Non-Coding RNA Search

Ss1.1-Thy1-THY010027B05.5

Sequence:


               
               TTCTTTTTGCAATTTACTCCAGAGAATAAATTGAGTACCAAAGAACCAGTGGCTAGCATT
TCTTCAAACAATGCAGTGATAGAACTGGCCAAATCTCCAGAGTGCCGTGGACTTTGGAGA
GAGTGGTATTATGGTTTAAACAACGATTCTTTGGAGGAAAGGTTATTTATCAATGAAGAA
AATGTTAATGAGTTTCTTGAAGAGGTTCTAAGCTCTCCATTCAAACAGACAATGCCCCTA
AGCTCACCATTAATAGAAGTTCTTCAGGTTACTGATAGTAAGATTGAAATACATGCAAAG
TTGCAAGAATGTGATAACTCTGAGCAGCTTCATGAAAACAAAGAAGGAGCCAATGAAGAA
AGTCATCTAACTGAAAAAGAAAATCTAGAACATCCTACCTCCTCAACAACCAATTCTGAT
TCATCTGTAGCAGTCAAAGTACTAGAAGCCAACAGTTGTGGTCTGGTTGCATGCTTGCAA
CAAGGGGCTTTTGATGTTTCTCAGAAGCCATTTGCAGAGTCAAAAGATAATTTAAAAGGA
CCAGTGAAAATTGAAGAGAAAGAATTAGGTGGAGATCACCCACCTTCATCACTGAACAAA
ACCACAGGTCACGATACACCTGGTTTTGACAACTTAAGGGAAACCAATATGCAGGATGGT
AGTGTGCAGATTATTAAAGATCATGTCACTCATTGCCCATTTAGTTTTCAGAATTCTTTG
CTTTATGACTTGGATTAGTTATATATAATTTTAAAGATTGAGTAAAAATTTTTAGACTTA
AAATATTCTCTTTCAGTTTACTATCTTAAAACCAAAGGCACTCAGGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCTTTTTGCAATTTACTCCAGAGAATAAATTGAGTACCAAAGAACCAGTGGCTAGCATT
TCTTCAAACAATGCAGTGATAGAACTGGCCAAATCTCCAGAGTGCCGTGGACTTTGGAGA
GAGTGGTATTATGGTTTAAACAACGATTCTTTGGAGGAAAGGTTATTTATCAATGAAGAA
AATGTTAATGAGTTTCTTGAAGAGGTTCTAAGCTCTCCATTCAAACAGACAATGCCCCTA
AGCTCACCATTAATAGAAGTTCTTCAGGTTACTGATAGTAAGATTGAAATACATGCAAAG
TTGCAAGAATGTGATAACTCTGAGCAGCTTCATGAAAACAAAGAAGGAGCCAATGAAGAA
AGTCATCTAACTGAAAAAGAAAATCTAGAACATCCTACCTCCTCAACAACCAATTCTGAT
TCATCTGTAGCAGTCAAAGTACTAGAAGCCAACAGTTGTGGTCTGGTTGCATGCTTGCAA
CAAGGGGCTTTTGATGTTTCTCAGAAGCCATTTGCAGAGTCAAAAGATAATTTAAAAGGA
CCAGTGAAAATTGAAGAGAAAGAATTAGGTGGAGATCACCCACCTTCATCACTGAACAAA
ACCACAGGTCACGATACACCTGGTTTTGACAACTTAAGGGAAACCAATATGCAGGATGGT
AGTGTGCAGATTATTAAAGATCATGTCACTCATTGCCCATTTAGTTTTCAGAATTCTTTG
CTTTATGACTTGGATTAGTTATATATAATTTTAAAGATTGAGTAAAAATTTTTAGACTTA
AAATATTCTCTTTCAGTTTACTATCTTAAAACCAAAGGCACTCAGGAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|8922519|ref|NP_060609.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|8922519|ref|NP_060609.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               52-168, + strand, RNAz p=0.531721

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               52-168, + strand, RNAz p=0.531721

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-168, gnl|bosTau2|chr10 (29986710-29986542)
               

               
               1-168, gnl|canFam2|chr8 (29261228-29261563)
               

               
               1-168, gnl|echTel1|scaffold_311793 (2024-1681)
               

               
               1-168, gnl|galGal2|chr5 (54292453-54292771)
               

               
               1-168, gnl|hg17|chr14 (49169717-49170058)
               

               
               1-168, gnl|Hg17|chr14 (49169910-49169742)
               

               
               1-168, gnl|loxAfr1|scaffold_33377 (20541-20198)
               

               
               1-168, gnl|mm7|chr12 (67137962-67138292)
               

               
               1-168, gnl|Mm7|chr12 (67138144-67137976)
               

               
               1-168, gnl|monDom2|scaffold_8 (86760569-86760891)
               

               
               1-168, gnl|oryCun1|scaffold_205548 (45232-45572)
               

               
               1-168, gnl|panTro1|chr15 (48567117-48567458)
               

               
               1-168, gnl|rn3|chr6 (91152747-91153077)
               


               
               296-521, gnl|bosTau2|chr10 (29982277-29982052)
               

               
               296-521, gnl|Hg17|chr14 (49162521-49162296)
               

               
               296-521, gnl|Mm7|chr12 (67131896-67131671)
               


               
               522-824, gnl|bosTau2|chr10 (29981982-29981684)
               

               
               522-824, gnl|Hg17|chr14 (49162226-49161916)
               

               
               522-824, gnl|Mm7|chr12 (67131601-67131314)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-168, gnl|bosTau2|chr10 (29986710-29986542)
               

               
               1-168, gnl|canFam2|chr8 (29261228-29261563)
               

               
               1-168, gnl|echTel1|scaffold_311793 (2024-1681)
               

               
               1-168, gnl|galGal2|chr5 (54292453-54292771)
               

               
               1-168, gnl|hg17|chr14 (49169717-49170058)
               

               
               1-168, gnl|Hg17|chr14 (49169910-49169742)
               

               
               1-168, gnl|loxAfr1|scaffold_33377 (20541-20198)
               

               
               1-168, gnl|mm7|chr12 (67137962-67138292)
               

               
               1-168, gnl|Mm7|chr12 (67138144-67137976)
               

               
               1-168, gnl|monDom2|scaffold_8 (86760569-86760891)
               

               
               1-168, gnl|oryCun1|scaffold_205548 (45232-45572)
               

               
               1-168, gnl|panTro1|chr15 (48567117-48567458)
               

               
               1-168, gnl|rn3|chr6 (91152747-91153077)
               


               
               296-521, gnl|bosTau2|chr10 (29982277-29982052)
               

               
               296-521, gnl|Hg17|chr14 (49162521-49162296)
               

               
               296-521, gnl|Mm7|chr12 (67131896-67131671)
               


               
               522-824, gnl|bosTau2|chr10 (29981982-29981684)
               

               
               522-824, gnl|Hg17|chr14 (49162226-49161916)
               

               
               522-824, gnl|Mm7|chr12 (67131601-67131314)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               duo (0.172801)
               

               
               cki (0.165235)
               

               
               tbr (0.154178)
               

               
               ctl (0.153069)
               

               
               cty (0.10408)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.172801)
               

               
               cki (0.165235)
               

               
               tbr (0.154178)
               

               
               ctl (0.153069)
               

               
               cty (0.10408)

	1-168, gnl\|bosTau2\|chr10 (29986710-29986542)
	1-168, gnl\|canFam2\|chr8 (29261228-29261563)
	1-168, gnl\|echTel1\|scaffold_311793 (2024-1681)
	1-168, gnl\|galGal2\|chr5 (54292453-54292771)
	1-168, gnl\|hg17\|chr14 (49169717-49170058)
	1-168, gnl\|Hg17\|chr14 (49169910-49169742)
	1-168, gnl\|loxAfr1\|scaffold_33377 (20541-20198)
	1-168, gnl\|mm7\|chr12 (67137962-67138292)
	1-168, gnl\|Mm7\|chr12 (67138144-67137976)
	1-168, gnl\|monDom2\|scaffold_8 (86760569-86760891)
	1-168, gnl\|oryCun1\|scaffold_205548 (45232-45572)
	1-168, gnl\|panTro1\|chr15 (48567117-48567458)
	1-168, gnl\|rn3\|chr6 (91152747-91153077)

	296-521, gnl\|bosTau2\|chr10 (29982277-29982052)
	296-521, gnl\|Hg17\|chr14 (49162521-49162296)
	296-521, gnl\|Mm7\|chr12 (67131896-67131671)

	522-824, gnl\|bosTau2\|chr10 (29981982-29981684)
	522-824, gnl\|Hg17\|chr14 (49162226-49161916)
	522-824, gnl\|Mm7\|chr12 (67131601-67131314)

	duo (0.172801)
	cki (0.165235)
	tbr (0.154178)
	ctl (0.153069)
	cty (0.10408)