTAATATGTGGTGTCACTTGACCTAATTTATGTGTGG
AAGCACTACGCATTGGTTTCCTGTACCCTACATGTAAGAGACACATTTGAGTGCAGAAAG
TATCTCCCTTCAGGCTTGTAATACCCTTCACATGGAAGATCAATGAGGGAAATCTTTATA
TTCTGTATAAAAACAAAATCAAATTTATATACTAAAATCATTTGTCTAAAAATTTAAGTT
GTTTTCAAATAAAAATAAAAATGCATTTCTGATATG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|31560433|ref|NP_059500.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|31560433|ref|NP_059500.2|

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               1-381, gnl|bosTau2|chr11 (84780378-84780785)
               

               
               1-381, gnl|Hg17|chr6 (108689041-108688657)
               

               
               1-381, gnl|Mm7|chr10 (42312784-42313153)
               


               
               592-1356, gnl|bosTau2|chr11 (85020848-85020078)
               

               
               592-1356, gnl|Hg17|chr6 (108640162-108639412)
               

               
               592-1356, gnl|Mm7|chr10 (42345313-42346051)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-381, gnl|bosTau2|chr11 (84780378-84780785)
               

               
               1-381, gnl|Hg17|chr6 (108689041-108688657)
               

               
               1-381, gnl|Mm7|chr10 (42312784-42313153)
               


               
               592-1356, gnl|bosTau2|chr11 (85020848-85020078)
               

               
               592-1356, gnl|Hg17|chr6 (108640162-108639412)
               

               
               592-1356, gnl|Mm7|chr10 (42345313-42346051)

Expressed library(ies): 64 entry(ies)

More info

Expressed library(ies): 64 entry(ies)

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               hea (1.02249)
               

               
               cbl (0.803582)
               

               
               fco (0.78604)
               

               
               tbr (0.770891)
               

               
               sug (0.763747)
               

               
               isp (0.75188)
               

               
               bla (0.746083)
               

               
               liv (0.731422)
               

               
               gul (0.710353)
               

               
               vin (0.665115)
               

               
               kid (0.648677)
               

               
               tes (0.623441)
               

               
               sin (0.524843)
               

               
               pgl (0.473934)
               

               
               mgp (0.461361)
               

               
               ssp (0.406559)
               

               
               ste (0.405625)
               

               
               tra (0.369276)
               

               
               eye (0.341006)
               

               
               fhi (0.339155)
               

               
               cje (0.330469)
               

               
               cty (0.31224)
               

               
               bfe (0.299715)
               

               
               nbm (0.297974)
               

               
               fat (0.294855)
               

               
               lin (0.291206)
               

               
               ldo (0.291008)
               

               
               pty (0.285429)
               

               
               ret (0.257467)
               

               
               cly (0.241284)
               

               
               clu (0.239292)
               

               
               cbe (0.239234)
               

               
               ecc (0.23007)
               

               
               spc (0.226732)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               mgm (0.180343)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               cag (0.151194)
               

               
               lun (0.150489)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               jca (0.11396)

Expressed library(ies): 64 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (1.02249)
               

               
               cbl (0.803582)
               

               
               fco (0.78604)
               

               
               tbr (0.770891)
               

               
               sug (0.763747)
               

               
               isp (0.75188)
               

               
               bla (0.746083)
               

               
               liv (0.731422)
               

               
               gul (0.710353)
               

               
               vin (0.665115)
               

               
               kid (0.648677)
               

               
               tes (0.623441)
               

               
               sin (0.524843)
               

               
               pgl (0.473934)
               

               
               mgp (0.461361)
               

               
               ssp (0.406559)
               

               
               ste (0.405625)
               

               
               tra (0.369276)
               

               
               eye (0.341006)
               

               
               fhi (0.339155)
               

               
               cje (0.330469)
               

               
               cty (0.31224)
               

               
               bfe (0.299715)
               

               
               nbm (0.297974)
               

               
               fat (0.294855)
               

               
               lin (0.291206)
               

               
               ldo (0.291008)
               

               
               pty (0.285429)
               

               
               ret (0.257467)
               

               
               cly (0.241284)
               

               
               clu (0.239292)
               

               
               cbe (0.239234)
               

               
               ecc (0.23007)
               

               
               spc (0.226732)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               mgm (0.180343)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               cag (0.151194)
               

               
               lun (0.150489)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               jca (0.11396)

	1-381, gnl\|bosTau2\|chr11 (84780378-84780785)
	1-381, gnl\|Hg17\|chr6 (108689041-108688657)
	1-381, gnl\|Mm7\|chr10 (42312784-42313153)

	592-1356, gnl\|bosTau2\|chr11 (85020848-85020078)
	592-1356, gnl\|Hg17\|chr6 (108640162-108639412)
	592-1356, gnl\|Mm7\|chr10 (42345313-42346051)

	hea (1.02249)
	cbl (0.803582)
	fco (0.78604)
	tbr (0.770891)
	sug (0.763747)
	isp (0.75188)
	bla (0.746083)
	liv (0.731422)
	gul (0.710353)
	vin (0.665115)
	kid (0.648677)
	tes (0.623441)
	sin (0.524843)
	pgl (0.473934)
	mgp (0.461361)
	ssp (0.406559)
	ste (0.405625)
	tra (0.369276)
	eye (0.341006)
	fhi (0.339155)
	cje (0.330469)
	cty (0.31224)
	bfe (0.299715)
	nbm (0.297974)
	fat (0.294855)
	lin (0.291206)
	ldo (0.291008)
	pty (0.285429)
	ret (0.257467)
	cly (0.241284)
	clu (0.239292)
	cbe (0.239234)
	ecc (0.23007)
	spc (0.226732)
	nms (0.213858)
	mas (0.210305)
	fli (0.202881)
	fcc (0.197785)
	eje (0.197668)
	aor (0.195274)
	col (0.195008)
	nlu (0.191681)
	mgm (0.180343)
	rec (0.17307)
	mcp (0.170648)
	nje (0.16592)
	cki (0.165235)
	nco (0.161734)
	mga (0.160205)
	cag (0.151194)
	lun (0.150489)
	spl (0.143184)
	hyp (0.142837)
	hlv (0.139256)
	che (0.136314)
	pla (0.133672)
	lyg (0.133103)
	ute (0.132784)
	ova (0.129132)
	thg (0.126791)
	ese (0.126502)
	eep (0.122564)
	med (0.116252)
	jca (0.11396)